Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	N	S	D	R	K	P	G	L	I	K	R	L	W	K	W	W	R	T	P	S	R	L	A	L	G	T	L	L	L	I	G	F	V	G	G	I	V	F	W	G	G	F	N	T	G	M	E	K	A	N	T	E	E	F	C	I	S	C
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?									?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	E	M	R	N	T	V	Y	Q	E	Y	M	D	S	V	H	Y	N	N	R	S	G	V	R	A	T	C	P	D	C	H	V	P	H	E	F	V	P	K	M	I	R	K	L	K	A	S	K	E	L	Y	G	K	I	F	G	V	I	D	T
Secondary structure
SS confidence
Disorder															?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	Q	K	F	E	A	H	R	L	T	M	A	Q	N	E	W	R	R	M	K	D	N	N	S	Q	E	C	R	N	C	H	N	F	E	Y	M	D	T	T	A	Q	K	S	V	A	A	K	M	H	D	Q	A	V	K	D	G	Q	T	C	I
Secondary structure
SS confidence
Disorder									?	?	?	?	?										?								?					?	?	?	?	?	?	?	?	?					?	?						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence		D	C	H	K	G	I	A	H	K	L	P	D	M	R	E	V	E	P	G	F
Secondary structure
SS confidence
Disorder									?	?	?		?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j7a chain C Region: 29 - 198 Aligned: 138 Modelled: 159 Confidence: 99.9% Identity: 30% PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 1fgj chain A Region: 53 - 194 Aligned: 127 Modelled: 142 Confidence: 98.7% Identity: 25% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fgj chain A Region: 53 - 194 Aligned: 127 Modelled: 142 Confidence: 98.7% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase Phyre2 PDB 2p0b chain A Region: 52 - 192 Aligned: 133 Modelled: 141 Confidence: 98.5% Identity: 17% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb Phyre2 PDB 2rdz chain A domain 1 Region: 52 - 183 Aligned: 119 Modelled: 121 Confidence: 98.3% Identity: 24% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 52 - 183 Aligned: 132 Modelled: 132 Confidence: 98.1% Identity: 15% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 52 - 183 Aligned: 132 Modelled: 132 Confidence: 98.1% Identity: 15% PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Phyre2 PDB 1qdb chain A Region: 51 - 183 Aligned: 133 Modelled: 133 Confidence: 98.0% Identity: 15% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs7 chain A Region: 52 - 183 Aligned: 132 Modelled: 132 Confidence: 98.0% Identity: 11% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1sp3 chain A Region: 54 - 191 Aligned: 135 Modelled: 138 Confidence: 98.0% Identity: 19% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs9 chain A Region: 52 - 183 Aligned: 132 Modelled: 132 Confidence: 98.0% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Phyre2 PDB 1ft5 chain A Region: 54 - 200 Aligned: 143 Modelled: 147 Confidence: 97.9% Identity: 18% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2vr0 chain A Region: 52 - 183 Aligned: 132 Modelled: 132 Confidence: 97.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 2j7a chain E Region: 52 - 183 Aligned: 132 Modelled: 132 Confidence: 97.8% Identity: 15% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 3f29 chain A Region: 53 - 183 Aligned: 122 Modelled: 131 Confidence: 97.7% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Phyre2 PDB 3pmq chain A Region: 53 - 183 Aligned: 88 Modelled: 96 Confidence: 97.3% Identity: 23% PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf Phyre2 PDB 1y0p chain A domain 1 Region: 72 - 185 Aligned: 71 Modelled: 76 Confidence: 97.1% Identity: 23% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1d4c chain A domain 1 Region: 72 - 185 Aligned: 72 Modelled: 77 Confidence: 97.0% Identity: 22% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2a3m chain A Region: 71 - 183 Aligned: 88 Modelled: 113 Confidence: 96.6% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) Phyre2 PDB 1jrx chain A Region: 72 - 185 Aligned: 71 Modelled: 76 Confidence: 96.5% Identity: 28% PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina Phyre2 PDB 3o0r chain C Region: 7 - 65 Aligned: 49 Modelled: 49 Confidence: 84.3% Identity: 16% PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment Phyre2 1 c2j7aC_ 2 d1fgja_ 3 c1fgjA_ 4 c2p0bA_ 5 d2rdza1 6 d1oaha_ 7 c1oahA_ 8 d1qdba_ 9 d1fs7a_ 10 d1sp3a_ 11 c1fs9A_ 12 d1ft5a_ 13 c2vr0A_ 14 c2j7aE_ 15 c3f29A_ 16 c3pmqA_ 17 d1y0pa1 18 d1d4ca1 19 c2a3mA_ 20 c1jrxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 c3o0rC_ 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j7aC_ 99.9 30 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 2 d1fgja_ 98.7 25 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 3 c1fgjA_ 98.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase 4 c2p0bA_ 98.5 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb 5 d2rdza1 98.3 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 6 d1oaha_ 98.1 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 7 c1oahA_ 98.1 15 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 8 d1qdba_ 98.0 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 9 d1fs7a_ 98.0 11 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 10 d1sp3a_ 98.0 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 11 c1fs9A_ 98.0 11 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 12 d1ft5a_ 97.9 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 13 c2vr0A_ 97.