Email l.a.kelley@imperial.ac.uk Description P07013 Date Thu Jan 5 10:59:59 GMT 2012 Unique Job ID 48d1fd2c51906efd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1v1qa_ 100.0 99 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 2 c3k8aA_ 100.0 26 PDB header:dna binding protein Chain: A: PDB Molecule:putative primosomal replication protein; PDBTitle: neisseria gonorrhoeae prib 3 c3fhwB_ 100.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:primosomal replication protein n; PDBTitle: crystal structure of the protein prib from bordetella parapertussis.2 northeast structural genomics consortium target bpr162. 4 d1txya_ 99.9 99 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 5 c2vw9B_ 99.9 18 PDB header:dna-binding protein Chain: B: PDB Molecule:single-stranded dna binding protein; PDBTitle: single stranded dna binding protein complex from2 helicobacter pylori 6 c3en2A_ 99.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable primosomal replication protein n; PDBTitle: three-dimensional structure of the protein prib from2 ralstonia solanacearum at the resolution 2.3a. northeast3 structural genomics consortium target rsr213c. 7 c1se8A_ 99.9 15 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: structure of single-stranded dna-binding protein (ssb) from d.2 radiodurans 8 d1se8a_ 99.9 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 9 c2ihfA_ 99.9 21 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus 10 c2iheA_ 99.9 22 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of wild-type single-stranded dna binding protein2 from thermus aquaticus 11 c3tqyA_ 99.9 15 PDB header:transferase Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: structure of a single-stranded dna-binding protein (ssb), from2 coxiella burnetii 12 d1qvca_ 99.9 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 13 c1z9fA_ 99.9 16 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution 14 d1eyga_ 99.9 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 15 c3pgzB_ 99.9 12 PDB header:dna binding protein Chain: B: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of a single strand binding protein (ssb) from2 bartonella henselae 16 c3lgjA_ 99.9 20 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of single-stranded binding protein (ssb) from2 bartonella henselae 17 d3ulla_ 99.8 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 18 c1eqqD_ 99.8 15 PDB header:replication/rna Chain: D: PDB Molecule:single stranded dna binding protein; PDBTitle: single stranded dna binding protein and ssdna complex 19 c3kojA_ 99.8 20 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ycf41; PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein2 from synechococcus sp. northeast structural genomics3 consortium target snr59a. 20 d1ue1a_ 99.8 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 21 c3eivB_ not modelled 99.8 17 PDB header:dna binding protein Chain: B: PDB Molecule:single-stranded dna-binding protein 2; PDBTitle: crystal structure of single-stranded dna-binding protein2 from streptomyces coelicolor 22 c1ue7A_ not modelled 99.8 14 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of the single-stranded dna-binding2 protein from mycobacterium tuberculosis 23 c3e0eA_ not modelled 97.3 12 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 24 c3k81D_ not modelled 96.9 17 PDB header:immune system, rna binding protein Chain: D: PDB Molecule:mp18 rna editing complex protein; PDBTitle: structure of the central interaction protein from the trypanosoma2 brucei editosome in complex with single domain antibodies 25 c3stbC_ not modelled 96.9 17 PDB header:rna binding protein/immune system Chain: C: PDB Molecule:rna-editing complex protein mp42; PDBTitle: a complex of two editosome proteins and two nanobodies 26 c3dm3A_ not modelled 96.8 19 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 27 c2k50A_ not modelled 96.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 28 c3f2cA_ not modelled 94.7 18 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 29 c1fguA_ not modelled 93.9 11 PDB header:replication Chain: A: PDB Molecule:replication protein a 70 kda dna-binding subunit; PDBTitle: ssdna-binding domain of the large subunit of replication2 protein a 30 c1ynxA_ not modelled 92.5 11 PDB header:dna binding protein Chain: A: PDB Molecule:replication factor-a protein 1; PDBTitle: solution structure of dna binding domain a (dbd-a) of2 s.cerevisiae replication protein a (rpa) 31 d1jmca1 not modelled 91.5 6 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 32 d1c0aa1 not modelled 90.0 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 33 c2k75A_ not modelled 88.3 16 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ta0387; PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b. 34 d1l0wa1 not modelled 88.1 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 35 d1b8aa1 not modelled 86.6 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 36 c2hqlB_ not modelled 85.3 17 PDB header:dna binding protein Chain: B: PDB Molecule:hypothetical protein mg376 homolog; PDBTitle: crystal structure of a small single-stranded dna binding2 protein from mycoplasma pneumoniae 37 d1e1oa1 not modelled 85.0 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 38 d1o7ia_ not modelled 80.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 39 d1gm5a2 not modelled 79.8 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 40 d1bbua1 not modelled 76.9 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 41 d1jmca2 not modelled 75.7 4 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 42 c3kf6A_ not modelled 70.2 16 PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 43 d1krta_ not modelled 69.