Email l.a.kelley@imperial.ac.uk Description P0A8E7 Date Thu Jan 5 11:07:39 GMT 2012 Unique Job ID 2d7fc682d2dc59c1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1in0B_ 100.0 62 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yajq protein; PDBTitle: yajq protein (hi1034) 2 d1in0a1 100.0 58 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 3 d1in0a2 100.0 66 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 4 d1wiha_ 75.1 18 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 5 d1eh1a_ 61.0 29 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 6 c2jpiA_ 60.9 9 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa 7 d1ek8a_ 56.5 26 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 8 c3aqoD_ 54.2 21 PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export 9 d1is1a_ 53.9 29 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 10 d1dd5a_ 46.6 26 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 11 d1vqoe2 39.1 20 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 12 d1pvga2 34.5 32 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:DNA gyrase/MutL, N-terminal domain 13 d1ge9a_ 28.3 33 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 14 c3ci9B_ 25.7 15 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 15 d1jjcb4 24.3 16 Fold:Ferredoxin-like Superfamily:Anticodon-binding domain of PheRS Family:Anticodon-binding domain of PheRS 16 c2kyzA_ 22.5 16 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 17 d1j2jb_ 19.9 18 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 18 d1vpka2 19.8 12 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 19 d1wxma1 18.7 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 20 d1jz8a2 18.0 42 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 21 d1wqga1 not modelled 17.7 19 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 22 c1bo1A_ not modelled 16.6 17 PDB header:transferase Chain: A: PDB Molecule:protein (phosphatidylinositol phosphate kinase PDBTitle: phosphatidylinositol phosphate kinase type ii beta 23 d1bo1a_ not modelled 16.6 17 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta 24 d1yq2a1 not modelled 16.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 25 d1e32a1 not modelled 16.3 42 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 26 d1x7fa2 not modelled 15.7 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Outer surface protein, N-terminal domain 27 c3ijmA_ not modelled 14.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized restriction endonuclease-like fold PDBTitle: the structure of a restriction endonuclease-like fold superfamily2 protein from spirosoma linguale. 28 d1hywa_ not modelled 14.3 24 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 29 d1qnaa1 not modelled 14.1 13 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 30 c2ftcF_ not modelled 13.9 20 PDB header:ribosome Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 31 c3fblA_ not modelled 13.8 38 PDB header:structural protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1) 32 c2gk9D_ not modelled 13.2 18 PDB header:transferase Chain: D: PDB Molecule:phosphatidylinositol-4-phosphate 5-kinase, type PDBTitle: human phosphatidylinositol-4-phosphate 5-kinase, type ii,2 gamma 33 d1ok7a2 not modelled 11.8 4 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 34 c1x7fA_ not modelled 11.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:outer surface protein; PDBTitle: crystal structure of an uncharacterized b. cereus protein 35 d1vjea_ not modelled 11.0 30 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 36 d1nh2a1 not modelled 10.9 13 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 37 c1qzrA_ not modelled 9.8 32 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) 38 c1giyJ_ not modelled 9.6 19 PDB header:ribosome Chain: J: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix 39 d1dd3a2 not modelled 9.6 19 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 40 c2gya3_ not modelled 9.4 20 PDB header:ribosome Chain: 3: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 41 d1cdwa1 not modelled 9.2 14 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 42 d1ctfa_ not modelled 9.1 19 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 43 c2e70A_ not modelled 8.6 29 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 44 c1xyr6_ not modelled 8.6 36 PDB header:virus Chain: 6: PDB Molecule:genome polyprotein, coat protein vp3; PDB Fragment:residues 620-630 PDBTitle: poliovirus 135s cell entry intermediate 45 c1vpkA_ not modelled 8.4 17 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of dna polymerase iii, beta subunit (tm0262) from2 thermotoga maritima at 2.00 a resolution 46 d1vpra1 not modelled 8.3 28 Fold:Lipocalins Superfamily:Lipocalins Family:Dinoflagellate luciferase repeat 47 c3k1tA_ not modelled 8.1 11 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase gsha; PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution 48 c2h2mA_ not modelled 7.8 31 PDB header:metal transport Chain: A: PDB Molecule:comm domain-containing protein 1; PDBTitle: solution structure of the n-terminal domain of commd12 (murr1) 49 c1zxnB_ not modelled 7.7 26 PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp 50 c3ke2A_ not modelled 7.7 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 51 d1xmta_ not modelled 7.6 8 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 52 c1mv4B_ not modelled 7.5 67 PDB header:de novo protein Chain: B: PDB Molecule:tropomyosin 1 alpha chain; PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin 53 c2zjq5_ not modelled 7.3 20 PDB header:ribosome Chain: 5: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: interaction of l7 with l11 induced by microccocin binding2 to the deinococcus radiodurans 50s subunit 54 d2zjq51 not modelled 7.3 20 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 55 d1rfza_ not modelled 7.3 29 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 56 c4a19Q_ not modelled 7.2 14 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l36; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 57 c2egcA_ not modelled 7.1 8 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the fifth sh3 domain from human2 kiaa0418 protein 58 c2joiA_ not modelled 6.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0095; PDBTitle: nmr solution structure of hypothetical protein ta0095 from2 thermoplasma acidophilum 59 c3izck_ not modelled 6.7 13 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 60 d2a1jb1 not modelled 6.6 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 61 c3okqA_ not modelled 6.3 50 PDB header:protein binding Chain: A: PDB Molecule:bud site selection protein 6; PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6 62 d1cz5a1 not modelled 6.2 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 63 d1c52a_ not modelled 6.2 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 64 c3kowH_ not modelled 5.8 36 PDB header:metal binding protein Chain: H: PDB Molecule:d-ornithine aminomutase s component; PDBTitle: crystal structure of ornithine 4,5 aminomutase backsoaked complex 65 d1cc8a_ not modelled 5.7 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 66 c3fryB_ not modelled 5.6 10 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 67 c3ossD_ not modelled 5.5 13 PDB header:protein transport Chain: D: PDB Molecule:type 2 secretion system, secretin gspd; PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system 68 d1fyja_ not modelled 5.5 27 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 69 d1uaea_ not modelled 5.4 28 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 70 c2d3o1_ not modelled 5.3 15 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 71 d2dlxa1 not modelled 5.2 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:UAS domain