Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

R

K

I

F

L

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L

L

L

V

A

L

S

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V

A

H

S

E

G

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Q

E

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A

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L

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W

H

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A

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G

E

D

A

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S

Q

S

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N

Y

P

A

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S

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N

M

A

D

D

Secondary structure

SS confidence

Disorder

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?

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?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

Q

N

I

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A

Q

I

R

G

K

I

K

N

Y

A

A

A

G

K

V

Q

Q

G

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L

V

V

N

G

A

S

M

P

Q

R

I

E

S

D

G

S

F

A

R

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Y

I

F

T

E

G

S

N

S

V

Q

V

I

S

P

Secondary structure

SS confidence

Disorder

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?

Disorder confidence

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130

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140

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150

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160

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170

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180

Sequence

D

G

Q

S

R

Q

K

M

Q

F

Y

S

T

P

G

T

G

T

I

R

A

R

L

R

L

V

L

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W

D

T

D

N

T

D

L

D

L

H

V

V

T

P

D

G

E

H

A

W

Y

G

N

T

V

L

K

N

S

G

A

Secondary structure

SS confidence

Disorder

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?

Disorder confidence

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190

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200

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210

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220

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230

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240

Sequence

L

D

M

D

V

T

T

G

Y

G

P

E

I

F

A

M

P

A

P

I

H

G

R

Y

Q

V

Y

I

N

Y

Y

G

G

R

S

E

T

E

L

T

T

A

Q

L

T

L

I

T

D

E

G

S

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N

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F

Secondary structure

SS confidence

Disorder

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?

Disorder confidence

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250

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Sequence

I

V

P

M

R

N

A

G

E

L

T

L

V

K

S

F

D

W

Secondary structure

SS confidence

Disorder

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1wmd chain A domain 1 Region: 139 - 225 Aligned: 83 Modelled: 87 Confidence: 98.4% Identity: 23% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Proprotein convertase P-domain Phyre2 PDB 3afg chain A Region: 103 - 215 Aligned: 93 Modelled: 113 Confidence: 96.1% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:subtilisin-like serine protease; PDBTitle: crystal structure of pron-tk-sp from thermococcus kodakaraensis Phyre2 PDB 1wme chain A Region: 139 - 225 Aligned: 83 Modelled: 87 Confidence: 94.8% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:protease; PDBTitle: crystal structure of alkaline serine protease kp-43 from bacillus sp.2 ksm-kp43 (1.50 angstrom, 293 k) Phyre2 PDB 2qng chain A Region: 142 - 197 Aligned: 56 Modelled: 52 Confidence: 94.4% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sav2460; PDBTitle: crytal structure of unknown function protein sav2460 Phyre2 PDB 2kxv chain A Region: 142 - 197 Aligned: 56 Modelled: 56 Confidence: 93.1% Identity: 25% PDB header:unknown function Chain: A: PDB Molecule:tellurite resistance protein; PDBTitle: nmr structure and calcium-binding properties of the tellurite2 resistance protein terd from klebsiella pneumoniae Phyre2 PDB 3ibz chain A Region: 142 - 197 Aligned: 56 Modelled: 56 Confidence: 93.1% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative tellurium resistant like protein terd; PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2) Phyre2 PDB 2qz7 chain B Region: 142 - 197 Aligned: 56 Modelled: 52 Confidence: 91.3% Identity: 21% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein sco6318; PDBTitle: the crystal structure of a homologue of telluride resistance protein2 (terd), sco6318 from streptomyces coelicolor a3(2) Phyre2 PDB 3jqx chain A Region: 138 - 223 Aligned: 71 Modelled: 72 Confidence: 90.7% Identity: 13% PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium Phyre2 PDB 1p8j chain A domain 1 Region: 109 - 227 Aligned: 104 Modelled: 119 Confidence: 89.8% Identity: 19% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Proprotein convertase P-domain Phyre2 PDB 1p8j chain B Region: 138 - 227 Aligned: 81 Modelled: 90 Confidence: 87.7% Identity: 21% PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:furin precursor; PDBTitle: crystal structure of the proprotein convertase furin Phyre2 PDB 1r64 chain A Region: 141 - 237 Aligned: 90 Modelled: 97 Confidence: 86.1% Identity: 9% PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:kexin; PDBTitle: the 2.2 a crystal structure of kex2 protease in complex with ac-arg-2 glu-lys-boroarg peptidyl boronic acid inhibitor Phyre2 PDB 3isy chain A Region: 138 - 226 Aligned: 88 Modelled: 89 Confidence: 78.7% Identity: 13% PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution Phyre2 PDB 2id4 chain A domain 1 Region: 138 - 227 Aligned: 83 Modelled: 90 Confidence: 76.6% Identity: 11% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Proprotein convertase P-domain Phyre2 PDB 1nqj chain B Region: 138 - 230 Aligned: 72 Modelled: 80 Confidence: 75.9% Identity: 13% Fold: CUB-like Superfamily: Collagen-binding domain Family: Collagen-binding domain Phyre2 PDB 2oxa chain A Region: 138 - 257 Aligned: 108 Modelled: 120 Confidence: 75.1% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:extracellular serine protease; PDBTitle: crystal structure of serine protease of aeromonas sobria Phyre2 PDB 1tdq chain A domain 2 Region: 145 - 225 Aligned: 73 Modelled: 81 Confidence: 74.9% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: Fibronectin type III Family: Fibronectin type III Phyre2 PDB 1h8l chain A Region: 60 - 119 Aligned: 54 Modelled: 60 Confidence: 73.1% Identity: 15% PDB header:carboxypeptidase Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882; PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa Phyre2 PDB 2yrz chain A Region: 145 - 233 Aligned: 81 Modelled: 89 Confidence: 72.9% Identity: 11% PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-4; PDBTitle: solution structure of the fibronectin type iii domain of2 human integrin beta-4 Phyre2 PDB 2mfn chain A domain 1 Region: 145 - 226 Aligned: 72 Modelled: 82 Confidence: 71.8% Identity: 17% Fold: Immunoglobulin-like beta-sandwich Superfamily: Fibronectin type III Family: Fibronectin type III Phyre2 PDB 1nqj chain A Region: 139 - 213 Aligned: 59 Modelled: 59 Confidence: 67.5% Identity: 14% Fold: CUB-like Superfamily: Collagen-binding domain Family: Collagen-binding domain Phyre2 1 d1wmda1 2 c3afgA_ 3 c1wmeA_ 4 c2qngA_ 5 c2kxvA_ 6 c3ibzA_ 7 c2qz7B_ 8 c3jqxA_ 9 d1p8ja1 10 c1p8jB_ 11 c1r64A_ 12 c3isyA_ 13 d2id4a1 14 d1nqjb_ 15 c2oxaA_ 16 d1tdqa2 17 c1h8lA_ 18 c2yrzA_ 19 d2mfna1 20 d1nqja_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wmda1 98.4 23 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Proprotein convertase P-domain 2 c3afgA_ 96.1 25 PDB header:hydrolase Chain: A: PDB Molecule:subtilisin-like serine protease; PDBTitle: crystal structure of pron-tk-sp from thermococcus kodakaraensis 3 c1wmeA_ 94.8 23 PDB header:hydrolase Chain: A: PDB Molecule:protease; PDBTitle: crystal structure of alkaline serine protease kp-43 from bacillus sp.2 ksm-kp43 (1.50 angstrom, 293 k) 4 c2qngA_ 94.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sav2460; PDBTitle: crytal structure of unknown function protein sav2460 5 c2kxvA_ 93.1 25 PDB header:unknown function Chain: A: PDB Molecule:tellurite resistance protein; PDBTitle: nmr structure and calcium-binding properties of the tellurite2 resistance protein terd from klebsiella pneumoniae 6 c3ibzA_ 93.