Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	P	D	N	L	P	V	T	F	G	K	N	D	V	E	I	I	A	R	E	T	L	Y	R	G	F	F	S	L	D	L	Y	R	F	R	H	R	L	F	N	G	Q	M	S	H	E	V	R	R	E	I	F	E	R	G	H	A	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	L	P	F	D	P	V	R	D	E	V	V	L	I	E	Q	I	R	I	A	A	Y	D	T	S	E	T	P	W	L	L	E	M	V	A	G	M	I	E	E	G	E	S	V	E	D	V	A	R	R	E	A	I	E	E	A	G	L	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	K	R	T	K	P	V	L	S	F	L	A	S	P	G	G	T	S	E	R	S	S	I	M	V	G	E	V	D	A	T	T	A	S	G	I	H	G	L	A	D	E	N	E	D	I	R	V	H	V	V	S	R	E	Q	A	Y	Q	W	V
Secondary structure
SS confidence
Disorder																																?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence		E	E	G	K	I	D	N	A	A	S	V	I	A	L	Q	W	L	Q	L	H	H	Q	A	L	K	N	E	W	A
Secondary structure
SS confidence
Disorder																												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1g0s chain A Region: 1 - 209 Aligned: 201 Modelled: 209 Confidence: 100.0% Identity: 99% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1viu chain A Region: 14 - 201 Aligned: 176 Modelled: 188 Confidence: 100.0% Identity: 30% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vhz chain A Region: 14 - 207 Aligned: 178 Modelled: 191 Confidence: 100.0% Identity: 22% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3bm4 chain B Region: 14 - 206 Aligned: 184 Modelled: 192 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr Phyre2 PDB 2yvo chain A Region: 14 - 204 Aligned: 178 Modelled: 191 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 Phyre2 PDB 1mqe chain A Region: 16 - 203 Aligned: 161 Modelled: 184 Confidence: 100.0% Identity: 25% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3q91 chain D Region: 57 - 202 Aligned: 135 Modelled: 146 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) Phyre2 PDB 1v8y chain A Region: 21 - 201 Aligned: 147 Modelled: 153 Confidence: 100.0% Identity: 31% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2w4e chain A Region: 55 - 207 Aligned: 132 Modelled: 153 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans Phyre2 PDB 1sjy chain A Region: 59 - 201 Aligned: 134 Modelled: 143 Confidence: 99.8% Identity: 24% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vk6 chain A domain 2 Region: 56 - 202 Aligned: 129 Modelled: 147 Confidence: 99.8% Identity: 19% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 2jvb chain A Region: 58 - 207 Aligned: 138 Modelled: 145 Confidence: 99.8% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 Phyre2 PDB 2o5f chain A domain 1 Region: 35 - 197 Aligned: 148 Modelled: 163 Confidence: 99.8% Identity: 18% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2fkb chain A domain 1 Region: 36 - 200 Aligned: 152 Modelled: 165 Confidence: 99.8% Identity: 18% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 1nqz chain A Region: 56 - 178 Aligned: 110 Modelled: 123 Confidence: 99.8% Identity: 15% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2gb5 chain B Region: 51 - 201 Aligned: 136 Modelled: 146 Confidence: 99.8% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 2b0v chain A domain 1 Region: 56 - 179 Aligned: 115 Modelled: 124 Confidence: 99.8% Identity: 17% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3dku chain B Region: 58 - 178 Aligned: 111 Modelled: 121 Confidence: 99.8% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 2o1c chain B Region: 52 - 200 Aligned: 130 Modelled: 149 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase Phyre2 PDB 2kdv chain A Region: 58 - 180 Aligned: 113 Modelled: 123 Confidence: 99.7% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli Phyre2 1 d1g0sa_ 2 d1viua_ 3 d1vhza_ 4 c3bm4B_ 5 c2yvoA_ 6 d1mqea_ 7 c3q91D_ 8 d1v8ya_ 9 c2w4eA_ 10 d1sjya_ 11 d1vk6a2 12 c2jvbA_ 13 d2o5fa1 14 d2fkba1 15 d1nqza_ 16 c2gb5B_ 17 d2b0va1 18 c3dkuB_ 19 c2o1cB_ 20 c2kdvA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1g0sa_ 100.0 99 Fold:Nudix Superfamily:Nudix Family:MutT-like 2 d1viua_ 100.0 30 Fold:Nudix Superfamily:Nudix Family:MutT-like 3 d1vhza_ 100.0 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 4 c3bm4B_ 100.0 20 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 5 c2yvoA_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 6 d1mqea_ 100.0 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 7 c3q91D_ 100.0 28 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 8 d1v8ya_ 100.0 31 Fold:Nudix Superfamily:Nudix Family:MutT-like 9 c2w4eA_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 10 d1sjya_ 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 d1vk6a2 99.8 19 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 12 c2jvbA_ 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 13 d2o5fa1 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 14 d2fkba1 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 15 d1nqza_ 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 16 c2gb5B_ 99.8 17 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 17 d2b0va1 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 18 c3dkuB_ 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 19 c2o1cB_ 99.8 18 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 20 c2kdvA_ 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 21 d2a6ta2 not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 22 c2r5wA_ not modelled 99.7 13 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 23 c3h95A_ not modelled 99.7 18 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 24 c2fvvA_ not modelled 99.7 21 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 25 d2fvva1 not modelled 99.7 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 26 d1ppva_ not modelled 99.7 11 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 27 d1ktga_ not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 28 c3cngC_ not modelled 99.7 16 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 29 c3sonB_ not modelled 99.7 24 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 30 d1ryaa_ not modelled 99.7 12 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 31 c2pq1B_ not modelled 99.7 20 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 32 c3grnB_ not modelled 99.7 14 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 33 d1vcda1 not modelled 99.7 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 d2azwa1 not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 35 d1hzta_ not modelled 99.7 11 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 36 c3hhjA_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 37 d1irya_ not modelled 99.7 26 Fold:Nudix Superfamily:Nudix Family:MutT-like 38 c3gg6A_ not modelled 99.7 21 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 39 c2qjoB_ not modelled 99.7 14 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 40 c3fjyB_ not modelled 99.7 24 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 41 c3o8sA_ not modelled 99.7 15 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 42 c3i9xA_ not modelled 99.7 15 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 43 c3gz8C_ not modelled 99.7 16 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 44 c3id9B_ not modelled 99.7 19 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 45 d1jkna_ not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 46 c3gwyA_ not modelled 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 47 d2fb1a2 not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 48 c2qkmF_ not modelled 99.7 16 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 49 c3q4iA_ not modelled 99.6 12 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 50 c3ef5A_ not modelled 99.6 18 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 51 c3fcmA_ not modelled 99.6 13 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 52 c3fk9B_ not modelled 99.6 19 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 53 d2b06a1 not modelled 99.6 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 54 c2yyhC_ not modelled 99.6 25 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 55 c3exqA_ not modelled 99.6 18 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 56 d1xsba_ not modelled 99.6 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 57 d1puna_ not modelled 99.6 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 58 c3r03B_ not modelled 99.6 21 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 59 c3e57A_ not modelled 99.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 60 c3n77B_ not modelled 99.6 17 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 61 c2pqvA_ not modelled 99.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 62 c3gz6A_ not modelled 99.5 15 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 63 c3dupB_ not modelled 99.5 14 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 64 c3f6aA_ not modelled 99.5 26 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 65 d2fmla2 not modelled 99.5 22 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 66 c2fb1A_ not modelled 99.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 67 c2i6kA_ not modelled 99.5 18 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 68 c3edsA_ not modelled 99.5 23 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 69 d1k2ea_ not modelled 99.5 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 70 c3f13A_ not modelled 99.4 20 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 71 c3rh7A_ not modelled 99.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 72 c2fmlB_ not modelled 99.4 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 73 c2pnyA_ not modelled 99.3 16 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 74 d1q33a_ not modelled 99.3 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 75 d1u20a1 not modelled 99.3 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 76 d1x51a1 not modelled 99.2 8 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 77 c3qsjA_ not modelled 99.2 18 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 78 c1rrqA_ not modelled 99.1 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 79 c2j8qB_ not modelled 99.0 9 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 80 d1rrqa2 not modelled 99.0 16 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 81 c3couA_ not modelled 98.4 16 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 98.0 20 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 83.2 14 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d2dexx3 not modelled 12.8 20 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain 85 c1w63T_ not modelled 12.7 14 PDB header:endocytosis Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a PDBTitle: ap1 clathrin adaptor core 86 c2hf6A_ not modelled 11.6 10 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit zeta-1; PDBTitle: solution structure of human zeta-cop 87 c3h76A_ not modelled 11.5 33 PDB header:transferase Chain: A: PDB Molecule:pqs biosynthetic enzyme; PDBTitle: crystal structure of pqsd, a key enzyme in pseudomonas2 aeruginosa quinolone signal biosynthesis pathway 88 d1gw5m2 not modelled 10.6 19 Fold:Profilin-like Superfamily:SNARE-like Family:Clathrin coat assembly domain 89 d1gw5s_ not modelled 10.3 11 Fold:Profilin-like Superfamily:SNARE-like Family:Clathrin coat assembly domain 90 c2jswA_ not modelled 8.2 17 PDB header:actin-binding protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin c-terminal actin binding site 91 d1aopa2 not modelled 7.9 13 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 92 d2fug21 not modelled 7.4 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 93 c3s3lB_ not modelled 7.2 17 PDB header:transferase Chain: B: PDB Molecule:cerj; PDBTitle: crystal structure of cerj from streptomyces tendae 94 c3lx6B_ not modelled 6.6 21 PDB header:transferase Chain: B: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: structure of probable cytosine-specific methyltransferase from2 shigella flexneri 95 d1ub7a1 not modelled 6.4 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 96 d1bm8a_ not modelled 6.1 20 Fold:DNA-binding domain of Mlu1-box binding protein MBP1 Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1 Family:DNA-binding domain of Mlu1-box binding protein MBP1 97 c3lmaC_ not modelled 5.9 29 PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. 98 c1w63P_ not modelled 5.7 17 PDB header:endocytosis Chain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit; PDBTitle: ap1 clathrin adaptor core 99 d1p9qc3 not modelled 5.2 25 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0