Email l.a.kelley@imperial.ac.uk Description P0AG00 Date Thu Jan 5 11:27:42 GMT 2012 Unique Job ID 4018e5160322fa19

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3b8ma1 99.7 18 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 2 d3b8oa1 99.6 94 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 3 d3b8pa1 99.2 26 Fold:Ferredoxin-like Superfamily:Bacterial polysaccharide co-polymerase-like Family:FepE-like 4 c2yl4A_ 67.4 6 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 5 d2hyda2 60.3 9 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 6 c2rmzA_ 56.7 18 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 7 c2hydB_ 46.8 9 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 8 d1pf4a2 43.5 18 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 9 d1pw4a_ 43.4 18 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 10 c3hd7A_ 39.0 19 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 11 c3ij4A_ 35.2 30 PDB header:transport protein Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal; PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state 12 d3b60a2 32.1 34 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 13 c3g5uB_ 29.8 14 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 14 c2kncA_ 27.8 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 15 d2r6gf1 22.8 15 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 16 c2qtsA_ 21.1 23 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 17 c3b5wE_ 21.1 34 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 18 c2y69Z_ 20.7 20 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 19 d1v54m_ 20.4 20 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 20 c2yvxD_ 19.5 14 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 21 c2k21A_ not modelled 16.5 19 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 22 d1xrda1 not modelled 16.5 16 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 23 d1rhzb_ not modelled 15.9 15 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 24 c2e75E_ not modelled 15.8 17 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 25 d2e74e1 not modelled 15.8 17 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 26 c1vf5R_ not modelled 15.8 17 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 27 c2e76E_ not modelled 15.8 17 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 28 c2e74E_ not modelled 15.8 17 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 29 d1v54d_ not modelled 15.1 5 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 30 c2y69Q_ not modelled 14.8 5 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 31 c3b5xB_ not modelled 13.4 19 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 32 c1vf5E_ not modelled 13.4 18 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 33 c3ixzB_ not modelled 11.9 19 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 34 c2k1aA_ not modelled 11.8 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 35 c3arct_ not modelled 11.4 14 PDB header:electron transport, photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 36 c3k07A_ not modelled 11.1 10 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 37 d2alea1 not modelled 10.0 22 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 38 d1ctja_ not modelled 9.8 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 39 c3si5X_ not modelled 9.8 25 PDB header:cell cycle Chain: X: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex 40 c2kncB_ not modelled 9.8 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 41 c2l2tA_ not modelled 9.6 30 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 42 c2o01L_ not modelled 9.2 27 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 43 d1c6ra_ not modelled 8.8 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 44 d1v54g_ not modelled 8.5 8 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 45 d1xmec1 not modelled 8.4 21 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 46 d1nwaa_ not modelled 8.4 19 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 47 c1nwaA_ not modelled 8.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 48 c2wwbB_ not modelled 8.2 21 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 49 d1y5ic1 not modelled 7.8 34 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 50 c3b8eB_ not modelled 7.7 20 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 51 c3sc0A_ not modelled 7.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin 52 c1kqfB_ not modelled 7.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 53 c3ghfA_ not modelled 7.4 26 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 54 c2kvlA_ not modelled 7.3 11 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 55 c2wwbC_ not modelled 7.3 16 PDB header:ribosome Chain: C: PDB Molecule:protein transport protein sec61 subunit beta; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 56 c1fvaA_ not modelled 7.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 57 c2j89A_ not modelled 7.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 58 c3bqhA_ not modelled 7.1 6 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 59 c2k1lA_ not modelled 7.0 21 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 60 c2k1kB_ not modelled 7.0 21 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 61 c2k1lB_ not modelled 7.0 21 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 62 c2k1kA_ not modelled 7.0 21 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 63 c2ht2B_ not modelled 6.9 21 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 64 d1ff3c_ not modelled 6.8 13 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 65 d1v54l_ not modelled 6.7 19 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) Family:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 66 d1fvga_ not modelled 6.7 12 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 67 c1ps9A_ not modelled 6.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 68 c1xl6B_ not modelled 6.6 6 PDB header:metal transport Chain: B: PDB Molecule:inward rectifier potassium channel; PDBTitle: intermediate gating structure 2 of the inwardly rectifying k+ channel2 kirbac3.1 69 d1jr1a4 not modelled 6.6 21 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 70 d1ff3a_ not modelled 6.5 12 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 71 c1amlA_ not modelled 6.5 33 PDB header:serine protease inhibitor Chain: A: PDB Molecule:amyloid a4; PDBTitle: the alzheimer`s disease amyloid a4 peptide (residues 1-40) 72 c3pilA_ not modelled 6.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 73 d1cpca_ not modelled 6.3 8 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 74 c3a0bx_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 75 c3a0bX_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 76 c3a0hX_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 77 c3a0hx_ not modelled 6.1 17 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 78 d1xk4c1 not modelled 6.0 11 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 79 d1otsa_ not modelled 6.0 22 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 80 d1jboa_ not modelled 6.0 5 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 81 c3dmiA_ not modelled 5.9 11 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution 82 d2i5nh2 not modelled 5.8 11 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 83 c2l9uA_ not modelled 5.8 16 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 84 c2kluA_ not modelled 5.7 15 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 85 c2gqcA_ not modelled 5.7 23 PDB header:hydrolase Chain: A: PDB Molecule:rhomboid intramembrane protease; PDBTitle: solution structure of the n-terminal domain of rhomboid intramembrane2 protease from p. aeruginosa 86 c1s5lx_ not modelled 5.6 17 PDB header:photosynthesis Chain: X: PDB Molecule:photosystem ii psbx protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 87 c1kveA_ not modelled 5.6 31 PDB header:toxin Chain: A: PDB Molecule:smk toxin; PDBTitle: killer toxin from halotolerant yeast 88 c3kdpG_ not modelled 5.6 25 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 89 c3kdpH_ not modelled 5.6 25 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 90 c2k9yB_ not modelled 5.6 25 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 91 c2k9yA_ not modelled 5.6 25 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 92 c1ql1A_ not modelled 5.5 26 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 93 c1ronA_ not modelled 5.5 19 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide y; PDBTitle: nmr solution structure of human neuropeptide y 94 d1f1fa_ not modelled 5.4 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 95 c3e0mB_ not modelled 5.3 19 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 96 d2guka1 not modelled 5.3 38 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 97 d1gdva_ not modelled 5.3 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 98 d1w36c3 not modelled 5.3 25 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecC), C-terminal domain 99 c3dr0B_ not modelled 5.2 8 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002