Phyre 2 Results for P0ABL3

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Email | l.a.kelley@imperial.ac.uk
Description | P0ABL3
Date | Thu Jan 5 11:15:46 GMT 2012
Unique Job ID | 28bb400d24cb4613

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1ogyb_
Top template information
Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
Confidence and coverage
Confidence: | 100.0% | Coverage: | 74%
111 residues ( 74% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | S | H | D | L | K | K | A | L | C | Q | W | T | A | M | L | A | L | V | V | S | G | A | V | W | A | A | N | G | V | D | F | S | Q | S | P | E | V | S | G | T | Q | E | G | A | I | R | M | P | K | E | Q | D | R | M | P | L | N | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | N | Q | P | P | M | I | P | H | S | V | E | G | Y | Q | V | T | T | N | T | N | R | C | L | Q | C | H | G | V | E | S | Y | R | T | T | G | A | P | R | I | S | P | T | H | F | M | D | S | D | G | K | V | G | A | E | V | A | P | R | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | .
Sequence |  | Y | F | C | L | Q | C | H | V | P | Q | A | D | T | A | P | I | V | G | N | T | F | T | P | S | K | G | Y | G | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1ogyb_ |

### PDB 1ogy chain B

Region: 36 - 146
Aligned: 111
Modelled: 111
Confidence: 100.0%
Identity: 43%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
2 |
| c3o5aB_ |

### PDB 3o5a chain B

Region: 43 - 146
Aligned: 98
Modelled: 96
Confidence: 100.0%
Identity: 47%
PDB header:oxidoreductase
Chain: B: PDB Molecule:diheme cytochrome c napb;
PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids

Phyre2
3 |
| c1jniA_ |

### PDB 1jni chain A

Region: 63 - 129
Aligned: 62
Modelled: 67
Confidence: 100.0%
Identity: 73%
PDB header:oxidoreductase
Chain: A: PDB Molecule:diheme cytochrome c napb;
PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae.

Phyre2
4 |
| d1jnia_ |

### PDB 1jni chain A

Region: 63 - 129
Aligned: 62
Modelled: 67
Confidence: 100.0%
Identity: 73%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
5 |
| c2j7aE_ |

### PDB 2j7a chain E

Region: 83 - 128
Aligned: 45
Modelled: 46
Confidence: 95.5%
Identity: 29%
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris

Phyre2
6 |
| c2vr0A_ |

### PDB 2vr0 chain A

Region: 83 - 128
Aligned: 45
Modelled: 46
Confidence: 95.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor

Phyre2
7 |
| d2rdza1 |

### PDB 2rdz chain A domain 1

Region: 56 - 128
Aligned: 63
Modelled: 73
Confidence: 91.8%
Identity: 21%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
8 |
| d1qdba_ |

### PDB 1qdb chain A

Region: 52 - 128
Aligned: 63
Modelled: 77
Confidence: 91.2%
Identity: 21%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
9 |
| c2p0bA_ |

### PDB 2p0b chain A

Region: 83 - 132
Aligned: 39
Modelled: 50
Confidence: 87.8%
Identity: 21%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-type protein nrfb;
PDBTitle: crystal structure of chemically-reduced e.coli nrfb

Phyre2
10 |
| d1fs7a_ |

### PDB 1fs7 chain A

Region: 83 - 128
Aligned: 46
Modelled: 46
Confidence: 79.7%
Identity: 28%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
11 |
| c1fs9A_ |

### PDB 1fs9 chain A

Region: 83 - 128
Aligned: 46
Modelled: 46
Confidence: 79.7%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex

Phyre2
12 |
| c1qo8A_ |

### PDB 1qo8 chain A

Region: 62 - 127
Aligned: 49
Modelled: 66
Confidence: 75.9%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase

Phyre2
13 |
| d1oaha_ |

### PDB 1oah chain A

Region: 82 - 132
Aligned: 51
Modelled: 51
Confidence: 75.5%
Identity: 14%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Di-heme elbow motif

Phyre2
14 |
| c1oahA_ |

### PDB 1oah chain A

Region: 82 - 132
Aligned: 51
Modelled: 51
Confidence: 75.5%
Identity: 14%
PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).

Phyre2
15 |
| d1aqea_ |

### PDB 1aqe chain A

Region: 82 - 128
Aligned: 26
Modelled: 26
Confidence: 72.2%
Identity: 35%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Cytochrome c3-like

Phyre2
16 |
| c3f29A_ |

### PDB 3f29 chain A

Region: 82 - 127
Aligned: 35
Modelled: 46
Confidence: 70.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:eight-heme nitrite reductase;
PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite

Phyre2
17 |
| d2cy3a_ |

### PDB 2cy3 chain A

Region: 81 - 129
Aligned: 28
Modelled: 28
Confidence: 69.3%
Identity: 29%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Cytochrome c3-like

Phyre2
18 |
| c1jrxA_ |

### PDB 1jrx chain A

Region: 77 - 127
Aligned: 39
Modelled: 51
Confidence: 65.1%
Identity: 38%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina

Phyre2
19 |
| d1i77a_ |

### PDB 1i77 chain A

Region: 69 - 138
Aligned: 60
Modelled: 70
Confidence: 63.5%
Identity: 15%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Cytochrome c3-like

Phyre2
20 |
| c3mk7B_ |

### PDB 3mk7 chain B

Region: 6 - 120
Aligned: 96
Modelled: 97
Confidence: 62.8%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o;
PDBTitle: the structure of cbb3 cytochrome oxidase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1ogyb_ |
|  | 100.0 | 43 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
2 | c3o5aB_ |
|  | 100.0 | 47 | PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids
3 | c1jniA_ |
|  | 100.0 | 73 | PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae.
4 | d1jnia_ |
|  | 100.0 | 73 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
5 | c2j7aE_ |
|  | 95.5 | 29 | PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
6 | c2vr0A_ |
|  | 95.0 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor
7 | d2rdza1 |
|  | 91.8 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
8 | d1qdba_ |
|  | 91.2 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
9 | c2p0bA_ |
|  | 87.8 | 21 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb
10 | d1fs7a_ |
|  | 79.7 | 28 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
11 | c1fs9A_ |
|  | 79.7 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex
12 | c1qo8A_ |
|  | 75.9 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
13 | d1oaha_ |
|  | 75.5 | 14 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
14 | c1oahA_ |
|  | 75.5 | 14 | PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
15 | d1aqea_ |
|  | 72.2 | 35 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
16 | c3f29A_ |
|  | 70.0 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite
17 | d2cy3a_ |
|  | 69.3 | 29 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
18 | c1jrxA_ |
|  | 65.1 | 38 | PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
19 | d1i77a_ |
|  | 63.5 | 15 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
20 | c3mk7B_ |
|  | 62.8 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase
21 | c2bq4A_ |
| not modelled | 60.0 | 36 | PDB header:electron transport Chain: A: PDB Molecule:basic cytochrome c3; PDBTitle: crystal structure of type i cytochrome c3 from2 desulfovibrio africanus
22 | c3ov0A_ |
| not modelled | 59.9 | 20 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996
23 | c2j7aC_ |
| not modelled | 58.6 | 27 | PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
24 | d1d4ca1 |
| not modelled | 58.2 | 26 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
25 | d1ft5a_ |
| not modelled | 55.2 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
26 | c3oueA_ |
| not modelled | 55.0 | 22 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996
27 | d1m1qa_ |
| not modelled | 51.5 | 25 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
28 | d3caoa_ |
| not modelled | 50.5 | 33 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
29 | d1gyoa_ |
| not modelled | 50.0 | 41 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
30 | c2a3mA_ |
| not modelled | 50.0 | 21 | PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form)
31 | d1sp3a_ |
| not modelled | 49.2 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
32 | d1duwa_ |
| not modelled | 49.2 | 23 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
33 | d1y0pa1 |
| not modelled | 49.0 | 22 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
34 | d1h21a_ |
| not modelled | 48.8 | 24 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
35 | d1cota_ |
| not modelled | 46.9 | 36 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
36 | d1vyda_ |
| not modelled | 45.3 | 36 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
37 | d1up9a_ |
| not modelled | 44.8 | 29 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
38 | c3b47A_ |
| not modelled | 43.8 | 32 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0582
39 | d3c2ca_ |
| not modelled | 42.7 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
40 | c3ouqA_ |
| not modelled | 41.6 | 20 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996
41 | c3pmqA_ |
| not modelled | 37.3 | 20 | PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf
42 | c2czsB_ |
| not modelled | 36.9 | 29 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome c, putative; PDBTitle: crystal structure analysis of the diheme c-type cytochrome dhc2