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative tellurium resistant like protein terd; PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2) 7 c2qz7B_ 91.3 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein sco6318; PDBTitle: the crystal structure of a homologue of telluride resistance protein2 (terd), sco6318 from streptomyces coelicolor a3(2) 8 c3jqxA_ 90.7 13 PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium 9 d1p8ja1 89.8 19 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Proprotein convertase P-domain 10 c1p8jB_ 87.7 21 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:furin precursor; PDBTitle: crystal structure of the proprotein convertase furin 11 c1r64A_ 86.1 9 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:kexin; PDBTitle: the 2.2 a crystal structure of kex2 protease in complex with ac-arg-2 glu-lys-boroarg peptidyl boronic acid inhibitor 12 c3isyA_ 78.7 13 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 13 d2id4a1 76.6 11 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Proprotein convertase P-domain 14 d1nqjb_ 75.9 13 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 15 c2oxaA_ 75.1 17 PDB header:hydrolase Chain: A: PDB Molecule:extracellular serine protease; PDBTitle: crystal structure of serine protease of aeromonas sobria 16 d1tdqa2 74.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 17 c1h8lA_ 73.1 15 PDB header:carboxypeptidase Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882; PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa 18 c2yrzA_ 72.9 11 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-4; PDBTitle: solution structure of the fibronectin type iii domain of2 human integrin beta-4 19 d2mfna1 71.8 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 20 d1nqja_ 67.5 14 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 21 c3cu7A_ not modelled 64.1 18 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 22 d1fnha2 not modelled 62.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 23 d2d7pa1 not modelled 61.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 24 d1tdqa3 not modelled 60.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 25 d1fnfa1 not modelled 56.3 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 26 d1ulva2 not modelled 55.4 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 27 d1qr4a2 not modelled 54.8 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 28 d1tena_ not modelled 54.1 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 29 d1h8la1 not modelled 54.0 15 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 30 c3mn8A_ not modelled 53.0 20 PDB header:hydrolase Chain: A: PDB Molecule:lp15968p; PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short 31 c2jf1A_ not modelled 52.7 9 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide 32 c2dleA_ not modelled 48.9 20 PDB header:hydrolase Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase eta; PDBTitle: solution structure of the fourth fn3 domain of human2 receptor-type tyrosine-protein phosphatase eta 33 d1nkga1 not modelled 48.6 14 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Rhamnogalacturonase B, RhgB, middle domain 34 c2b39B_ not modelled 47.8 14 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 35 d1fnha3 not modelled 45.1 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 36 d2cuia1 not modelled 42.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 37 c2qbwA_ not modelled 42.3 9 PDB header:unknown function Chain: A: PDB Molecule:pdz-fibronectin fusion protein; PDBTitle: the crystal structure of pdz-fibronectin fusion protein 38 d2dj4a1 not modelled 41.4 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 39 c2eddA_ not modelled 40.5 11 PDB header:apoptosis Chain: A: PDB Molecule:netrin receptor dcc; PDBTitle: solution structure of the fifth fibronectin type iii domain2 of human netrin receptor dcc 40 c1ttfA_ not modelled 39.7 15 PDB header:glycoprotein Chain: A: PDB Molecule:fibronectin; PDBTitle: the three-dimensional structure of the tenth type iii2 module of fibronectin: an insight into rgd-mediated3 interactions 41 c1ttgA_ not modelled 39.7 15 PDB header:glycoprotein Chain: A: PDB Molecule:fibronectin; PDBTitle: the three-dimensional structure of the tenth type iii2 module of fibronectin: an insight into rgd-mediated3 interactions 42 c2nsmA_ not modelled 39.1 19 PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase n catalytic chain; PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain 43 c2h45A_ not modelled 39.1 18 PDB header:cell adhesion, structural protein Chain: A: PDB Molecule:fibronectin; PDBTitle: solution structure of the second type iii domain of human2 fibronectin: ensemble of 25 structures 44 c2qkiA_ not modelled 38.2 11 PDB header:immune system/hydrolase inhibitor Chain: A: PDB Molecule:complement c3; PDBTitle: human c3c in complex with the inhibitor compstatin 45 d1x5ja1 not modelled 37.8 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 46 d1fnaa_ not modelled 34.6 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 47 c1fnaA_ not modelled 34.6 12 PDB header:cell adhesion protein Chain: A: PDB Molecule:fibronectin cell-adhesion module type iii-10; PDBTitle: crystal structure of the tenth type iii cell adhesion2 module of human fibronectin 48 c2k7qA_ not modelled 33.6 14 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19 49 d2e9ia1 not modelled 32.1 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 50 d2dn7a1 not modelled 31.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 51 d2dmca1 not modelled 30.5 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 52 c3rzwA_ not modelled 29.8 11 PDB header:protein binding Chain: A: PDB Molecule:monobody ysmb-9; PDBTitle: crystal structure of the monobody ysmb-9 bound to human sumo1 53 d2j3sa2 not modelled 27.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 54 d2dica1 not modelled 27.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 55 d3csba1 not modelled 26.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 56 d2cuha1 not modelled 26.6 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 57 c3b83B_ not modelled 25.6 11 PDB header:unknown function Chain: B: PDB Molecule:ten-d3; PDBTitle: tba 58 c3k2mD_ not modelled 25.2 11 PDB header:signaling protein/protein binding Chain: D: PDB Molecule:monobody ha4; PDBTitle: crystal structure of monobody ha4/abl1 sh2 domain complex 59 d2mfna2 not modelled 24.6 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 60 d1j8ka_ not modelled 24.3 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 61 c2ck2B_ not modelled 23.7 16 PDB header:signaling protein Chain: B: PDB Molecule:human fibronectin; PDBTitle: structure of core-swapped mutant of fibronectin 62 c2ee3A_ not modelled 23.7 10 PDB header:signaling protein Chain: A: PDB Molecule:collagen alpha-1(xx) chain; PDBTitle: solution structures of the fn3 domain of human collagen2 alpha-1(xx) chain 63 d1fnha1 not modelled 23.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 64 c1qfhB_ not modelled 22.8 15 PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6 65 d2crza1 not modelled 22.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 66 d1tdqa1 not modelled 22.4 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 67 c2yuwA_ not modelled 21.5 7 PDB header:cell adhesion Chain: A: PDB Molecule:myosin binding protein c, slow type; PDBTitle: solution structure of 2nd fibronectin domain of slow type2 myosin-binding protein c 68 d1v05a_ not modelled 21.0 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 69 d2di8a1 not modelled 20.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 70 d1fnfa3 not modelled 19.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 71 c2vzqA_ not modelled 17.6 19 PDB header:hydrolase Chain: A: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: c-terminal cbm35 from amycolatopsis orientalis exo-2 chitosanase csxa in complex with digalacturonic acid 72 c3qhtD_ not modelled 17.5 9 PDB header:de novo protein Chain: D: PDB Molecule:monobody ysmb-1; PDBTitle: crystal structure of the monobody ysmb-1 bound to yeast sumo 73 c2wy3B_ not modelled 17.2 16 PDB header:immune system/viral protein Chain: B: PDB Molecule:uncharacterized protein ul16; PDBTitle: structure of the hcmv ul16-micb complex elucidates select2 binding of a viral immunoevasin to diverse nkg2d ligands 74 c3uyoD_ not modelled 16.3 20 PDB header:signaling protein/protein binding Chain: D: PDB Molecule:monobody sh13; PDBTitle: crystal structure of monobody sh13/abl1 sh2 domain complex 75 c3hrzA_ not modelled 16.1 14 PDB header:immune system Chain: A: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 76 d2j2za2 not modelled 15.7 15 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 77 d1owwa_ not modelled 15.2 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 78 c2k7pA_ not modelled 15.1 19 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 16-17 79 d2d7na1 not modelled 15.0 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 80 d1ueya_ not modelled 14.6 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 81 d2dmba1 not modelled 14.0 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 82 d1pk6a_ not modelled 13.7 9 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 83 c2qk7A_ not modelled 13.5 10 PDB header:toxin Chain: A: PDB Molecule:gamma-hemolysin component a; PDBTitle: a covalent s-f heterodimer of staphylococcal gamma-hemolysin 84 d1x5la1 not modelled 13.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 85 c3le4A_ not modelled 12.8 29 PDB header:nuclear protein Chain: A: PDB Molecule:microprocessor complex subunit dgcr8; PDBTitle: crystal structure of the dgcr8 dimerization domain 86 c1qd6C_ not modelled 12.6 19 PDB header:membrane protein Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla)); PDBTitle: outer membrane phospholipase a from escherichia coli 87 d2diaa1 not modelled 12.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 88 c3ohnA_ not modelled 12.3 18 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain 89 d2djsa1 not modelled 12.2 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 90 c2dlhA_ not modelled 11.9 11 PDB header:hydrolase Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase delta; PDBTitle: solution structure of the second fn3 domain of human2 receptor-type tyrosine-protein phosphatase delta 91 d1fnfa2 not modelled 11.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 92 d1x5xa1 not modelled 11.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 93 c1fw3A_ not modelled 11.3 20 PDB header:hydrolase, membrane protein Chain: A: PDB Molecule:outer membrane phospholipase a; PDBTitle: outer membrane phospholipase a from escherichia coli 94 d1x5ya1 not modelled 11.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 95 c3osvC_ not modelled 10.9 15 PDB header:structural protein Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd; PDBTitle: the crytsal structure of flgd from p. aeruginosa 96 c2brqB_ not modelled 10.6 16 PDB header:structural protein Chain: B: PDB Molecule:filamin a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide 97 c2aivA_ not modelled 10.5 17 PDB header:transport protein Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p 98 d1x5aa1 not modelled 10.5 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 99 c2e9jA_ not modelled 10.5 17 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0