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 14 c2j7aE_ 97.8 15 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 15 c3f29A_ 97.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite 16 c3pmqA_ 97.3 23 PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf 17 d1y0pa1 97.1 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 18 d1d4ca1 97.0 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 19 c2a3mA_ 96.6 18 PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) 20 c1jrxA_ 96.5 28 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 21 c3ouqA_ not modelled 96.4 19 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 22 d1i77a_ not modelled 96.1 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 23 d1j0pa_ not modelled 96.1 35 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 24 d2ctha_ not modelled 95.8 38 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 25 c2k3vA_ not modelled 95.7 19 PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina 26 d1wada_ not modelled 95.6 31 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 27 d1m1qa_ not modelled 95.5 31 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 28 d1qo8a1 not modelled 95.4 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 29 d1gyoa_ not modelled 95.1 30 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 30 d1up9a_ not modelled 94.9 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 31 c2e84A_ not modelled 94.7 37 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion 32 d1ofwa_ not modelled 94.6 31 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 33 c1qo8A_ not modelled 94.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 34 d1duwa_ not modelled 94.4 25 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 35 c3oueA_ not modelled 94.2 16 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 36 d2i5nc1 not modelled 94.1 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 37 d1aqea_ not modelled 93.9 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 38 c2jblC_ not modelled 93.8 23 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 39 c1z1nX_ not modelled 93.0 20 PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas 40 d1ogyb_ not modelled 93.0 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 41 c2cvcA_ not modelled 92.9 31 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough) 42 c3o5aB_ not modelled 92.8 27 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 43 d2cvca1 not modelled 92.3 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 44 d3caoa_ not modelled 91.6 28 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 45 c3h4nB_ not modelled 91.2 30 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c7; PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens 46 c3h34A_ not modelled 90.9 32 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens 47 d19hca_ not modelled 90.8 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 48 c3ov0A_ not modelled 90.4 15 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996 49 c1eysC_ not modelled 89.0 13 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 50 d1eysc_ not modelled 89.0 13 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 51 c2bq4A_ not modelled 88.3 24 PDB header:electron transport Chain: A: PDB Molecule:basic cytochrome c3; PDBTitle: crystal structure of type i cytochrome c3 from2 desulfovibrio africanus 52 d2cy3a_ not modelled 87.5 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 53 c1jniA_ not modelled 87.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. 54 d1jnia_ not modelled 87.3 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 55 c2fwtA_ not modelled 86.8 16 PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides 56 c3o0rC_ 84.3 16 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 57 d1h21a_ not modelled 84.2 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 58 d1rwja_ not modelled 79.6 31 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 59 c3h33A_ not modelled 79.5 35 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppcc, a cytochrome c7 from geobacter sulfurreducens 60 d1hh5a_ not modelled 77.1 33 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 61 c1d4cB_ not modelled 76.7 28 PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1 62 c2fynH_ not modelled 67.7 50 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 63 c1p84D_ not modelled 63.2 40 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 64 c1zrtD_ not modelled 62.7 50 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 65 d3cx5d1 not modelled 60.0 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 66 c1m70D_ not modelled 59.9 11 PDB header:electron transport Chain: D: PDB Molecule:cytochrome c4; PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri 67 c2yiuE_ not modelled 58.5 50 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 68 d1ppjd1 not modelled 55.3 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 69 c3mk7B_ not modelled 54.8 15 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 70 c3cwbQ_ not modelled 53.9 27 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 71 d1otsa_ not modelled 51.0 22 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 72 d1os6a_ not modelled 50.7 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 73 c2hydB_ not modelled 49.0 17 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 74 d1h32a2 not modelled 39.7 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 75 d2axtj1 not modelled 38.4 16 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 76 d1h32a1 not modelled 36.1 42 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 77 c2c1dC_ not modelled 36.0 32 PDB header:oxidoreductase Chain: C: PDB Molecule:soxa; PDBTitle: crystal structure of soxxa from p. pantotrophus 78 d1jdla_ not modelled 33.1 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 79 c3hd7A_ not modelled 32.4 15 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 80 d1i8oa_ not modelled 31.7 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 81 d1cxca_ not modelled 31.6 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 82 d1wejf_ not modelled 29.8 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 83 c3a0bl_ not modelled 28.2 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 84 c3a0bL_ not modelled 27.9 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 85 c2l4dA_ not modelled 27.8 56 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 86 d1ql3a_ not modelled 27.5 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 87 d3c2ca_ not modelled 27.5 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 88 c1h32A_ not modelled 27.4 42 PDB header:electron transfer Chain: A: PDB Molecule:diheme cytochrome c; PDBTitle: reduced soxax complex from rhodovulum sulfidophilum 89 d1lfma_ not modelled 27.2 44 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 90 d1cota_ not modelled 26.6 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 91 c3bz1L_ not modelled 26.1 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 92 c3prrL_ not modelled 26.1 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 93 c3prqL_ not modelled 26.1 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 94 c3kziL_ not modelled 26.1 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 95 c3bz2L_ not modelled 26.1 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 96 c3arcL_ not modelled 26.1 30 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 97 c1s5ll_ not modelled 26.0 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 98 c1s5lL_ not modelled 26.0 30 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 99 d2axtl1 not modelled 26.0 30 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 100 c2axtL_ not modelled 26.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 101 c2axtl_ not modelled 26.0 30 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 102 d1j3sa_ not modelled 26.0 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 103 d1nmla2 not modelled 25.8 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 104 c3cp5A_ not modelled 25.7 27 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: cytochrome c from rhodothermus marinus 105 d1qn2a_ not modelled 25.1 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 106 d2hyda2 not modelled 23.9 11 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 107 c3m97X_ not modelled 23.1 33 PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans 108 c2czsB_ not modelled 22.3 32 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c, putative; PDBTitle: crystal structure analysis of the diheme c-type cytochrome dhc2 109 c3b47A_ not modelled 22.1 44 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0582 110 c2fqcA_ not modelled 22.0 50 PDB header:toxin Chain: A: PDB Molecule:conotoxin pl14a; PDBTitle: solution structure of conotoxin pl14a 111 d1lmsa_ not modelled 21.8 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 112 c2c1dB_ not modelled 21.5 19 PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus 113 d1vyda_ not modelled 21.3 50 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 114 d1h32b_ not modelled 20.9 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 115 d1eb7a1 not modelled 20.7 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 116 d1hzua1 not modelled 20.7 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 117 c3oa8B_ not modelled 20.5 33 PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax 118 d1ytca_ not modelled 20.5 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 119 c1ciiA_ not modelled 20.5 22 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 120 d1nmla1 not modelled 20.4 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0