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 44 d1eova1 not modelled 65.3 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 45 c3i7fA_ not modelled 55.7 16 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 46 d1n9wa1 not modelled 53.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 47 d1wjja_ not modelled 52.1 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 48 c1e22A_ not modelled 51.6 14 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 49 c2kenA_ not modelled 51.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a. 50 c2xgtB_ not modelled 50.9 16 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 51 d1ltla_ not modelled 45.4 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 52 c1eqrC_ not modelled 42.8 16 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 53 c3bjuB_ not modelled 42.2 22 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 54 c1wydB_ not modelled 41.7 29 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 55 c3e9hB_ not modelled 40.3 17 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 56 c3m4qA_ not modelled 38.2 12 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 57 c1ltlE_ not modelled 37.5 12 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 58 c1b8aB_ not modelled 36.5 12 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 59 c1x55A_ not modelled 33.8 19 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 60 d1xjva2 not modelled 30.6 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 61 c1efwA_ not modelled 30.0 14 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 62 c1gm5A_ not modelled 22.9 12 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 63 d2zjrg1 not modelled 20.5 25 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 64 c3cf5G_ not modelled 20.5 25 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans 65 c1n9wA_ not modelled 20.4 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 66 d1xjva1 not modelled 19.3 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 67 c2pi2A_ not modelled 17.6 13 PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 68 d1vqoj1 not modelled 17.5 15 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 69 c2vl6C_ not modelled 16.6 16 PDB header:dna binding protein Chain: C: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain 70 d1qr0a1 not modelled 16.6 16 Fold:4'-phosphopantetheinyl transferase Superfamily:4'-phosphopantetheinyl transferase Family:4'-Phosphopantetheinyl transferase SFP 71 d2nn6g1 not modelled 16.1 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 72 d1nnxa_ not modelled 15.8 15 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 73 c2zkrj_ not modelled 15.1 16 PDB header:ribosomal protein/rna Chain: J: PDB Molecule:rna expansion segment es15 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 74 c1asyA_ not modelled 14.9 19 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 75 d1j3aa_ not modelled 14.5 11 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 76 d2j01n1 not modelled 14.1 26 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 77 c3d5bN_ not modelled 13.7 26 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 78 c3kzeA_ not modelled 13.1 14 PDB header:signaling protein Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing protein 1; PDBTitle: crystal structure of t-cell lymphoma invasion and metastasis-1 pdz in2 complex with ssrkeyya peptide 79 c2ja9A_ not modelled 12.7 9 PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 80 c2ftcH_ not modelled 12.6 11 PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 81 c2k4mA_ not modelled 12.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 82 c4a1aI_ not modelled 12.0 25 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l13a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 83 d2ja9a1 not modelled 11.8 7 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 84 c1xjvA_ not modelled 11.6 8 PDB header:transcription/dna Chain: A: PDB Molecule:protection of telomeres 1; PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag) 85 c3jywM_ not modelled 11.0 20 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 86 d2b3ga1 not modelled 10.8 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 87 c3izcK_ not modelled 10.6 20 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 88 c3bboL_ not modelled 10.3 32 PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 89 c1krhA_ not modelled 10.3 9 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 90 d2pi2a1 not modelled 10.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 91 c3kf8C_ not modelled 10.0 14 PDB header:structural protein Chain: C: PDB Molecule:protein stn1; PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex 92 d1vk3a3 not modelled 9.0 11 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 93 d1htwa_ not modelled 8.8 5 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:YjeE-like 94 d1qfza1 not modelled 8.7 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 95 c3nklA_ not modelled 8.7 14 PDB header:oxidoreductase/lyase Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase; PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri 96 d1fnda1 not modelled 7.1 9 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 97 d1krha1 not modelled 7.0 9 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 98 c2nn6G_ not modelled 7.0 12 PDB header:hydrolase/transferase Chain: G: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 99 c1ph4A_ not modelled 6.9 9 PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg