Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	P	I	L	N	H	Y	F	A	R	I	N	W	S	G	A	A	A	V	N	I	D	T	L	R	A	L	H	L	K	H	N	C	T	I	P	F	E	N	L	D	V	L	L	P	R	E	I	Q	L	D	N	Q	S	P	E	E	K	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	A	R	R	G	G	Y	C	F	E	Q	N	G	V	F	E	R	V	L	R	E	L	G	F	N	V	R	S	L	L	G	R	V	V	L	S	N	P	P	A	L	P	P	R	T	H	R	L	L	L	V	E	L	E	E	E	K	W	I
Secondary structure
SS confidence
Disorder																																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	D	V	G	F	G	G	Q	T	L	T	A	P	I	R	L	V	S	D	L	V	Q	T	T	P	H	G	E	Y	R	L	L	Q	E	G	D	D	W	V	L	Q	F	N	H	H	Q	H	W	Q	S	M	Y	R	F	D	L	C	E	Q	Q
Secondary structure
SS confidence
Disorder																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	S	D	Y	V	M	G	N	F	W	S	A	H	W	P	Q	S	H	F	R	H	H	L	L	M	C	R	H	L	P	D	G	G	K	L	T	L	T	N	F	H	F	T	H	Y	E	N	G	H	A	V	E	Q	R	N	L	P	D	V	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Sequence		S	L	Y	A	V	M	Q	E	Q	F	G	L	G	V	D	D	A	K	H	G	F	T	V	D	E	L	A	L	V	M	A	A	F	D	T	H	P	E	A	G	K
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1e2t chain A Region: 1 - 273 Aligned: 273 Modelled: 273 Confidence: 100.0% Identity: 74% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Arylamine N-acetyltransferase Phyre2 PDB 1w5r chain A domain 1 Region: 5 - 271 Aligned: 265 Modelled: 267 Confidence: 100.0% Identity: 36% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Arylamine N-acetyltransferase Phyre2 PDB 1w4t chain A domain 1 Region: 1 - 269 Aligned: 268 Modelled: 268 Confidence: 100.0% Identity: 31% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Arylamine N-acetyltransferase Phyre2 PDB 2vfb chain A Region: 5 - 270 Aligned: 264 Modelled: 266 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: A: PDB Molecule:arylamine n-acetyltransferase; PDBTitle: the structure of mycobacterium marinum arylamine n-2 acetyltransferase Phyre2 PDB 2bsz chain A domain 1 Region: 4 - 271 Aligned: 264 Modelled: 268 Confidence: 100.0% Identity: 37% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Arylamine N-acetyltransferase Phyre2 PDB 3d9w chain A Region: 4 - 263 Aligned: 256 Modelled: 260 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase Phyre2 PDB 3lnb chain A Region: 1 - 253 Aligned: 248 Modelled: 253 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:n-acetyltransferase family protein; PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis Phyre2 PDB 2pfr chain B Region: 3 - 255 Aligned: 250 Modelled: 253 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:arylamine n-acetyltransferase 2; PDBTitle: human n-acetyltransferase 2 Phyre2 PDB 3kd4 chain A Region: 2 - 123 Aligned: 115 Modelled: 122 Confidence: 97.6% Identity: 6% PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution Phyre2 PDB 3isr chain B Region: 16 - 123 Aligned: 95 Modelled: 104 Confidence: 96.1% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease; PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a Phyre2 PDB 3esw chain A Region: 58 - 90 Aligned: 31 Modelled: 33 Confidence: 77.1% Identity: 32% PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. Phyre2 PDB 1x3z chain A domain 1 Region: 65 - 90 Aligned: 26 Modelled: 26 Confidence: 75.3% Identity: 35% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 PDB 2q3z chain A domain 4 Region: 55 - 92 Aligned: 38 Modelled: 38 Confidence: 71.9% Identity: 26% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 PDB 2f4m chain A domain 1 Region: 52 - 139 Aligned: 72 Modelled: 88 Confidence: 69.9% Identity: 19% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 PDB 2qsh chain A Region: 55 - 92 Aligned: 37 Modelled: 38 Confidence: 68.9% Identity: 24% PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna repair protein rad4; PDBTitle: crystal structure of rad4-rad23 bound to a mismatch dna Phyre2 PDB 1zkp chain D Region: 85 - 126 Aligned: 38 Modelled: 39 Confidence: 55.7% Identity: 13% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ba1088; PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease Phyre2 PDB 1g0d chain A domain 4 Region: 67 - 92 Aligned: 26 Modelled: 26 Confidence: 52.8% Identity: 35% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 PDB 3zwf chain A Region: 97 - 126 Aligned: 30 Modelled: 30 Confidence: 50.4% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1; PDBTitle: crystal structure of human trnase z, short form (elac1). Phyre2 PDB 1gxh chain A Region: 238 - 280 Aligned: 39 Modelled: 43 Confidence: 48.1% Identity: 13% Fold: Acyl carrier protein-like Superfamily: Colicin E immunity proteins Family: Colicin E immunity