Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	L	I	T	Q	K	A	L	K	D	A	A	E	K	Y	P	Q	H	K	T	E	L	V	A	L	G	N	T	I	A	K	G	Y	F	K	K	P	E	S	L	K	A	V	F	P	S	L	D	N	F	K	Y	L	D	K	H	Y	V	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Sequence		N	V	G	G	N	E	L	R	V	V	A	M	V	F	F	E	S	Q	K	C	Y	I	R	E	V	M	T	H	K	E	Y	D	F	F	T	A	V	H	R	T	K	G	K	K
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2khe chain A Region: 3 - 90 Aligned: 81 Modelled: 88 Confidence: 88.3% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:toxin-like protein; PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8 Phyre2 PDB 2otr chain A Region: 64 - 90 Aligned: 27 Modelled: 27 Confidence: 81.7% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hp0892; PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori Phyre2 PDB 1wmi chain A domain 1 Region: 3 - 87 Aligned: 79 Modelled: 85 Confidence: 71.4% Identity: 9% Fold: RelE-like Superfamily: RelE-like Family: RelE-like Phyre2 PDB 3g5o chain C Region: 3 - 86 Aligned: 74 Modelled: 82 Confidence: 45.9% Identity: 16% PDB header:toxin/antitoxin Chain: C: PDB Molecule:uncharacterized protein rv2866; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis Phyre2 PDB 3bpq chain D Region: 3 - 90 Aligned: 79 Modelled: 88 Confidence: 44.0% Identity: 16% PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii Phyre2 PDB 1z8m chain A domain 1 Region: 64 - 90 Aligned: 25 Modelled: 27 Confidence: 40.3% Identity: 16% Fold: RelE-like Superfamily: RelE-like Family: RelE-like Phyre2 PDB 3kvt chain A Region: 55 - 69 Aligned: 15 Modelled: 0 Confidence: 39.1% Identity: 27% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 3kix chain Y Region: 16 - 87 Aligned: 72 Modelled: 72 Confidence: 32.7% Identity: 17% PDB header:ribosome Chain: Y: PDB Molecule: PDBTitle: structure of rele nuclease bound to the 70s ribosome2 (postcleavage state; part 3 of 4) Phyre2 PDB 1qdv chain A Region: 56 - 69 Aligned: 14 Modelled: 14 Confidence: 31.8% Identity: 21% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 1t1d chain A Region: 56 - 69 Aligned: 14 Modelled: 14 Confidence: 31.6% Identity: 29% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 1s1g chain A Region: 55 - 69 Aligned: 15 Modelled: 15 Confidence: 28.2% Identity: 33% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 2g39 chain A domain 2 Region: 16 - 45 Aligned: 30 Modelled: 30 Confidence: 27.4% Identity: 13% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3q1j chain A Region: 67 - 94 Aligned: 28 Modelled: 28 Confidence: 26.5% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 Phyre2 PDB 1exb chain E Region: 56 - 69 Aligned: 14 Modelled: 14 Confidence: 26.0% Identity: 21% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 2i2r chain K Region: 46 - 69 Aligned: 24 Modelled: 24 Confidence: 24.9% Identity: 21% PDB header:transport protein Chain: K: PDB Molecule:potassium voltage-gated channel subfamily d member 3; PDBTitle: crystal structure of the kchip1/kv4.3 t1 complex Phyre2 PDB 3dry chain A Region: 54 - 69 Aligned: 16 Modelled: 16 Confidence: 24.1% Identity: 31% PDB header:unknown function Chain: A: PDB Molecule:btb/poz domain-containing protein kctd5; PDBTitle: x-ray crystal structure of human kctd5 protein crystallized in low-2 salt buffer Phyre2 PDB 1dsx chain A Region: 56 - 69 Aligned: 14 Modelled: 14 Confidence: 23.9% Identity: 29% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 1a68 chain A Region: 56 - 69 Aligned: 14 Modelled: 14 Confidence: 20.1% Identity: 29% Fold: POZ domain Superfamily: POZ domain Family: Tetramerization domain of potassium channels Phyre2 PDB 1bwv chain A domain 1 Region: 7 - 26 Aligned: 20 Modelled: 20 Confidence: 17.9% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: RuBisCo, C-terminal domain Family: RuBisCo, large subunit, C-terminal domain Phyre2 PDB 1u6z chain A domain 3 Region: 55 - 72 Aligned: 18 Modelled: 18 Confidence: 17.8% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Ppx/GppA phosphatase Phyre2 1 c2kheA_ 2 c2otrA_ 3 d1wmia1 4 c3g5oC_ 5 c3bpqD_ 6 d1z8ma1 7 d3kvta_ 8 c3kixy_ 9 d1qdva_ 10 d1t1da_ 11 d1s1ga_ 12 d2g39a2 13 c3q1jA_ 14 d1exbe_ 15 c2i2rK_ 16 c3dryA_ 17 d1dsxa_ 18 d1a68a_ 19 d1bwva1 20 d1u6za3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kheA_ 88.3 10 PDB header:hydrolase Chain: A: PDB Molecule:toxin-like protein; PDBTitle: solution structure of the bacterial toxin rele from thermus2 thermophilus hb8 2 c2otrA_ 81.