Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	F	A	A	V	I	A	V	M	A	L	C	S	A	P	V	M	A	A	E	Q	G	G	F	S	G	P	S	A	T	Q	S	Q	A	G	G	F	Q	G	P	N	G	S	V	T	T	V	E	S	A	K	S	L	R	D	D	T	W
Secondary structure
SS confidence
Disorder		?	?	?																		?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	L	R	G	N	I	V	E	R	I	S	D	D	L	Y	V	F	K	D	A	S	G	T	I	N	V	D	I	D	H	K	R	W	N	G	V	T	V	T	P	K	D	T	V	E	I	Q	G	E	V	D	K	D	W	N	S	V	E	I
Secondary structure
SS confidence
Disorder												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130
Sequence		D	V	K	Q	I	R	K	V	N	P
Secondary structure
SS confidence
Disorder									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nnx chain A Region: 36 - 128 Aligned: 93 Modelled: 93 Confidence: 100.0% Identity: 97% Fold: OB-fold Superfamily: Hypothetical protein YgiW Family: Hypothetical protein YgiW Phyre2 PDB 1l0w chain A domain 1 Region: 48 - 130 Aligned: 82 Modelled: 83 Confidence: 97.4% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1b8a chain A domain 1 Region: 48 - 130 Aligned: 83 Modelled: 83 Confidence: 97.4% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1wyd chain B Region: 48 - 130 Aligned: 83 Modelled: 83 Confidence: 97.3% Identity: 17% PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii Phyre2 PDB 1b8a chain B Region: 48 - 130 Aligned: 83 Modelled: 83 Confidence: 97.2% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Phyre2 PDB 1c0a chain A domain 1 Region: 48 - 130 Aligned: 80 Modelled: 83 Confidence: 97.1% Identity: 19% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1n9w chain A domain 1 Region: 47 - 130 Aligned: 79 Modelled: 84 Confidence: 97.0% Identity: 20% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 3bju chain B Region: 53 - 130 Aligned: 78 Modelled: 78 Confidence: 96.8% Identity: 15% PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Phyre2 PDB 1eqr chain C Region: 48 - 130 Aligned: 83 Modelled: 83 Confidence: 96.8% Identity: 17% PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli Phyre2 PDB 3e9h chain B Region: 58 - 130 Aligned: 73 Modelled: 73 Confidence: 96.8% Identity: 16% PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine Phyre2 PDB 3m4q chain A Region: 57 - 130 Aligned: 74 Modelled: 74 Confidence: 96.7% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) Phyre2 PDB 1e1o chain A domain 1 Region: 58 - 130 Aligned: 73 Modelled: 73 Confidence: 96.6% Identity: 16% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 3i7f chain A Region: 49 - 130 Aligned: 82 Modelled: 82 Confidence: 96.6% Identity: 23% PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Phyre2 PDB 1bbu chain A domain 1 Region: 58 - 130 Aligned: 73 Modelled: 73 Confidence: 96.5% Identity: 15% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 3kf6 chain A Region: 59 - 128 Aligned: 70 Modelled: 70 Confidence: 96.5% Identity: 19% PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex Phyre2 PDB 1n9w chain A Region: 53 - 130 Aligned: 74 Modelled: 78 Confidence: 96.4% Identity: 19% PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus Phyre2 PDB 1eov chain A domain 1 Region: 47 - 130 Aligned: 84 Modelled: 84 Confidence: 96.2% Identity: 15% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1x55 chain A Region: 57 - 130 Aligned: 74 Modelled: 74 Confidence: 96.2% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue Phyre2 PDB 1e22 chain A Region: 58 - 130 Aligned: 73 Modelled: 73 Confidence: 96.0% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp Phyre2 PDB 2pi2 chain A domain 1 Region: 59 - 128 Aligned: 66 Modelled: 70 Confidence: 96.0% Identity: 21% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 1 d1nnxa_ 2 d1l0wa1 3 d1b8aa1 4 c1wydB_ 5 c1b8aB_ 6 d1c0aa1 7 d1n9wa1 8 c3bjuB_ 9 c1eqrC_ 10 c3e9hB_ 11 c3m4qA_ 12 d1e1oa1 13 c3i7fA_ 14 d1bbua1 15 c3kf6A_ 16 c1n9wA_ 17 d1eova1 18 c1x55A_ 19 c1e22A_ 20 d2pi2a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nnxa_ 100.0 97 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 2 d1l0wa1 97.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 3 d1b8aa1 97.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 4 c1wydB_ 97.3 17 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 5 c1b8aB_ 97.2 18 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 6 d1c0aa1 97.1 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 7 d1n9wa1 97.0 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 8 c3bjuB_ 96.8 15 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 9 c1eqrC_ 96.8 17 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 10 c3e9hB_ 96.8 16 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 11 c3m4qA_ 96.7 19 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 12 d1e1oa1 96.6 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 13 c3i7fA_ 96.6 23 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 14 d1bbua1 96.5 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 15 c3kf6A_ 96.5 19 PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 16 c1n9wA_ 96.4 19 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 17 d1eova1 96.2 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 18 c1x55A_ 96.2 16 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 19 c1e22A_ 96.0 18 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 20 d2pi2a1 96.0 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 21 c1efwA_ not modelled 95.7 17 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 22 c2pi2A_ not modelled 95.6 21 PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 23 c2xgtB_ not modelled 95.2 21 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 24 c3mxnB_ not modelled 95.0 17 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 25 c3e0eA_ not modelled 94.9 23 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 26 c1asyA_ not modelled 94.6 17 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 27 d1krta_ not modelled 93.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 28 c3dm3A_ not modelled 92.5 18 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 29 d1gm5a2 not modelled 91.8 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 30 d2oq0a1 not modelled 91.1 16 Fold:OB-fold Superfamily:HIN-2000 domain-like Family:HIN-200/IF120x domain 31 c3kf8C_ not modelled 90.2 29 PDB header:structural protein Chain: C: PDB Molecule:protein stn1; PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex 32 c2oq0D_ not modelled 86.0 16 PDB header:protein binding Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16 33 c3b6yB_ not modelled 85.4 19 PDB header:protein binding Chain: B: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the second hin-200 domain of interferon-inducible2 protein 16 34 c2k50A_ not modelled 81.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 35 c3e0jG_ not modelled 79.5 18 PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 36 c2k75A_ not modelled 74.2 16 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ta0387; PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b. 37 c1gm5A_ not modelled 71.5 14 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 38 d2pi2e1 not modelled 54.5 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 39 c3hbcA_ not modelled 51.4 15 PDB header:hydrolase Chain: A: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of choloylglycine hydrolase from bacteroides2 thetaiotaomicron vpi 40 c2pqaB_ not modelled 49.9 14 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 41 c2kenA_ not modelled 46.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a. 42 d1t9ha1 not modelled 44.7 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 43 c2hezB_ not modelled 38.9 17 PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase 44 c3cp0A_ not modelled 37.7 21 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 45 d1cz5a1 not modelled 37.0 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 46 c2k14A_ not modelled 36.9 20 PDB header:unknown function Chain: A: PDB Molecule:yuaf protein; PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis 47 d1jt8a_ not modelled 36.6 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 c3h43F_ not modelled 32.2 21 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 49 c3ka5A_ not modelled 31.1 28 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 50 c2wg6L_ not modelled 27.7 19 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 51 c3obyB_ not modelled 27.2 18 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 52 d2pvaa_ not modelled 25.1 44 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase 53 d2do3a1 not modelled 25.0 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 54 d2cs7a1 not modelled 24.6 16 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 55 d2exda1 not modelled 24.1 18 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 56 c2oqkA_ not modelled 24.0 19 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 57 c2bx6A_ not modelled 23.8 10 PDB header:transduction protein Chain: A: PDB Molecule:xrp2 protein; PDBTitle: crystal structure of the human retinitis pigmentosa2 protein 2 (rp2) 58 d1qcsa1 not modelled 23.4 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 59 c2bjgB_ not modelled 23.3 22 PDB header:hydrolase Chain: B: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of conjugated bile acid hydrolase from2 clostridium perfringens in complex with reaction products3 taurine and deoxycholate 60 d1qkia2 not modelled 22.9 27 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 61 c2jqoA_ not modelled 22.0 15 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein yoba; PDBTitle: nmr solution structure of bacillus subtilis yoba 21-120:2 northeast structural genomics consortium target sr547 62 c3k2tA_ not modelled 21.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 63 c1cz5A_ not modelled 21.3 23 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 64 d1h9aa2 not modelled 21.2 33 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 65 c1ltlE_ not modelled 20.0 23 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 66 d1vr3a1 not modelled 19.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 67 c3f6hA_ not modelled 19.4 12 PDB header:transferase Chain: A: PDB Molecule:alpha-isopropylmalate synthase; PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii 68 d2vgna1 not modelled 19.0 17 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 69 d1g4ma2 not modelled 18.8 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 70 c3e0dA_ not modelled 18.7 19 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 71 d1sr3a_ not modelled 18.3 19 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 72 c3lgjA_ not modelled 18.3 23 PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of single-stranded binding protein (ssb) from2 bartonella henselae 73 c1h9aA_ not modelled 18.3 33 PDB header:oxidoreductase (choh(d) - nad(p)) Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase; PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp 74 c2k5hA_ not modelled 18.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 75 d1ltla_ not modelled 18.0 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 76 d1v1qa_ not modelled 17.8 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 77 c2vgmA_ not modelled 17.5 13 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 78 c2bhlB_ not modelled 17.5 27 PDB header:oxidoreductase (choh(d)-nadp) Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase2 (deletion variant) complexed with glucose-6-phosphate 79 d2cu3a1 not modelled 17.4 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 80 d1u0la1 not modelled 17.1 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 81 d1o7ia_ not modelled 17.1 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 82 c2kl0A_ not modelled 16.5 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 83 d1cf1a2 not modelled 16.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 84 c3cl5A_ not modelled 16.0 38 PDB header:hydrolase Chain: A: PDB Molecule:hemagglutinin-esterase; PDBTitle: structure of coronavirus hemagglutinin-esterase in complex with 4,9-o-2 diacetyl sialic acid 85 c1qkiE_ not modelled 15.9 27 PDB header:oxidoreductase Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase2 (variant canton r459l) complexed with structural nadp+ 86 d1j6qa_ not modelled 15.9 21 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 87 c1j6qA_ not modelled 15.9 21 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 88 c1tygG_ not modelled 15.9 32 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 89 d1tygb_ not modelled 15.5 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 90 c2oqcB_ not modelled 15.1 12 PDB header:hydrolase Chain: B: PDB Molecule:penicillin v acylase; PDBTitle: crystal structure of penicillin v acylase from bacillus subtilis 91 d1hr0w_ not modelled 14.7 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 92 d1y9qa2 not modelled 14.7 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 93 c2pjhB_ not modelled 14.2 18 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 94 c3cwiA_ not modelled 14.1 25 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 95 c3i4oA_ not modelled 13.9 19 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 96 c2gu9B_ not modelled 13.8 10 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 97 c2yk5A_ not modelled 13.6 15 PDB header:transferase Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-2,3- PDBTitle: structure of neisseria los-specific sialyltransferase (nst),2 in complex with cmp. 98 d1t44g_ not modelled 13.4 24 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 99 d1ah9a_ not modelled 13.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0