proteins Phyre2 PDB 1ex0 chain A domain 4 Region: 67 - 92 Aligned: 26 Modelled: 26 Confidence: 44.5% Identity: 38% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 1 d1e2ta_ 2 d1w5ra1 3 d1w4ta1 4 c2vfbA_ 5 d2bsza1 6 c3d9wA_ 7 c3lnbA_ 8 c2pfrB_ 9 c3kd4A_ 10 c3isrB_ 11 c3eswA_ 12 d1x3za1 13 d2q3za4 14 d2f4ma1 15 c2qshA_ 16 c1zkpD_ 17 d1g0da4 18 c3zwfA_ 19 d1gxha_ 20 d1ex0a4 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1e2ta_ 100.0 74 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 2 d1w5ra1 100.0 36 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 3 d1w4ta1 100.0 31 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 4 c2vfbA_ 100.0 37 PDB header:transferase Chain: A: PDB Molecule:arylamine n-acetyltransferase; PDBTitle: the structure of mycobacterium marinum arylamine n-2 acetyltransferase 5 d2bsza1 100.0 37 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 6 c3d9wA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase 7 c3lnbA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:n-acetyltransferase family protein; PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis 8 c2pfrB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:arylamine n-acetyltransferase 2; PDBTitle: human n-acetyltransferase 2 9 c3kd4A_ 97.6 6 PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution 10 c3isrB_ 96.1 16 PDB header:hydrolase Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease; PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a 11 c3eswA_ 77.1 32 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 12 d1x3za1 75.3 35 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 13 d2q3za4 71.9 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 14 d2f4ma1 69.9 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 15 c2qshA_ 68.9 24 PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna repair protein rad4; PDBTitle: crystal structure of rad4-rad23 bound to a mismatch dna 16 c1zkpD_ 55.7 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ba1088; PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease 17 d1g0da4 52.8 35 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 18 c3zwfA_ 50.4 27 PDB header:hydrolase Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1; PDBTitle: crystal structure of human trnase z, short form (elac1). 19 d1gxha_ 48.1 13 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 20 d1ex0a4 44.5 38 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 21 c1wv9B_ not modelled 43.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8 22 d1icaa_ not modelled 43.4 60 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Insect defensins 23 c3iacA_ not modelled 38.8 15 PDB header:isomerase Chain: A: PDB Molecule:glucuronate isomerase; PDBTitle: 2.2 angstrom crystal structure of glucuronate isomerase from2 salmonella typhimurium. 24 c2nz3A_ not modelled 35.6 50 PDB header:antimicrobial protein Chain: A: PDB Molecule:defensin, mutant def-acaa; PDBTitle: nmr structure of def-acaa, a mutant of anopheles defensin2 def-aaa 25 d1zkpa1 not modelled 34.4 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:YhfI-like 26 c2e3eA_ not modelled 33.7 70 PDB header:antimicrobial protein Chain: A: PDB Molecule:defensin, mutant def-bbb; PDBTitle: nmr structure of def-bbb, a mutant of anopheles defensin2 def-aaa 27 d1af7a1 not modelled 33.1 15 Fold:Chemotaxis receptor methyltransferase CheR, N-terminal domain Superfamily:Chemotaxis receptor methyltransferase CheR, N-terminal domain Family:Chemotaxis receptor methyltransferase CheR, N-terminal domain 28 c3g1pA_ not modelled 32.3 18 PDB header:lyase Chain: A: PDB Molecule:protein phnp; PDBTitle: crystals structure of phnp from e.coli k-12 29 c2lm1A_ not modelled 29.9 11 PDB header:dna binding protein Chain: A: PDB Molecule:lysine-specific demethylase lid; PDBTitle: solution nmr structure of lysine-specific demethylase lid from2 drosophila melanogaster, northeast structural genomics consortium3 target fr824d 30 c3nvaB_ not modelled 29.0 18 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 31 d2vlqa1 not modelled 27.5 10 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 32 c3chgB_ not modelled 25.8 29 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 33 c4a19F_ not modelled 25.8 23 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 34 d1s1ma2 not modelled 25.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 35 d1kkxa_ not modelled 24.