Email l.a.kelley@imperial.ac.uk Description P33345 Date Thu Jan 5 11:51:46 GMT 2012 Unique Job ID 2eb665d713b814dd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ra8A_ 99.8 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein q64v53_bacfr; PDBTitle: crystal structure of the q64v53_bacfr protein from bacteroides2 fragilis. northeast structural genomics consortium target bfr43 2 c2eocA_ 98.2 37 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 3; PDBTitle: solution structure of the wgr domain from human poly [adp-2 ribose] polymerase-3 3 d2cr9a1 97.5 28 Fold:WGR domain-like Superfamily:WGR domain-like Family:WGR domain 4 c3u5gB_ 41.6 13 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s1-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 5 c1y9qA_ 38.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 6 c2xzm4_ 37.1 13 PDB header:ribosome Chain: 4: PDB Molecule:40s ribosomal protein s3a; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 7 c2bnoA_ 34.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 8 c1yzxB_ 33.7 14 PDB header:transferase Chain: B: PDB Molecule:glutathione s-transferase kappa 1; PDBTitle: crystal structure of human kappa class glutathione2 transferase 9 d1jjcb1 30.5 16 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 10 d2awna1 29.8 15 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 11 d1te4a_ 28.7 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:PBS lyase HEAT-like repeat 12 d2hf3a1 28.6 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 13 c3ooxA_ 24.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 14 c3f6wE_ 23.2 23 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 15 c2o38A_ 22.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 16 d2o38a1 22.7 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 17 c3op9A_ 21.0 15 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 18 c3gknA_ 20.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures 19 d1xvla1 19.8 20 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 20 d2a6ca1 18.5 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 21 d1vb5a_ not modelled 18.1 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 22 c3qb0C_ not modelled 17.2 16 PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp 23 d2phcb1 not modelled 17.2 22 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 24 c3clcC_ not modelled 16.7 19 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 25 d1iwga6 not modelled 16.2 17 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 26 d1r69a_ not modelled 16.2 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 27 d2nrac1 not modelled 16.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Replication initiation protein 28 c3k1qB_ not modelled 15.8 15 PDB header:virus Chain: B: PDB Molecule:vp3a, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 29 c3hpbA_ not modelled 15.7 22 PDB header:protein transport Chain: A: PDB Molecule:snx5 protein; PDBTitle: crystal structure of snx5-px domain in p212121 space group 30 c1o1aP_ not modelled 15.7 20 PDB header:contractile protein Chain: P: PDB Molecule:skeletal muscle myosin ii; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle 31 d1yt3a2 not modelled 15.6 20 Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains 32 d1z67a1 not modelled 15.5 9 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 33 d1c0fa1 not modelled 14.8 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 34 c2cseW_ not modelled 14.8 24 PDB header:virus Chain: W: PDB Molecule:major core protein lambda 1; PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution 35 d1vbka2 not modelled 14.7 29 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 36 d2cyya1 not modelled 14.4 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 37 d2cg4a1 not modelled 14.2 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 38 d1ep5a_ not modelled 13.8 15 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 39 d1y9qa1 not modelled 13.2 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain 40 c3f52A_ not modelled 13.1 19 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 41 c2zp2B_ not modelled 13.0 22 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 42 c3mfqB_ not modelled 12.9 9 PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center 43 d2croa_ not modelled 12.5 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 44 c3k1qC_ not modelled 12.5 15 PDB header:virus Chain: C: PDB Molecule:vp3b, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 45 d2cfxa1 not modelled 12.4 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 46 c2dbbA_ not modelled 11.8 21 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 47 c3kblA_ not modelled 11.8 17 PDB header:protein binding Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1; PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution 48 c6rlxC_ not modelled 11.8 56 PDB header:hormone(muscle relaxant) Chain: C: PDB Molecule:relaxin, a-chain; PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants 49 c6rlxA_ not modelled 11.8 56 PDB header:hormone(muscle relaxant) Chain: A: PDB Molecule:relaxin, a-chain; PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants 50 d1yaga1 not modelled 11.6 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 51 c1vbkA_ not modelled 11.5 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 52 d2fxua1 not modelled 11.5 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 53 d1itwa_ not modelled 11.4 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Monomeric isocitrate dehydrogenase 54 d1sq8a_ not modelled 11.3 27 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 55 d1i1ga1 not modelled 11.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 56 c3bjxB_ not modelled 11.1 30 PDB header:hydrolase Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi; PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3 57 c2b0tA_ not modelled 11.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp isocitrate dehydrogenase; PDBTitle: structure of monomeric nadp isocitrate dehydrogenase 58 c4proD_ not modelled 10.9 11 PDB header:serine protease Chain: D: PDB Molecule:alpha-lytic protease; PDBTitle: alpha-lytic protease complexed with pro region 59 c2xskA_ not modelled 10.9 55 PDB header:chaperone Chain: A: PDB Molecule:csgc; PDBTitle: e. coli curli protein csgc - secys 60 c2cfxD_ not modelled 10.8 15 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc 61 c3pppA_ not modelled 10.8 16 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc 62 d1pc6a_ not modelled 10.8 10 Fold:NinB Superfamily:NinB Family:NinB 63 c3ltjA_ not modelled 10.6 15 PDB header:protein binding Chain: A: PDB Molecule:alpharep-4; PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats 64 c2rajA_ not modelled 10.1 21 PDB header:structural protein Chain: A: PDB Molecule:sorting nexin-9; PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9 65 d1llib_ not modelled 10.1 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 66 c2phcB_ not modelled 10.0 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 67 c1pbyA_ not modelled 9.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 68 c3eusB_ not modelled 9.9 23 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi 69 c2l4aA_ not modelled 9.8 14 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 70 c1i1gA_ not modelled 9.5 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 71 c2kpjA_ not modelled 9.5 13 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 72 d2fbea1 not modelled 9.3 13 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain 73 d2ofya1 not modelled 9.3 3 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 74 c3lisB_ not modelled 9.2 9 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 75 c3bs3A_ not modelled 9.1 15 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 76 c3b7hA_ not modelled 9.0 17 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 77 c2e1cA_ not modelled 9.0 24 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 78 c2lbaA_ not modelled 8.9 28 PDB header:lipid binding protein Chain: A: PDB Molecule:babp protein; PDBTitle: solution structure of chicken ileal babp in complex with2 glycochenodeoxycholic acid 79 c2rliA_ not modelled 8.9 7 PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 80 c1ocuA_ not modelled 8.9 18 PDB header:sorting protein Chain: A: PDB Molecule:sorting nexin; PDBTitle: crystal structure of the yeast px-domain protein grd19p2 (sorting nexin 3) complexed to3 phosphatidylinosytol-3-phospahte. 81 c1jmxA_ not modelled 8.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 82 d1sbqa_ not modelled 8.8 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 83 c3d3kD_ not modelled 8.7 23 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 84 c3o66A_ not modelled 8.7 24 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter 85 d1rioa_ not modelled 8.7 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 86 d1soua_ not modelled 8.6 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 87 c3bdnB_ not modelled 8.6 15 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 88 c3d3jA_ not modelled 8.6 21 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 89 c2ewtA_ not modelled 8.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd 90 c1f8vE_ not modelled 8.4 40 PDB header:virus/rna Chain: E: PDB Molecule:mature capsid protein gamma; PDBTitle: the structure of pariacoto virus reveals a dodecahedral2 cage of duplex rna 91 d2hy5a1 not modelled 8.4 22 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 92 d1f1sa2 not modelled 8.3 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 93 c1wwuA_ not modelled 8.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21935; PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935 94 d1y7ya1 not modelled 8.3 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 95 c3r0eC_ not modelled 8.3 18 PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 96 d3clsd2 not modelled 8.2 26 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 97 d1k8ka1 not modelled 8.2 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 98 d1ixsa_ not modelled 8.1 26 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 99 c2p6tH_ not modelled 8.0 24 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis