Email l.a.kelley@imperial.ac.uk Description P0C0S1 Date Thu Jan 5 11:29:58 GMT 2012 Unique Job ID 2f72b857d010d966

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 100 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a2 99.8 100 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 3 d2vv5a1 99.7 100 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 4 d2vv5a3 99.0 99 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 d1nz9a_ 80.4 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 6 c2e6zA_ 78.1 25 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 7 d1nppa2 76.5 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 8 c2kvqG_ 75.9 22 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 9 c2jvvA_ 75.9 22 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 d2do3a1 74.2 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 11 c2zkrt_ 73.9 24 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 d2hqha1 70.6 43 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 13 c2vfyA_ 60.6 16 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 14 c3p8bB_ 58.1 19 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d1whma_ 51.2 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 16 d1vqoq1 49.4 34 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 17 c3mlcC_ 48.7 15 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 18 d2cqaa1 48.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 19 d1t9ha1 46.8 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 c4a1cS_ 45.7 33 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 21 d2p13a1 not modelled 45.7 32 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 22 d1vqot1 not modelled 45.2 38 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 23 d2cp6a1 not modelled 45.0 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 24 c2dxcG_ not modelled 44.2 36 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 25 d2e3ia1 not modelled 42.5 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 26 d1u0la1 not modelled 42.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 27 c1m1gB_ not modelled 40.5 33 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 28 c3iz5Y_ not modelled 39.6 33 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 29 d2coya1 not modelled 38.5 48 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 30 d1whka_ not modelled 38.5 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 31 d2plsa1 not modelled 38.4 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 32 d1whja_ not modelled 37.3 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 33 d2coza1 not modelled 36.5 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 34 c3qz9D_ not modelled 35.1 40 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 35 c2e4hA_ not modelled 33.6 36 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 36 d1v6ga2 not modelled 33.2 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 37 d2o1ra1 not modelled 32.5 23 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 38 c1t9hA_ not modelled 32.4 17 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 39 d2cp5a1 not modelled 32.2 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 40 d2cp0a1 not modelled 32.0 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 41 d1v29b_ not modelled 31.0 25 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 42 c3dedB_ not modelled 30.4 19 PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum 43 d2e3ha1 not modelled 30.2 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 44 c2z0wA_ not modelled 29.9 35 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 45 d3deda1 not modelled 29.3 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 46 c2zkrq_ not modelled 28.9 28 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 47 d2cp2a1 not modelled 28.6 35 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 48 c2yv5A_ not modelled 28.3 19 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 49 d1h6za2 not modelled 27.4 32 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 50 d2cowa1 not modelled 27.3 36 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 51 d1khia1 not modelled 25.8 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 52 d2nqwa1 not modelled 25.5 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 53 d1whha_ not modelled 25.3 22 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 d1ugpb_ not modelled 24.9 35 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 55 c3iz5U_ not modelled 24.5 31 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 d1e32a3 not modelled 24.3 24 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 57 c4a1aP_ not modelled 23.6 38 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 58 c2k4kA_ not modelled 23.2 15 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 59 c1u0lB_ not modelled 22.8 17 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 60 c2xhcA_ not modelled 22.7 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 61 d2cp3a1 not modelled 22.0 38 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 62 d1kbla2 not modelled 21.6 29 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 63 c3izcU_ not modelled 21.3 28 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 64 c3cnrA_ not modelled 21.1 21 PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri 65 d1bkba1 not modelled 20.1 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 66 d2qdyb1 not modelled 18.9 32 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 67 d1iz6a1 not modelled 18.7 9 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 68 d1vbga2 not modelled 18.6 33 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 69 d2eifa1 not modelled 18.6 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 70 d1x6oa1 not modelled 18.2 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 71 d2o3ga1 not modelled 18.2 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 72 c2rcnA_ not modelled 17.5 24 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 73 c2k52A_ not modelled 17.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 74 d1i9ga_ not modelled 17.0 50 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 75 c3ftjA_ not modelled 16.5 16 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 76 d1ppje2 not modelled 16.5 16 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 77 c1s1iQ_ not modelled 15.6 32 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 78 c3llbA_ not modelled 15.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1 79 c3cmqA_ not modelled 15.0 8 PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase, mitochondrial; PDBTitle: crystal structure of human mitochondrial phenylalanine trna2 synthetase 80 c1s1iU_ not modelled 14.5 35 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 81 c2qj8B_ not modelled 14.5 16 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 82 c1q46A_ not modelled 14.4 9 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 83 d2plia1 not modelled 14.4 26 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 84 d2b25a1 not modelled 13.7 35 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 85 d2zjrr1 not modelled 13.5 40 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 86 c2hj1A_ not modelled 13.3 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 87 d2hj1a1 not modelled 13.3 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 88 d2oaia1 not modelled 13.2 26 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 89 d1jera_ not modelled 13.1 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 90 c1jerA_ not modelled 13.1 23 PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0 91 d1yvca1 not modelled 12.6 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 92 c2khjA_ not modelled 12.6 16 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 93 c3cpfB_ not modelled 12.4 18 PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a 94 c1xtdA_ not modelled 12.4 24 PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a 95 c1t0jA_ not modelled 12.1 14 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 96 d2f9ha1 not modelled 12.1 17 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 97 d2cbpa_ not modelled 12.0 33 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 98 d1yeza1 not modelled 12.0 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 99 c1khiA_ not modelled 11.8 24 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1