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hp0892; PDBTitle: solution structure of conserved hypothetical protein hp0892 from2 helicobacter pylori 3 d1wmia1 71.4 9 Fold:RelE-like Superfamily:RelE-like Family:RelE-like 4 c3g5oC_ 45.9 16 PDB header:toxin/antitoxin Chain: C: PDB Molecule:uncharacterized protein rv2866; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 5 c3bpqD_ 44.0 16 PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 6 d1z8ma1 40.3 16 Fold:RelE-like Superfamily:RelE-like Family:RelE-like 7 d3kvta_ 39.1 27 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 8 c3kixy_ 32.7 17 PDB header:ribosome Chain: Y: PDB Molecule: PDBTitle: structure of rele nuclease bound to the 70s ribosome2 (postcleavage state; part 3 of 4) 9 d1qdva_ 31.8 21 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 10 d1t1da_ 31.6 29 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 11 d1s1ga_ 28.2 33 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 12 d2g39a2 27.4 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 13 c3q1jA_ 26.5 18 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 14 d1exbe_ 26.0 21 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 15 c2i2rK_ 24.9 21 PDB header:transport protein Chain: K: PDB Molecule:potassium voltage-gated channel subfamily d member 3; PDBTitle: crystal structure of the kchip1/kv4.3 t1 complex 16 c3dryA_ 24.1 31 PDB header:unknown function Chain: A: PDB Molecule:btb/poz domain-containing protein kctd5; PDBTitle: x-ray crystal structure of human kctd5 protein crystallized in low-2 salt buffer 17 d1dsxa_ 23.9 29 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 18 d1a68a_ 20.1 29 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 19 d1bwva1 17.9 25 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 20 d1u6za3 17.8 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 21 c2r9rH_ not modelled 16.5 20 PDB header:membrane protein, transport protein Chain: H: PDB Molecule:paddle chimera voltage gated potassium channel kv1.2-kv2.1; PDBTitle: shaker family voltage dependent potassium channel (kv1.2-kv2.1 paddle2 chimera channel) in association with beta subunit 22 d1q18a1 not modelled 14.7 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 23 d1kyza2 not modelled 13.8 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Plant O-methyltransferase, C-terminal domain 24 d1t6ca2 not modelled 13.6 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 25 c2daeA_ not modelled 12.7 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa0733 protein; PDBTitle: solution structure of the n-terminal cue domain in the2 human mitogen-activated protein kinase kinase kinase 73 interacting protein 2 (map3k7ip2) 26 c2eqmA_ not modelled 12.6 15 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 27 d1u5ta1 not modelled 12.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 28 d1u6za2 not modelled 12.2 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 29 c3bnwA_ not modelled 11.9 16 PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase, putative; PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei 30 c1bwvA_ not modelled 11.9 25 PDB header:lyase Chain: A: PDB Molecule:protein (ribulose bisphosphate carboxylase); PDBTitle: activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco)2 complexed with the reaction intermediate analogue 2-carboxyarabinitol3 1,5-bisphosphate 31 c3drzE_ not modelled 11.8 36 PDB header:unknown function Chain: E: PDB Molecule:btb/poz domain-containing protein kctd5; PDBTitle: x-ray crystal structure of the n-terminal btb domain of human kctd52 protein 32 d1czan3 not modelled 11.7 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 33 d1t6ca1 not modelled 11.6 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 34 c3n5bB_ not modelled 11.2 29 PDB header:transcription regulator Chain: B: PDB Molecule:asr0485 protein; PDBTitle: the complex of pii and pipx from anabaena 35 d1sz2a1 not modelled 11.1 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 36 c2kd2A_ not modelled 11.0 46 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: nmr structure of faim-ctd 37 d1fs1b1 not modelled 10.6 36 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 38 d1wgla_ not modelled 10.5 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 39 c2yumA_ not modelled 10.5 15 PDB header:transcription Chain: A: PDB Molecule:zinc finger zz-type-containing protein 3; PDBTitle: solution structure of the myb-like dna-binding domain of2 human zzz3 protein 40 c2dhyA_ not modelled 10.2 33 PDB header:immune system Chain: A: PDB Molecule:cue domain-containing protein 1; PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1) 41 d2ajta1 not modelled 10.1 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:FucI/AraA C-terminal domain-like Family:AraA C-terminal domain-like 42 c2qgzA_ not modelled 10.1 13 PDB header:hydrolase Chain: A: PDB Molecule:putative primosome component; PDBTitle: crystal structure of a putative primosome component from2 streptococcus pyogenes serotype m3. northeast structural3 genomics target dr58 43 d8ruca1 not modelled 9.9 11 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 44 d1t95a2 not modelled 9.9 25 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain 45 d1rbla1 not modelled 9.8 21 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 46 c2xg8D_ not modelled 9.8 21 PDB header:transcription Chain: D: PDB Molecule:pipx; PDBTitle: structural basis of gene regulation by protein pii: the2 crystal complex of pii and pipx from synechococcus3 elongatus pcc 7942 47 d1czan1 not modelled 9.8 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 48 d1gk8a1 not modelled 9.6 10 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 49 d1v4sa1 not modelled 9.2 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 50 d1bdga1 not modelled 9.1 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 51 d1o57a1 not modelled 9.