Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	H	C	P	Q	C	Q	H	V	L	D	Q	D	N	G	H	A	R	C	R	S	C	G	E	F	I	E	M	K	A	L	C	P	D	C	H	Q	P	L	Q	V	L	K	A	C	G	A	V	D	Y	F	C	Q	H	G	H	G	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?				?			?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.
Sequence		I	S	K	K	R	V	E	F	V	L	A
Secondary structure
SS confidence
Disorder												?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jne chain A domain 1 Region: 1 - 71 Aligned: 71 Modelled: 71 Confidence: 100.0% Identity: 100% Fold: Rubredoxin-like Superfamily: YfgJ-like Family: YfgJ-like Phyre2 PDB 2jne chain A Region: 1 - 71 Aligned: 71 Modelled: 71 Confidence: 100.0% Identity: 100% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. Phyre2 PDB 2jrp chain A Region: 1 - 71 Aligned: 71 Modelled: 71 Confidence: 100.0% Identity: 63% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 Phyre2 PDB 2eci chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 73.7% Identity: 33% PDB header:metal binding protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein Phyre2 PDB 2djb chain A Region: 2 - 45 Aligned: 44 Modelled: 44 Confidence: 72.6% Identity: 23% PDB header:gene regulation Chain: A: PDB Molecule:polycomb group ring finger protein 6; PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6 Phyre2 PDB 2ecw chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 71.4% Identity: 35% PDB header:apoptosis Chain: A: PDB Molecule:tripartite motif-containing protein 30; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain tripartite motif protein 30 Phyre2 PDB 1dgs chain A domain 1 Region: 1 - 22 Aligned: 22 Modelled: 22 Confidence: 70.4% Identity: 32% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: NAD+-dependent DNA ligase, domain 3 Phyre2 PDB 2f42 chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 69.6% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein Phyre2 PDB 2jny chain A domain 1 Region: 3 - 28 Aligned: 26 Modelled: 26 Confidence: 69.6% Identity: 15% Fold: Trm112p-like Superfamily: Trm112p-like Family: Trm112p-like Phyre2 PDB 2jr6 chain A Region: 3 - 28 Aligned: 26 Modelled: 26 Confidence: 69.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 Phyre2 PDB 2pk7 chain A domain 1 Region: 3 - 28 Aligned: 26 Modelled: 26 Confidence: 67.4% Identity: 23% Fold: Trm112p-like Superfamily: Trm112p-like Family: Trm112p-like Phyre2 PDB 2js4 chain A Region: 3 - 28 Aligned: 26 Modelled: 26 Confidence: 66.1% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 Phyre2 PDB 1rmd chain A domain 2 Region: 3 - 41 Aligned: 39 Modelled: 39 Confidence: 64.4% Identity: 33% Fold: RING/U-box Superfamily: RING/U-box Family: RING finger domain, C3HC4 Phyre2 PDB 1t1h chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 62.7% Identity: 20% Fold: RING/U-box Superfamily: RING/U-box Family: U-box Phyre2 PDB 2hf1 chain A domain 1 Region: 3 - 28 Aligned: 26 Modelled: 26 Confidence: 61.3% Identity: 27% Fold: Trm112p-like Superfamily: Trm112p-like Family: Trm112p-like Phyre2 PDB 2xeu chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 60.6% Identity: 25% PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain Phyre2 PDB 2ecv chain A Region: 2 - 41 Aligned: 40 Modelled: 40 Confidence: 58.2% Identity: 38% PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5 Phyre2 PDB 3a44 chain D Region: 11 - 39 Aligned: 29 Modelled: 29 Confidence: 57.0% Identity: 31% PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form Phyre2 PDB 2bay chain A domain 1 Region: 3 - 41 Aligned: 39 Modelled: 39 Confidence: 56.2% Identity: 15% Fold: RING/U-box Superfamily: RING/U-box Family: U-box Phyre2 PDB 1p91 chain A Region: 3 - 24 Aligned: 22 Modelled: 22 Confidence: 55.6% Identity: 23% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: rRNA methyltransferase RlmA Phyre2 1 d2jnea1 2 c2jneA_ 3 c2jrpA_ 4 c2eciA_ 5 c2djbA_ 6 c2ecwA_ 7 d1dgsa1 8 c2f42A_ 9 d2jnya1 10 c2jr6A_ 11 d2pk7a1 12 c2js4A_ 13 d1rmda2 14 d1t1ha_ 15 d2hf1a1 16 c2xeuA_ 17 c2ecvA_ 18 c3a44D_ 19 d2baya1 20 d1p91a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2jnea1 100.0 100 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 2 c2jneA_ 100.0 100 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 3 c2jrpA_ 100.0 63 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 4 c2eciA_ 73.7 33 PDB header:metal binding protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein 5 c2djbA_ 72.6 23 PDB header:gene regulation Chain: A: PDB Molecule:polycomb group ring finger protein 6; PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6 6 c2ecwA_ 71.4 35 PDB header:apoptosis Chain: A: PDB Molecule:tripartite motif-containing protein 30; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain tripartite motif protein 30 7 d1dgsa1 70.4 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 8 c2f42A_ 69.6 18 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 9 d2jnya1 69.6 15 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 10 c2jr6A_ 69.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 11 d2pk7a1 67.4 23 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 12 c2js4A_ 66.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 13 d1rmda2 64.4 33 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 14 d1t1ha_ 62.7 20 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 15 d2hf1a1 61.3 27 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 16 c2xeuA_ 60.6 25 PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain 17 c2ecvA_ 58.2 38 PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5 18 c3a44D_ 57.0 31 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 19 d2baya1 56.2 15 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 20 d1p91a_ 55.6 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 21 c3fl2A_ not modelled 55.2 24 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1 22 c2y43B_ not modelled 54.8 28 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18; PDBTitle: rad18 ubiquitin ligase ring domain structure 23 d2dkta1 not modelled 54.8 27 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 24 c2cklA_ not modelled 54.6 23 PDB header:transcription Chain: A: PDB Molecule:polycomb group ring finger protein 4; PDBTitle: ring1b-bmi1 e3 catalytic domain structure 25 c3ztgA_ not modelled 52.5 30 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rbbp6; PDBTitle: solution structure of the ring finger-like domain of2 retinoblastoma binding protein-6 (rbbp6) 26 c2kreA_ not modelled 52.4 20 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain 27 c2h0dB_ not modelled 52.3 33 PDB header:metal binding protein/ligase Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex 28 c3lrqB_ not modelled 52.0 31 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37; PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d. 29 d1jm7a_ not modelled 51.0 25 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 30 c2ecyA_ not modelled 50.6 28 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor-associated factor 3; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3 31 c2kpiA_ not modelled 50.6 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 32 d2c2la2 not modelled 50.2 18 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 33 c1z6uA_ not modelled 46.8 28 PDB header:ligase Chain: A: PDB Molecule:np95-like ring finger protein isoform b; PDBTitle: np95-like ring finger protein isoform b [homo sapiens] 34 d1g25a_ not modelled 46.4 33 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 35 c2yurA_ not modelled 45.3 30 PDB header:protein binding Chain: A: PDB Molecule:retinoblastoma-binding protein 6; PDBTitle: solution structure of the ring finger of human2 retinoblastoma-binding protein 6 36 c2csyA_ not modelled 44.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:zinc finger protein 183-like 1; PDBTitle: solution structure of the ring domain of the zinc finger2 protein 183-like 1 37 d2ct7a1 not modelled 44.5 24 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 38 d1jm7b_ not modelled 43.4 28 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 39 d2c2vv1 not modelled 43.1 18 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 40 c3htkC_ not modelled 42.7 27 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 41 c2owoA_ not modelled 42.3 34 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 42 c2lcqA_ not modelled 40.7 30 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 43 d1bora_ not modelled 40.3 34 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 44 d1l1ta3 not modelled 39.6 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 45 c3tsuA_ not modelled 39.0 29 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 46 d1tdza3 not modelled 38.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 47 d1r2za3 not modelled 38.7 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 48 d1lv3a_ not modelled 38.4 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 49 d1ee8a3 not modelled 38.3 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 50 c2ct2A_ not modelled 37.7 36 PDB header:ligase Chain: A: PDB Molecule:tripartite motif protein 32; PDBTitle: solution structure of the ring domain of the tripartite2 motif protein 32 51 c3l11A_ not modelled 37.7 33 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf168; PDBTitle: crystal structure of the ring domain of rnf168 52 c1v9pB_ not modelled 37.7 33 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 53 c2ep4A_ not modelled 37.4 30 PDB header:protein binding Chain: A: PDB Molecule:ring finger protein 24; PDBTitle: solution structure of ring finger from human ring finger2 protein 24 54 d1k82a3 not modelled 37.3 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 55 c2z2sD_ not modelled 36.4 30 PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr 56 d1e4ua_ not modelled 36.0 40 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 57 d1wd2a_ not modelled 35.8 32 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 58 c1dgsB_ not modelled 35.5 32 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 59 c2egpA_ not modelled 34.8 38 PDB header:antiviral protein Chain: A: PDB Molecule:tripartite motif-containing protein 34; PDBTitle: solution structure of the ring-finger domain from human2 tripartite motif protein 34 60 c3pihA_ not modelled 34.5 46 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 61 d1wfka_ not modelled 34.2 25 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 62 c3kp9A_ not modelled 33.8 26 PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase 63 d1dl6a_ not modelled 33.5 30 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 64 c2cklB_ not modelled 32.7 33 PDB header:transcription Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: ring1b-bmi1 e3 catalytic domain structure 65 c2xb1A_ not modelled 32.7 14 PDB header:transcription Chain: A: PDB Molecule:pygopus homolog 2, b-cell cll/lymphoma 9-like protein; PDBTitle: crystal structure of the human pygo2 phd finger in complex with the2 b9l hd1 domain 66 c3hugJ_ not modelled 31.9 32 PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 67 c2kdxA_ not modelled 31.3 17 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 68 c2opfA_ not modelled 31.2 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 69 c1zr9A_ not modelled 30.7 30 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 593; PDBTitle: solution structure of a human c2h2-type zinc finger protein 70 d1zr9a1 not modelled 30.7 30 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 71 c2jmdA_ not modelled 30.3 33 PDB header:ligase Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of human traf6 72 d1k3xa3 not modelled 30.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 73 c3k7aM_ not modelled 29.8 32 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 74 c2f5qA_ not modelled 29.7 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 75 d1wgma_ not modelled 29.3 18 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 76 c2riqA_ not modelled 28.7 24 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 77 c1rmdA_ not modelled 27.8 30 PDB header:dna-binding protein Chain: A: PDB Molecule:rag1; PDBTitle: rag1 dimerization domain 78 c3bvoA_ not modelled 27.0 12 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 79 c2jvnA_ not modelled 26.9 22 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 80 c2gb5B_ not modelled 26.3 23 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 81 c3cngC_ not modelled 25.2 23 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 82 c2ectA_ not modelled 24.8 25 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 126; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of ring finger protein 126 83 c2ecmA_ not modelled 24.5 28 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution structure of the ring domain of the ring finger2 and chy zinc finger domain-containing protein 1 from mus3 musculus 84 c1loiA_ not modelled 23.6 50 PDB header:hydrolase Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1; PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures 85 d1x4ka1 not modelled 23.5 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 86 c2vpdA_ not modelled 23.3 17 PDB header:gene regulation Chain: A: PDB Molecule:pygopus homolog 1; PDBTitle: decoding of methylated histone h3 tail by the pygo-bcl9 wnt2 signaling complex 87 c2k5rA_ not modelled 22.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein xf2673; PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39 88 c1k82D_ not modelled 21.5 21 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 89 c3knvA_ not modelled 21.0 30 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of the ring and first zinc finger domains2 of traf2 90 c2l0bA_ not modelled 20.8 25 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1; PDBTitle: solution nmr structure of zinc finger domain of e3 ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr4710b 91 d2cu8a1 not modelled 20.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 92 c2d8tA_ not modelled 20.3 20 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 146; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146 93 d1jnia_ not modelled 20.0 57 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 94 c1jniA_ not modelled 20.0 57 PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. 95 d3d85d1 not modelled 18.5 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 96 d1pfta_ not modelled 18.5 30 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 97 c1ee8A_ not modelled 18.5 27 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 98 c2yslA_ not modelled 17.8 35 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif-containing protein 31; PDBTitle: solution structure of the ring domain (1-66) from2 tripartite motif-containing protein 31 99 c1nnjA_ not modelled 17.4 29 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0