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 36 c3g5jA_ not modelled 24.2 37 PDB header:nucleotide binding protein Chain: A: PDB Molecule:putative atp/gtp binding protein; PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630 37 c2jo7A_ not modelled 24.1 17 PDB header:surface active protein Chain: A: PDB Molecule:glycosylphosphatidylinositol-anchored merozoite PDBTitle: solution structure of the adhesion protein bd37 from2 babesia divergens 38 d1vjja4 not modelled 23.4 16 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 39 c3h11A_ not modelled 23.1 24 PDB header:apoptosis Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator; PDBTitle: zymogen caspase-8:c-flipl protease domain complex 40 d1vcoa2 not modelled 22.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 41 c3ce7A_ not modelled 22.4 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:specific mitochodrial acyl carrier protein; PDBTitle: crystal structure of toxoplasma specific mitochodrial acyl2 carrier protein, 59.m03510 42 c3iz5N_ not modelled 22.3 19 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 43 c2vgpD_ not modelled 20.8 8 PDB header:transferase Chain: D: PDB Molecule:inner centromere protein a; PDBTitle: crystal structure of aurora b kinase in complex with a2 aminothiazole inhibitor 44 d2jq4a1 not modelled 20.7 18 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 45 c2jq4A_ not modelled 20.7 18 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein atu2571; PDBTitle: complete resonance assignments and solution structure2 calculation of atc2521 (nesg id: att6) from agrobacterium3 tumefaciens 46 d1pbya1 not modelled 20.5 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 47 c3p45I_ not modelled 20.1 29 PDB header:hydrolase Chain: I: PDB Molecule:caspase-6; PDBTitle: crystal structure of apo-caspase-6 at physiological ph 48 d1jmxa1 not modelled 20.0 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 49 c1slmA_ not modelled 20.0 7 PDB header:hydrolase Chain: A: PDB Molecule:stromelysin-1; PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme 50 c1l9mB_ not modelled 20.0 33 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 51 c3sirD_ not modelled 19.5 33 PDB header:hydrolase Chain: D: PDB Molecule:caspase; PDBTitle: crystal structure of drice 52 c3rnvA_ not modelled 19.5 29 PDB header:hydrolase Chain: A: PDB Molecule:helper component proteinase; PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase 53 c1cjyB_ not modelled 19.3 15 PDB header:hydrolase Chain: B: PDB Molecule:protein (cytosolic phospholipase a2); PDBTitle: human cytosolic phospholipase a2 54 d1yt8a4 not modelled 19.2 25 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 55 d1ayia_ not modelled 19.0 18 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 56 c2l9fA_ not modelled 18.9 28 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 57 c2yqeA_ not modelled 18.8 21 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the arid domain of jarid1d protein 58 c3lmoA_ not modelled 18.7 17 PDB header:transferase Chain: A: PDB Molecule:specialized acyl carrier protein; PDBTitle: crystal structure of specialized acyl carrier protein2 (rpa2022) from rhodopseudomonas palustris, northeast3 structural genomics consortium target rpr324 59 c3aj3A_ not modelled 18.4 26 PDB header:hydrolase Chain: A: PDB Molecule:4-pyridoxolactonase; PDBTitle: crystal structure of selenomethionine substituted 4-pyridoxolactonase2 from mesorhizobium loti 60 c3rbnB_ not modelled 18.2 19 PDB header:protein binding Chain: B: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: crystal structure of mutl protein homolog 1 isoform 1 [homo sapiens] 61 c3nhvE_ not modelled 18.2 21 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:bh2092 protein; PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f 62 c1g0dA_ not modelled 17.8 38 PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase 63 c2ql5A_ not modelled 17.2 31 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-7; PDBTitle: crystal structure of caspase-7 with inhibitor ac-dmqd-cho 64 d1rhsa1 not modelled 17.2 18 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 65 c2dnwA_ not modelled 16.8 20 PDB header:transport protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna 66 c2kciA_ not modelled 16.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acyl carrier protein; PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141 67 c3izcN_ not modelled 16.7 27 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 68 c1boiA_ not modelled 16.4 18 PDB header:transferase Chain: A: PDB Molecule:rhodanese; PDBTitle: n-terminally truncated rhodanese 69 d3ci0k2 not modelled 16.2 28 Fold:SAM domain-like Superfamily:GspK insert domain-like Family:GspK insert domain-like 70 c2r2dC_ not modelled 15.3 10 PDB header:hydrolase Chain: C: PDB Molecule:zn-dependent hydrolases; PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens 71 d1ig6a_ not modelled 15.