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 52 d1fs2b1 not modelled 8.9 36 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 53 c1u5tA_ not modelled 8.8 14 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 54 d1nn7a_ not modelled 8.6 33 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 55 c3a8uX_ not modelled 8.5 3 PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase 56 d1bg3a1 not modelled 8.4 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 57 d2cqqa1 not modelled 8.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 58 c3kj1B_ not modelled 8.1 50 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: mcl-1 in complex with bim bh3 mutant i2da 59 c2h2wA_ not modelled 7.7 38 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 60 d1nexa1 not modelled 7.6 27 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 61 c1rcxH_ not modelled 7.3 11 PDB header:lyase (carbon-carbon) Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase; PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate 62 d1bg3a3 not modelled 7.0 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 63 d1wdda1 not modelled 6.8 10 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 64 d1d1la_ not modelled 6.8 47 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 65 c3c0rC_ not modelled 6.7 14 PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin 66 c2ksnA_ not modelled 6.7 12 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 67 c2q2rA_ not modelled 6.6 38 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 68 d1gr0a2 not modelled 6.5 54 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 69 d4croa_ not modelled 6.4 47 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 70 d1iufa2 not modelled 6.4 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 71 d1dqaa1 not modelled 6.4 23 Fold:Ferredoxin-like Superfamily:NAD-binding domain of HMG-CoA reductase Family:NAD-binding domain of HMG-CoA reductase 72 c2cseW_ not modelled 6.3 11 PDB header:virus Chain: W: PDB Molecule:major core protein lambda 1; PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution 73 d2f9zc1 not modelled 6.2 38 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 74 c2pijB_ not modelled 6.2 20 PDB header:transcription Chain: B: PDB Molecule:prophage pfl 6 cro; PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5 75 c2zvkC_ not modelled 6.1 12 PDB header:transferase Chain: C: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of pcna in complex with dna polymerase eta fragment 76 c3md1B_ not modelled 6.0 23 PDB header:rna binding protein Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1) 77 d1xhja_ not modelled 6.0 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 78 d1pmea_ not modelled 6.0 20 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Protein kinases, catalytic subunit 79 d1o66a_ not modelled 6.0 10 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 80 c2jxfA_ not modelled 5.9 20 PDB header:viral protein, membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: the solution structure of hcv ns4b(40-69) 81 d2ovra1 not modelled 5.8 36 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 82 c2k4vA_ not modelled 5.8 41 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . 83 d1p9qc2 not modelled 5.7 25 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain 84 d1vjpa2 not modelled 5.7 45 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 85 c2g39A_ not modelled 5.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa 86 c3cerD_ not modelled 5.4 21 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 87 d2p0ta1 not modelled 5.2 23 Fold:PSPTO4464-like Superfamily:PSPTO4464-like Family:PSPTO4464-like 88 c2p0tA_ not modelled 5.2 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0307 protein pspto_4464; PDBTitle: structural genomics, the crystal structure of a conserved putative2 protein from pseudomonas syringae pv. tomato str. dc3000 89 d3orca_ not modelled 5.2 47 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 90 c3hi0B_ not modelled 5.1 36 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0