Email l.a.kelley@imperial.ac.uk Description P77689 Date Thu Jan 5 12:31:40 GMT 2012 Unique Job ID 2c2395a4e5249a8b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vh4a_ 100.0 100 Fold:Single-stranded right-handed beta-helix Superfamily:Stabilizer of iron transporter SufD Family:Stabilizer of iron transporter SufD 2 c2dagA_ 74.2 17 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 3 d1whca_ 67.3 10 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 4 c1dd9A_ 63.0 17 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 5 d1dd9a_ 63.0 17 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 6 c2daiA_ 62.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 7 c3sf5D_ 58.4 13 PDB header:chaperone Chain: D: PDB Molecule:urease accessory protein ureh; PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex 8 d1veka_ 54.2 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c2crnA_ 54.0 10 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 10 d1p32a_ 53.8 26 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 11 d1nuia1 52.5 33 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 12 d2csba4 50.8 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 13 d1rfza_ 48.3 17 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 14 d1yqfa1 47.7 35 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 15 c3qv0A_ 44.4 39 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 16 c3jv1A_ 41.8 30 PDB header:hydrolase Chain: A: PDB Molecule:p22 protein; PDBTitle: crystal structure of the trypanosoma brucei p22 protein 17 c1q57G_ 41.5 36 PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 18 d1wiva_ 39.7 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 19 c3ic3C_ 39.1 33 PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 20 d2crna1 38.6 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 21 c2qh9B_ not modelled 37.2 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 22 c3fp5A_ not modelled 36.4 17 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa 23 c2f46A_ not modelled 36.2 17 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution 24 d2cpwa1 not modelled 34.1 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 25 c2cpwA_ not modelled 33.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 26 d1n9pa_ not modelled 33.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 27 d1yqga1 not modelled 31.3 24 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 28 c2au3A_ not modelled 29.1 35 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 29 c2o2kA_ not modelled 28.9 22 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 30 c2zc1A_ not modelled 28.8 33 PDB header:hydrolase Chain: A: PDB Molecule:phosphotriesterase; PDBTitle: organophosphorus hydrolase from deinococcus radiodurans 31 c2dakA_ not modelled 28.3 10 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 32 d2e1za2 not modelled 27.3 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 33 c2wknE_ not modelled 26.8 25 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 34 d1g99a2 not modelled 26.3 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 35 d1mska_ not modelled 24.8 22 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain 36 d2ahra1 not modelled 20.6 10 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 37 c1nuiA_ not modelled 20.5 33 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 38 d2ddha2 not modelled 20.2 13 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 39 d1vega_ not modelled 20.0 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 40 d1ivza_ not modelled 19.9 25 Fold:Ferredoxin-like Superfamily:SEA domain Family:SEA domain 41 c1tuuA_ not modelled 18.5 19 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 42 c3e3vA_ not modelled 18.4 13 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 43 c3my3A_ not modelled 18.4 12 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 44 c2d9sA_ not modelled 18.2 33 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 45 c3khyA_ not modelled 18.0 19 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 46 d1ifya_ not modelled 16.7 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 47 c1sazA_ not modelled 16.6 19 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 48 c3zq4C_ not modelled 16.2 22 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 49 d1wfda_ not modelled 16.0 7 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 50 c1x3nA_ not modelled 15.8 15 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 51 d2gcla1 not modelled 15.3 42 Fold:PH domain-like barrel Superfamily:PH domain-like Family:SSRP1-like 52 c3qyeA_ not modelled 15.2 17 PDB header:hydrolase activator Chain: A: PDB Molecule:tbc1 domain family member 1; PDBTitle: crystal structure of human tbc1d1 rabgap domain 53 d1saza2 not modelled 15.0 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 54 d2g3qa1 not modelled 14.5 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 55 d1kx5d_ not modelled 14.4 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 56 d1v3aa_ not modelled 14.0 34 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 57 c2e4fA_ not modelled 13.8 18 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 58 c3rhgA_ not modelled 13.5 25 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 59 d1oqya1 not modelled 13.4 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 60 c3ff5B_ not modelled 13.3 8 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 61 c1tlqA_ not modelled 12.