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 72 c1i3oC_ not modelled 14.8 25 PDB header:apoptosis Chain: C: PDB Molecule:caspase 3; PDBTitle: crystal structure of the complex of xiap-bir2 and caspase 3 73 c3eshB_ not modelled 14.6 28 PDB header:hydrolase Chain: B: PDB Molecule:protein similar to metal-dependent hydrolase; PDBTitle: crystal structure of a probable metal-dependent hydrolase2 from staphylococcus aureus. northeast structural genomics3 target zr314 74 c1i51A_ not modelled 14.4 29 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-7 subunit p20; PDBTitle: crystal structure of caspase-7 complexed with xiap 75 c2eg4B_ not modelled 14.3 45 PDB header:transferase Chain: B: PDB Molecule:probable thiosulfate sulfurtransferase; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase 76 d1wlza1 not modelled 14.3 11 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 77 c1wlzD_ not modelled 14.3 11 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 78 c3sipC_ not modelled 14.2 40 PDB header:hydrolase/ligase/hydrolase Chain: C: PDB Molecule:caspase; PDBTitle: crystal structure of drice and diap1-bir1 complex 79 c2ad5B_ not modelled 14.2 20 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 80 c1kv3F_ not modelled 13.9 38 PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form 81 c3ht4B_ not modelled 13.8 27 PDB header:lyase Chain: B: PDB Molecule:aluminum resistance protein; PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213 82 c2cgqA_ not modelled 13.6 15 PDB header:protein transport Chain: A: PDB Molecule:acyl carrier protein acpa; PDBTitle: a putative acyl carrier protein(rv0033) from mycobacterium2 tuberculosis 83 c2no8A_ not modelled 13.2 11 PDB header:immune system Chain: A: PDB Molecule:colicin-e2 immunity protein; PDBTitle: nmr structure analysis of the colicin immuntiy protein im2 84 c1zfuA_ not modelled 12.8 45 PDB header:antimicrobial protein Chain: A: PDB Molecule:plectasin; PDBTitle: plectasin:a peptide antibiotic with therapeutic potential2 from a saprophytic fungus 85 c2d7cD_ not modelled 12.7 33 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain 86 c1pyoA_ not modelled 12.4 27 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-2; PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho 87 c3e4cB_ not modelled 12.3 25 PDB header:hydrolase Chain: B: PDB Molecule:caspase-1; PDBTitle: procaspase-1 zymogen domain crystal strucutre 88 d1p9ea_ not modelled 12.3 22 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Methyl parathion hydrolase 89 c1p9eA_ not modelled 12.3 22 PDB header:hydrolase Chain: A: PDB Molecule:methyl parathion hydrolase; PDBTitle: crystal structure analysis of methyl parathion hydrolase from2 pseudomonas sp wbc-3 90 d1r9la_ not modelled 12.2 29 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 91 c3bwwA_ not modelled 12.1 14 PDB header:metal binding protein Chain: A: PDB Molecule:protein of unknown function duf692/cog3220; PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution 92 d1r3na1 not modelled 11.9 12 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 93 c3on5B_ not modelled 11.9 11 PDB header:oxidoreductase Chain: B: PDB Molecule:bh1974 protein; PDBTitle: crystal structure of a xanthine dehydrogenase (bh1974) from bacillus2 halodurans at 2.80 a resolution 94 c3edqC_ not modelled 11.5 25 PDB header:hydrolase/hydrolase inhibitor Chain: C: PDB Molecule:caspase-3; PDBTitle: crystal structure of caspase-3 with inhibitor ac-ldesd-cho 95 d1h99a1 not modelled 11.5 13 Fold:PTS-regulatory domain, PRD Superfamily:PTS-regulatory domain, PRD Family:PTS-regulatory domain, PRD 96 c2fq2A_ not modelled 11.4 11 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum 97 d1nw9b_ not modelled 11.4 24 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 98 d1qxna_ not modelled 11.4 22 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Single-domain sulfurtransferase 99 c1qduI_ not modelled 11.3 19 PDB header:hydrolase/hydrolase inhibitor Chain: I: PDB Molecule:caspase-8 alpha-chain; PDBTitle: crystal structure of the complex of caspase-8 with the tripeptide2 ketone inhibitor zevd-dcbmk

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0