Email l.a.kelley@imperial.ac.uk Description P0A828 Date Thu Jan 5 11:06:43 GMT 2012 Unique Job ID 521477ee6ce1da2a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1stzB_ 66.9 18 PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution 2 d1oqya1 54.4 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 3 c3d5lA_ 43.1 14 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 4 d1ifya_ 40.1 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 5 c2dakA_ 39.9 22 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 6 d3e46a1 38.7 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 7 c3dfgA_ 36.8 24 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 8 d2cosa1 36.7 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c2fu4B_ 32.1 21 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 10 c2cosA_ 31.8 32 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) 11 c2l02B_ 28.6 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 12 c2crnA_ 26.4 26 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 13 c1dpuA_ 26.1 19 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 14 d1dpua_ 26.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 15 d1t95a1 25.4 12 Fold:RuvA C-terminal domain-like Superfamily:Hypothetical protein AF0491, middle domain Family:Hypothetical protein AF0491, middle domain 16 c2w57A_ 22.4 12 PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains 17 d2g3qa1 20.6 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 18 d1whqa_ 19.2 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 19 d1whca_ 19.1 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 20 c2cpwA_ 18.6 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 21 c3l9kZ_ not modelled 18.0 22 PDB header:motor protein Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic; PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure 22 c3kevA_ not modelled 17.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galieria sulfuraria dcun1 domain-containing protein; PDBTitle: x-ray crystal structure of a dcun1 domain-containing protein from2 galdieria sulfuraria 23 d1wiva_ not modelled 17.0 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 24 c1fuiB_ not modelled 16.5 17 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 25 d1vega_ not modelled 16.3 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 26 c3qqmD_ not modelled 16.2 23 PDB header:transferase Chain: D: PDB Molecule:mlr3007 protein; PDBTitle: crystal structure of a putative amino-acid aminotransferase2 (np_104211.1) from mesorhizobium loti at 2.30 a resolution 27 c3a1yF_ not modelled 15.5 21 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 28 c3e3vA_ not modelled 15.0 17 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 29 d1r4wa_ not modelled 13.8 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 30 d1veka_ not modelled 13.3 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 31 c3eyyA_ not modelled 13.3 21 PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition 32 c2wbmA_ not modelled 12.8 12 PDB header:rna-binding protein Chain: A: PDB Molecule:ribosome maturation protein sdo1 homolog; PDBTitle: crystal structure of mthsbds, the homologue of the2 shwachman-bodian-diamond syndrome protein in the3 euriarchaeon methanothermobacter thermautotrophicus 33 c1qzeA_ not modelled 12.4 13 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 34 d2cpwa1 not modelled 12.3 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 35 c2dagA_ not modelled 12.1 22 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 36 c2do6A_ not modelled 11.8 28 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 37 c3itcA_ not modelled 11.8 13 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 38 d2fi0a1 not modelled 11.7 31 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 39 d1dhsa_ not modelled 11.3 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Deoxyhypusine synthase, DHS 40 c3fpnB_ not modelled 11.2 23 PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 41 c2fe3B_ not modelled 11.0 20 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 42 c2jnhA_ not modelled 10.4 28 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 43 d1ntha_ not modelled 10.3 22 Fold:TIM beta/alpha-barrel Superfamily:Monomethylamine methyltransferase MtmB Family:Monomethylamine methyltransferase MtmB 44 c2k2pA_ not modelled 9.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 45 c2is9A_ not modelled 9.8 36 PDB header:transcription Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: structure of yeast dcn-1 46 c2d9sA_ not modelled 9.7 33 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 47 d1oqya2 not modelled 9.6 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 48 c2v79B_ not modelled 9.6 11 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 49 c3dp7B_ not modelled 8.6 26 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482 50 c2daiA_ not modelled 8.6 37 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 51 c3ocjA_ not modelled 8.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis 52 d1jjcb1 not modelled 8.0 23 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 53 d1daaa_ not modelled 7.9 19 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 54 c3o10D_ not modelled 7.7 18 PDB header:chaperone Chain: D: PDB Molecule:sacsin; PDBTitle: crystal structure of the hepn domain from human sacsin 55 c3nznA_ not modelled 7.5 33 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 56 d1okra_ not modelled 7.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 57 c2l01A_ not modelled 7.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153 58 c2kdoA_ not modelled 7.1 12 PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds 59 c3gp4B_ not modelled 7.0 9 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, merr family; PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes 60 d1t5la1 not modelled 6.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 61 d1sb6a_ not modelled 6.8 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 62 d1jb0f_ not modelled 6.6 22 Fold:Single transmembrane helix Superfamily:Subunit III of photosystem I reaction centre, PsaF Family:Subunit III of photosystem I reaction centre, PsaF 63 d2eyqa4 not modelled 6.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 64 c3hjhA_ not modelled 6.3 24 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor 65 c2e75H_ not modelled 6.2 57 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 66 c2e74H_ not modelled 6.2 57 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 67 c2e76H_ not modelled 6.2 57 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 68 c3lulA_ not modelled 6.1 13 PDB header:lyase Chain: A: PDB Molecule:4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase.2 (yp_094631.1) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 1.78 a resolution 69 d1iyea_ not modelled 5.9 19 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 70 d1efub3 not modelled 5.7 29 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 71 c3c1dA_ not modelled 5.6 19 PDB header:recombination, dna binding protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: x-ray crystal structure of recx 72 c2zc2A_ not modelled 5.6 18 PDB header:replication Chain: A: PDB Molecule:dnad-like replication protein; PDBTitle: crystal structure of dnad-like replication protein from2 streptococcus mutans ua159, gi 24377835, residues 127-199 73 d1w6ka1 not modelled 5.5 22 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 74 c2abjG_ not modelled 5.4 20 PDB header:transferase Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic; PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate. 75 c1t95A_ not modelled 5.4 12 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein af0491; PDBTitle: crystal structure of the shwachman-bodian-diamond syndrome2 protein orthologue from archaeoglobus fulgidus 76 d2b2na1 not modelled 5.4 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 77 d1m2ia_ not modelled 5.3 33 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 78 c3itfA_ not modelled 5.3 21 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein