Secondary structure and disorder prediction

1

.

.

.

.

.

.

.

.

10

.

.

.

.

.

.

.

.

.

20

.

.

.

.

.

.

.

.

.

30

.

.

.

.

.

.

.

.

.

40

.

.

.

.

.

.

.

.

.

50

.

.

.

.

.

.

.

.

.

60

Sequence

M

K

S

H

D

L

K

K

A

L

C

Q

W

T

A

M

L

A

L

V

V

S

G

A

V

W

A

A

N

G

V

D

F

S

Q

S

P

E

V

S

G

T

Q

E

G

A

I

R

M

P

K

E

Q

D

R

M

P

L

N

Y

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

70

.

.

.

.

.

.

.

.

.

80

.

.

.

.

.

.

.

.

.

90

.

.

.

.

.

.

.

.

.

100

.

.

.

.

.

.

.

.

.

110

.

.

.

.

.

.

.

.

.

120

Sequence

V

N

Q

P

P

M

I

P

H

S

V

E

G

Y

Q

V

T

T

N

T

N

R

C

L

Q

C

H

G

V

E

S

Y

R

T

T

G

A

P

R

I

S

P

T

H

F

M

D

S

D

G

K

V

G

A

E

V

A

P

R

R

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

130

.

.

.

.

.

.

.

.

.

140

.

.

.

.

.

.

.

.

.

Sequence

Y

F

C

L

Q

C

H

V

P

Q

A

D

T

A

P

I

V

G

N

T

F

T

P

S

K

G

Y

G

K

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ogy chain B Region: 36 - 146 Aligned: 111 Modelled: 111 Confidence: 100.0% Identity: 43% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 3o5a chain B Region: 43 - 146 Aligned: 98 Modelled: 96 Confidence: 100.0% Identity: 47% PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids Phyre2 PDB 1jni chain A Region: 63 - 129 Aligned: 62 Modelled: 67 Confidence: 100.0% Identity: 73% PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. Phyre2 PDB 1jni chain A Region: 63 - 129 Aligned: 62 Modelled: 67 Confidence: 100.0% Identity: 73% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2j7a chain E Region: 83 - 128 Aligned: 45 Modelled: 46 Confidence: 95.5% Identity: 29% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 2vr0 chain A Region: 83 - 128 Aligned: 45 Modelled: 46 Confidence: 95.0% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 2rdz chain A domain 1 Region: 56 - 128 Aligned: 63 Modelled: 73 Confidence: 91.8% Identity: 21% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1qdb chain A Region: 52 - 128 Aligned: 63 Modelled: 77 Confidence: 91.2% Identity: 21% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2p0b chain A Region: 83 - 132 Aligned: 39 Modelled: 50 Confidence: 87.8% Identity: 21% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb Phyre2 PDB 1fs7 chain A Region: 83 - 128 Aligned: 46 Modelled: 46 Confidence: 79.7% Identity: 28% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs9 chain A Region: 83 - 128 Aligned: 46 Modelled: 46 Confidence: 79.7% Identity: 28% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Phyre2 PDB 1qo8 chain A Region: 62 - 127 Aligned: 49 Modelled: 66 Confidence: 75.9% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase Phyre2 PDB 1oah chain A Region: 82 - 132 Aligned: 51 Modelled: 51 Confidence: 75.5% Identity: 14% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 82 - 132 Aligned: 51 Modelled: 51 Confidence: 75.5% Identity: 14% PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Phyre2 PDB 1aqe chain A Region: 82 - 128 Aligned: 26 Modelled: 26 Confidence: 72.2% Identity: 35% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Cytochrome c3-like Phyre2 PDB 3f29 chain A Region: 82 - 127 Aligned: 35 Modelled: 46 Confidence: 70.0% Identity: 31% PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Phyre2 PDB 2cy3 chain A Region: 81 - 129 Aligned: 28 Modelled: 28 Confidence: 69.3% Identity: 29% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Cytochrome c3-like Phyre2 PDB 1jrx chain A Region: 77 - 127 Aligned: 39 Modelled: 51 Confidence: 65.1% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina Phyre2 PDB 1i77 chain A Region: 69 - 138 Aligned: 60 Modelled: 70 Confidence: 63.5% Identity: 15% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Cytochrome c3-like Phyre2 PDB 3mk7 chain B Region: 6 - 120 Aligned: 96 Modelled: 97 Confidence: 62.8% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase Phyre2 1 d1ogyb_ 2 c3o5aB_ 3 c1jniA_ 4 d1jnia_ 5 c2j7aE_ 6 c2vr0A_ 7 d2rdza1 8 d1qdba_ 9 c2p0bA_ 10 d1fs7a_ 11 c1fs9A_ 12 c1qo8A_ 13 d1oaha_ 14 c1oahA_ 15 d1aqea_ 16 c3f29A_ 17 d2cy3a_ 18 c1jrxA_ 19 d1i77a_ 20 c3mk7B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ogyb_ 100.0 43 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 2 c3o5aB_ 100.0 47 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 3 c1jniA_ 100.0 73 PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. 4 d1jnia_ 100.0 73 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 5 c2j7aE_ 95.5 29 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 6 c2vr0A_ 95.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 7 d2rdza1 91.8 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 8 d1qdba_ 91.2 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 9 c2p0bA_ 87.8 21 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb 10 d1fs7a_ 79.7 28 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 11 c1fs9A_ 79.7 28 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 12 c1qo8A_ 75.9 29 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 13 d1oaha_ 75.5 14 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 14 c1oahA_ 75.5 14 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 15 d1aqea_ 72.2 35 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 16 c3f29A_ 70.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite 17 d2cy3a_ 69.3 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 18 c1jrxA_ 65.1 38 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 19 d1i77a_ 63.5 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 20 c3mk7B_ 62.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 21 c2bq4A_ not modelled 60.0 36 PDB header:electron transport Chain: A: PDB Molecule:basic cytochrome c3; PDBTitle: crystal structure of type i cytochrome c3 from2 desulfovibrio africanus 22 c3ov0A_ not modelled 59.9 20 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996 23 c2j7aC_ not modelled 58.6 27 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 24 d1d4ca1 not modelled 58.2 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 25 d1ft5a_ not modelled 55.2 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 26 c3oueA_ not modelled 55.0 22 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 27 d1m1qa_ not modelled 51.5 25 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 28 d3caoa_ not modelled 50.5 33 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 29 d1gyoa_ not modelled 50.0 41 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 30 c2a3mA_ not modelled 50.0 21 PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) 31 d1sp3a_ not modelled 49.2 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 32 d1duwa_ not modelled 49.2 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 33 d1y0pa1 not modelled 49.0 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 34 d1h21a_ not modelled 48.8 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 35 d1cota_ not modelled 46.9 36 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 36 d1vyda_ not modelled 45.3 36 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 37 d1up9a_ not modelled 44.8 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 38 c3b47A_ not modelled 43.8 32 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0582 39 d3c2ca_ not modelled 42.7 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 40 c3ouqA_ not modelled 41.6 20 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 41 c3pmqA_ not modelled 37.3 20 PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf 42 c2czsB_ not modelled 36.9 29 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c, putative; PDBTitle: crystal structure analysis of the diheme c-type cytochrome dhc2 43 d1yeba_ not modelled 35.1 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 44 d1ql3a_ not modelled 34.4 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 45 d1rwja_ not modelled 34.0 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 46 c3m97X_ not modelled 31.9 24 PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans 47 c2elmA_ not modelled 31.6 45 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 10th c2h2 zinc finger of human2 zinc finger protein 406 48 c3o0rC_ not modelled 31.1 21 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 49 d1i8oa_ not modelled 30.8 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 50 d1qo8a1 not modelled 30.6 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 51 c2je2A_ not modelled 30.4 42 PDB header:metal binding protein Chain: A: PDB Molecule:cytochrome p460; PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form 52 d155ca_ not modelled 29.4 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 53 d1c6sa_ not modelled 29.3 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 54 d1jdla_ not modelled 28.5 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 55 d1ppjd1 not modelled 28.3 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 56 d1qn2a_ not modelled 27.0 36 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 57 d1j0pa_ not modelled 25.8 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 58 d1pbya1 not modelled 25.5 50 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 59 d1lmsa_ not modelled 25.4 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 60 c3h34A_ not modelled 25.3 47 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens 61 d1h32a2 not modelled 24.9 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 62 d1cxca_ not modelled 24.8 44 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 63 d3cx5d1 not modelled 24.4 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 64 c2zxyA_ not modelled 24.4 30 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 65 c3oa8B_ not modelled 24.4 18 PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax 66 c2yiuE_ not modelled 24.3 30 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 67 d1ofwa_ not modelled 24.2 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 68 c1p84D_ not modelled 24.1 38 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 69 c3cwbQ_ not modelled 23.8 38 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 70 c3b42B_ not modelled 23.7 27 PDB header:signaling protein Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935 71 c1zrtD_ not modelled 23.7 50 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 72 d1ycca_ not modelled 23.3 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 73 d351ca_ not modelled 23.2 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 74 d1wejf_ not modelled 23.1 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 75 c2d0sA_ not modelled 23.1 30 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 76 d1ytca_ not modelled 22.9 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 77 d1jmxa1 not modelled 22.9 50 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 78 c1z1nX_ not modelled 22.9 40 PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas 79 d1cora_ not modelled 22.7 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 c2fynH_ not modelled 22.0 22 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 81 d1j3sa_ not modelled 21.2 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 82 d1ccra_ not modelled 20.8 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 83 c2xtsD_ not modelled 20.7 24 PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus 84 d1h32b_ not modelled 20.1 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 85 d1fi3a_ not modelled 19.9 40 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 86 c3h4nB_ not modelled 19.4 42 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c7; PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens 87 c2jneA_ not modelled 19.3 57 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 88 d2jnea1 not modelled 19.3 57 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 89 c2bpbB_ not modelled 18.8 50 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 90 d2cvca1 not modelled 18.6 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 91 d1eb7a1 not modelled 18.4 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 92 c2c1dB_ not modelled 18.3 20 PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus 93 c2l4dA_ not modelled 18.2 20 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 94 d1os6a_ not modelled 18.1 33 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 95 d1cc5a_ not modelled 17.7 39 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 96 c2jrpA_ not modelled 17.4 57 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 97 d1ynra1 not modelled 17.3 30 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 98 c3facE_ not modelled 17.0 27 PDB header:unknown function Chain: E: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83. 99 d1nmla2 not modelled 16.9 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0