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 62 d1tlqa_ not modelled 12.6 17 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 63 c2iirJ_ not modelled 12.6 22 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 64 d2gu3a1 not modelled 12.5 36 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:PepSY-like 65 c3gypA_ not modelled 12.4 25 PDB header:chaperone Chain: A: PDB Molecule:histone chaperone rtt106; PDBTitle: rtt106p 66 c2gu3A_ not modelled 12.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ypmb protein; PDBTitle: ypmb protein from bacillus subtilis 67 c2do6A_ not modelled 12.2 19 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 68 c3gztF_ not modelled 11.9 23 PDB header:virus Chain: F: PDB Molecule:outer capsid glycoprotein vp7; PDBTitle: vp7 recoated rotavirus dlp 69 c2kerA_ not modelled 11.9 43 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685; PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus 70 d1eqzb_ not modelled 11.8 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 71 d1ok0a_ not modelled 11.8 29 Fold:alpha-Amylase inhibitor tendamistat Superfamily:alpha-Amylase inhibitor tendamistat Family:alpha-Amylase inhibitor tendamistat 72 c3p4iA_ not modelled 11.8 30 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 73 d1wjia_ not modelled 11.5 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 74 d1s32d_ not modelled 11.2 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 75 c3mhvC_ not modelled 11.0 12 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 76 c2w85A_ not modelled 10.6 8 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 77 c3m66A_ not modelled 10.6 17 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 78 c1jrjA_ not modelled 10.4 17 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 79 c3hy5A_ not modelled 10.4 23 PDB header:transport protein Chain: A: PDB Molecule:retinaldehyde-binding protein 1; PDBTitle: crystal structure of cralbp 80 d1oiza1 not modelled 10.1 19 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 81 d1y9ia_ not modelled 9.7 15 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 82 c3dfgA_ not modelled 9.5 19 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 83 c3f4cA_ not modelled 9.4 30 PDB header:hydrolase Chain: A: PDB Molecule:organophosphorus hydrolase; PDBTitle: crystal structure of organophosphorus hydrolase from geobacillus2 stearothermophilus strain 10, with glycerol bound 84 c1ye9E_ not modelled 9.3 18 PDB header:oxidoreductase Chain: E: PDB Molecule:catalase hpii; PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli 85 d1auaa1 not modelled 9.2 27 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 86 c2akhZ_ not modelled 9.0 18 PDB header:protein transport Chain: Z: PDB Molecule:preprotein translocase sece subunit; PDBTitle: normal mode-based flexible fitted coordinates of a non-2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 87 c3d5lA_ not modelled 8.6 13 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 88 c3rj1P_ not modelled 8.6 16 PDB header:transcription Chain: P: PDB Molecule:mediator of rna polymerase ii transcription subunit 17; PDBTitle: architecture of the mediator head module 89 d1abaa_ not modelled 8.5 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 90 c3k2gA_ not modelled 8.5 13 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 91 c2hjmB_ not modelled 8.1 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 92 d1tzyb_ not modelled 8.1 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 93 d1bf6a_ not modelled 8.0 30 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Phosphotriesterase-like 94 c2jnhA_ not modelled 7.9 19 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 95 c2i7aA_ not modelled 7.8 16 PDB header:hydrolase Chain: A: PDB Molecule:calpain 13; PDBTitle: domain iv of human calpain 13 96 c3okzB_ not modelled 7.8 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein gbs0355; PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127 97 d1y02a1 not modelled 7.8 23 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 98 c2fhgC_ not modelled 7.6 14 PDB header:hydrolase Chain: C: PDB Molecule:proteasome, beta subunit; PDBTitle: crystal structure of mycobacterial tuberculosis proteasome 99 c2vc7A_ not modelled 7.6 17 PDB header:hydrolase Chain: A: PDB Molecule:aryldialkylphosphatase; PDBTitle: structural basis for natural lactonase and promiscuous2 phosphotriesterase activities