Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	R	I	T	I	D	P	V	T	R	I	E	G	H	L	R	I	D	C	E	I	E	N	G	V	V	S	K	A	W	A	S	G	T	M	W	R	G	M	E	E	I	V	K	N	R	D	P	R	D	A	W	M	I	V	Q	R	I
Secondary structure
SS confidence
Disorder		?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		C	G	V	C	T	T	T	H	A	L	S	S	V	R	A	A	E	S	A	L	N	I	D	V	P	V	N	A	Q	Y	I	R	N	I	I	L	A	A	H	T	T	H	D	H	I	V	H	F	Y	Q	L	S	A	L	D	W	V	D	I	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	A	L	Q	A	D	P	T	K	A	S	E	M	L	K	G	V	S	T	W	H	L	N	S	P	E	E	F	T	K	V	Q	N	K	I	K	D	L	V	A	S	G	Q	L	G	I	F	A	N	G	Y	W	G	H	P	A	M	K	L	P
Secondary structure
SS confidence
Disorder			?	?	?	?		?	?	?										?	?		?	?	?																		?							?		?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	E	V	N	L	I	A	V	A	H	Y	L	Q	A	L	E	C	Q	R	D	A	N	R	V	V	A	L	L	G	G	K	T	P	H	I	Q	N	L	A	V	G	G	V	A	N	P	I	N	L	D	G	L	G	V	L	N	L	E	R	L
Secondary structure
SS confidence
Disorder		?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	Y	I	K	S	F	I	D	K	L	S	D	F	V	E	Q	V	Y	K	V	D	T	A	V	I	A	A	F	Y	P	E	W	L	T	R	G	K	G	A	V	N	Y	L	S	V	P	E	F	P	T	D	S	K	N	G	S	F	L	F	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	G	Y	I	E	N	A	D	L	S	S	Y	R	P	I	T	S	H	S	D	E	Y	L	I	K	G	I	Q	E	S	A	K	H	S	W	Y	K	D	E	A	P	Q	A	P	W	E	G	T	T	I	P	A	Y	D	G	W	S	D	D	G
Secondary structure
SS confidence
Disorder																																			?			?		?			?													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		K	Y	S	W	V	K	S	P	T	F	Y	G	K	T	V	E	V	G	P	L	A	N	M	L	V	K	L	A	A	G	R	E	S	T	Q	N	K	L	N	E	I	V	A	I	Y	Q	K	L	T	G	N	T	L	E	V	A	Q	L	H	S
Secondary structure
SS confidence
Disorder																											?		?	?	?																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		T	L	G	R	I	I	G	R	T	V	H	C	C	E	L	Q	D	I	L	Q	N	Q	Y	S	A	L	I	T	N	I	G	K	G	D	H	T	T	F	V	K	P	N	I	P	A	T	G	E	F	K	G	V	G	F	L	E	A	P	R	G
Secondary structure
SS confidence
Disorder																														?	?													?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		M	L	S	H	W	M	V	I	K	D	G	I	I	S	N	Y	Q	A	V	V	P	S	T	W	N	S	G	P	R	N	F	N	D	D	V	G	P	Y	E	Q	S	L	V	G	T	P	V	A	D	P	N	K	P	L	E	V	V	R	T	I
Secondary structure
SS confidence
Disorder																														?	?	?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Sequence		H	S	F	D	P	C	M	A	C	A	V	H	V	V	D	A	D	G	N	E	V	V	S	V	K	V	L
Secondary structure
SS confidence
Disorder																	?		?	?								?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3myr chain B Region: 3 - 552 Aligned: 539 Modelled: 550 Confidence: 100.0% Identity: 50% PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Phyre2 PDB 1frf chain L Region: 2 - 552 Aligned: 528 Modelled: 551 Confidence: 100.0% Identity: 45% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1wui chain L domain 1 Region: 2 - 552 Aligned: 526 Modelled: 551 Confidence: 100.0% Identity: 44% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1yq9 chain H domain 1 Region: 3 - 552 Aligned: 527 Modelled: 550 Confidence: 100.0% Identity: 45% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1e3d chain B Region: 2 - 552 Aligned: 526 Modelled: 551 Confidence: 100.0% Identity: 44% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1h2a chain L Region: 2 - 552 Aligned: 528 Modelled: 551 Confidence: 100.0% Identity: 45% PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris Phyre2 PDB 1cc1 chain L Region: 4 - 552 Aligned: 483 Modelled: 514 Confidence: 100.0% Identity: 36% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 2wpn chain B Region: 1 - 552 Aligned: 477 Modelled: 509 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Phyre2 PDB 2fug chain 4 Region: 14 - 550 Aligned: 343 Modelled: 371 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 4 domain 1 Region: 14 - 550 Aligned: 343 Modelled: 371 Confidence: 100.0% Identity: 21% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nqo4-like Phyre2 PDB 1ffv chain C domain 1 Region: 469 - 545 Aligned: 68 Modelled: 77 Confidence: 79.9% Identity: 18% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1vqz chain A domain 1 Region: 11 - 52 Aligned: 42 Modelled: 42 Confidence: 74.9% Identity: 7% Fold: SufE/NifU Superfamily: SufE/NifU Family: SP1160 C-terminal domain-like Phyre2 PDB 1vqz chain A Region: 15 - 63 Aligned: 48 Modelled: 49 Confidence: 73.3% Identity: 6% PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution Phyre2 PDB 1x2g chain A domain 1 Region: 15 - 52 Aligned: 38 Modelled: 38 Confidence: 71.1% Identity: 13% Fold: SufE/NifU Superfamily: SufE/NifU Family: SP1160 C-terminal domain-like Phyre2 PDB 1t3q chain C domain 1 Region: 485 - 545 Aligned: 52 Modelled: 61 Confidence: 57.8% Identity: 15% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1yey chain A domain 2 Region: 19 - 80 Aligned: 62 Modelled: 62 Confidence: 56.9% Identity: 10% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 1n62 chain C domain 1 Region: 478 - 545 Aligned: 59 Modelled: 68 Confidence: 52.1% Identity: 15% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1xx3 chain A Region: 12 - 43 Aligned: 32 Modelled: 32 Confidence: 51.4% Identity: 25% PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd Phyre2 PDB 2dgy chain A Region: 462 - 498 Aligned: 37 Modelled: 37 Confidence: 50.0% Identity: 8% PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein Phyre2 PDB 2gsk chain B domain 1 Region: 12 - 43 Aligned: 32 Modelled: 32 Confidence: 49.6% Identity: 25% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TonB Phyre2 1 c3myrB_ 2 d1frfl_ 3 d1wuil1 4 d1yq9h1 5 d1e3db_ 6 c1h2aL_ 7 d1cc1l_ 8 c2wpnB_ 9 c2fug4_ 10 d2fug41 11 d1ffvc1 12 d1vqza1 13 c1vqzA_ 14 d1x2ga1 15 d1t3qc1 16 d1yeya2 17 d1n62c1 18 c1xx3A_ 19 c2dgyA_ 20 d2gskb1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3myrB_ 100.0 50 PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 2 d1frfl_ 100.0 45 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 3 d1wuil1 100.0 44 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 4 d1yq9h1 100.0 45 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 5 d1e3db_ 100.0 44 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 6 c1h2aL_ 100.0 45 PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 7 d1cc1l_ 100.0 36 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 8 c2wpnB_ 100.0 39 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 9 c2fug4_ 100.0 21 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 10 d2fug41 100.0 21 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nqo4-like 11 d1ffvc1 79.9 18 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 12 d1vqza1 74.9 7 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 13 c1vqzA_ 73.3 6 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 14 d1x2ga1 71.1 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 15 d1t3qc1 57.8 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 16 d1yeya2 56.9 10 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 17 d1n62c1 52.1 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 18 c1xx3A_ 51.4 25 PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd 19 c2dgyA_ 50.0 8 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 20 d2gskb1 49.6 25 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 21 d1o12a1 not modelled 48.2 33 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 22 d1u07a_ not modelled 45.4 25 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 23 d1jdfa2 not modelled 44.8 10 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 24 d1v97a4 not modelled 44.7 4 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 25 d1jroa3 not modelled 44.4 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 26 c2oqkA_ not modelled 43.6 14 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 27 d1iyxa2 not modelled 42.6 21 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 28 c2e5aA_ not modelled 41.8 6 PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp 29 d1rm6b1 not modelled 41.6 5 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 30 d1w6ta2 not modelled 41.5 26 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 31 c3o6uB_ not modelled 41.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein cpe2226; PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195 32 c2qq4A_ not modelled 40.9 21 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 33 d1jt8a_ not modelled 40.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 34 c3mkcA_ not modelled 39.2 20 PDB header:isomerase Chain: A: PDB Molecule:racemase; PDBTitle: crystal structure of a putative racemase 35 c2grxC_ not modelled 38.9 25 PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 36 d1vk9a_ not modelled 38.8 27 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Hypothetical protein TM1506 37 c2dnwA_ not modelled 36.9 11 PDB header:transport protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna 38 d1su0b_ not modelled 36.5 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 39 d2ntka1 not modelled 36.3 23 Fold:Ntn hydrolase-like Superfamily:Archaeal IMP cyclohydrolase PurO Family:Archaeal IMP cyclohydrolase PurO 40 c1grjA_ not modelled 33.8 14 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 41 d1d7qa_ not modelled 33.7 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 42 d3dm8a1 not modelled 32.2 23 Fold:Cystatin-like Superfamily:NTF2-like Family:Rpa4348-like 43 d1grja2 not modelled 31.3 16 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 44 d1e9ga_ not modelled 29.9 29 Fold:OB-fold Superfamily:Inorganic pyrophosphatase Family:Inorganic pyrophosphatase 45 d1wfza_ not modelled 29.8 28 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 46 c1ufiD_ not modelled 29.8 30 PDB header:dna binding protein Chain: D: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of the dimerization domain of human cenp-b 47 d1ufia_ not modelled 29.6 30 Fold:ROP-like Superfamily:Dimerisation domain of CENP-B Family:Dimerisation domain of CENP-B 48 c2k9kA_ not modelled 28.1 19 PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum 49 d2f23a2 not modelled 27.9 24 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 50 d1xjsa_ not modelled 25.4 23 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 51 d1rvka2 not modelled 23.5 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 52 c2xzn5_ not modelled 23.3 57 PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 53 c3u5ga_ not modelled 23.3 57 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 54 c3g0kA_ not modelled 22.9 20 PDB header:ca-binding protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution 55 c1x2gB_ not modelled 21.6 15 PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli 56 c1n62C_ not modelled 20.3 19 PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 57 d1ihra_ not modelled 20.0 25 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 58 d1zjca1 not modelled 19.1 19 Fold:Thermophilic metalloprotease-like Superfamily:Thermophilic metalloprotease-like Family:Thermophilic metalloprotease (M29) 59 c1y7jA_ not modelled 18.7 67 PDB header:signaling protein Chain: A: PDB Molecule:agouti signaling protein; PDBTitle: nmr structure family of human agouti signalling protein (80-2 132: q115y, s124y) 60 c3f40A_ not modelled 18.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_677363.1) from cytophaga hutchinsonii atcc 33406 at3 1.27 a resolution 61 d2r4qa1 not modelled 18.5 24 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 62 d2q22a1 not modelled 18.2 32 Fold:Ava3019-like Superfamily:Ava3019-like Family:Ava3019-like 63 c3b4oB_ not modelled 17.9 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein a/b; PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form 64 c2etnA_ not modelled 17.7 22 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 65 c3sc0A_ not modelled 17.5 75 PDB header:oxidoreductase Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin 66 d2nyga1 not modelled 17.3 30 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 67 c3bmbB_ not modelled 16.0 18 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 68 d2auwa2 not modelled 15.8 11 Fold:NE0471 N-terminal domain-like Superfamily:NE0471 N-terminal domain-like Family:NE0471 N-terminal domain-like 69 c3smaD_ not modelled 15.6 19 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 70 d2chra2 not modelled 15.5 24 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 71 c2kzxA_ not modelled 15.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116 72 c2p4vA_ not modelled 15.4 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 73 c2w3rG_ not modelled 15.2 18 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 74 c2fq2A_ not modelled 14.9 17 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum 75 c2nytB_ not modelled 14.4 67 PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid 76 c3hk4B_ not modelled 13.9 18 PDB header:lyase Chain: B: PDB Molecule:mlr7391 protein; PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution 77 d2e1ba2 not modelled 13.8 31 Fold:RRF/tRNA synthetase additional domain-like Superfamily:ThrRS/AlaRS common domain Family:AlaX-like 78 d1ah9a_ not modelled 13.7 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 c2nqlB_ not modelled 13.6 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:isomerase/lactonizing enzyme; PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens 80 c3e4fB_ not modelled 13.6 21 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 81 c2dvyA_ not modelled 13.1 38 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease pabi; PDBTitle: crystal structure of restriction endonucleases pabi 82 c2auwB_ not modelled 13.1 11 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 83 c3n6jA_ not modelled 12.9 27 PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z 84 c3gkaB_ not modelled 12.9 17 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 85 d1gsma2 not modelled 12.9 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 86 c2l9fA_ not modelled 12.5 12 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 87 c2kboA_ not modelled 12.4 56 PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g 88 c3f14A_ not modelled 12.1 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_680363.1) from cytophaga hutchinsonii atcc 33406 at 1.45 a3 resolution 89 c2l4bA_ not modelled 12.1 8 PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a 90 d1h9aa2 not modelled 12.1 16 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 91 d1t8ka_ not modelled 12.0 19 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 92 c3bjsB_ not modelled 11.5 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666 93 c1t3qF_ not modelled 11.4 16 PDB header:oxidoreductase Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 94 d2etna2 not modelled 11.2 22 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 95 c2kciA_ not modelled 11.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acyl carrier protein; PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141 96 d1z1sa1 not modelled 11.1 25 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 97 c3nxlD_ not modelled 10.9 15 PDB header:lyase Chain: D: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium 98 c2pn0D_ not modelled 10.7 14 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 99 c3fgyB_ not modelled 10.6 0 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein (bxe_b1094) from burkholderia2 xenovorans lb400 at 1.59 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0