43 | d1yeba_ |
| not modelled | 35.1 | 27 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
44 | d1ql3a_ |
| not modelled | 34.4 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
45 | d1rwja_ |
| not modelled | 34.0 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
46 | c3m97X_ |
| not modelled | 31.9 | 24 | PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans
47 | c2elmA_ |
| not modelled | 31.6 | 45 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 10th c2h2 zinc finger of human2 zinc finger protein 406
48 | c3o0rC_ |
| not modelled | 31.1 | 21 | PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
49 | d1i8oa_ |
| not modelled | 30.8 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
50 | d1qo8a1 |
| not modelled | 30.6 | 21 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
51 | c2je2A_ |
| not modelled | 30.4 | 42 | PDB header:metal binding protein Chain: A: PDB Molecule:cytochrome p460; PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form
52 | d155ca_ |
| not modelled | 29.4 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
53 | d1c6sa_ |
| not modelled | 29.3 | 8 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
54 | d1jdla_ |
| not modelled | 28.5 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
55 | d1ppjd1 |
| not modelled | 28.3 | 38 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain
56 | d1qn2a_ |
| not modelled | 27.0 | 36 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
57 | d1j0pa_ |
| not modelled | 25.8 | 19 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
58 | d1pbya1 |
| not modelled | 25.5 | 50 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
59 | d1lmsa_ |
| not modelled | 25.4 | 31 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
60 | c3h34A_ |
| not modelled | 25.3 | 47 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens
61 | d1h32a2 |
| not modelled | 24.9 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA
62 | d1cxca_ |
| not modelled | 24.8 | 44 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
63 | d3cx5d1 |
| not modelled | 24.4 | 38 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain
64 | c2zxyA_ |
| not modelled | 24.4 | 30 | PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
65 | c3oa8B_ |
| not modelled | 24.4 | 18 | PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax
66 | c2yiuE_ |
| not modelled | 24.3 | 30 | PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
67 | d1ofwa_ |
| not modelled | 24.2 | 18 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
68 | c1p84D_ |
| not modelled | 24.1 | 38 | PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
69 | c3cwbQ_ |
| not modelled | 23.8 | 38 | PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
70 | c3b42B_ |
| not modelled | 23.7 | 27 | PDB header:signaling protein Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935
71 | c1zrtD_ |
| not modelled | 23.7 | 50 | PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
72 | d1ycca_ |
| not modelled | 23.3 | 31 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
73 | d351ca_ |
| not modelled | 23.2 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
74 | d1wejf_ |
| not modelled | 23.1 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
75 | c2d0sA_ |
| not modelled | 23.1 | 30 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
76 | d1ytca_ |
| not modelled | 22.9 | 26 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
77 | d1jmxa1 |
| not modelled | 22.9 | 50 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
78 | c1z1nX_ |
| not modelled | 22.9 | 40 | PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas
79 | d1cora_ |
| not modelled | 22.7 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
80 | c2fynH_ |
| not modelled | 22.0 | 22 | PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
81 | d1j3sa_ |
| not modelled | 21.2 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
82 | d1ccra_ |
| not modelled | 20.8 | 29 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
83 | c2xtsD_ |
| not modelled | 20.7 | 24 | PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
84 | d1h32b_ |
| not modelled | 20.1 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
85 | d1fi3a_ |
| not modelled | 19.9 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
86 | c3h4nB_ |
| not modelled | 19.4 | 42 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome c7; PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens
87 | c2jneA_ |
| not modelled | 19.3 | 57 | PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317.
88 | d2jnea1 |
| not modelled | 19.3 | 57 | Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like
89 | c2bpbB_ |
| not modelled | 18.8 | 50 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella
90 | d2cvca1 |
| not modelled | 18.6 | 19 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
91 | d1eb7a1 |
| not modelled | 18.4 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
92 | c2c1dB_ |
| not modelled | 18.3 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus
93 | c2l4dA_ |
| not modelled | 18.2 | 20 | PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
94 | d1os6a_ |
| not modelled | 18.1 | 33 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like
95 | d1cc5a_ |
| not modelled | 17.7 | 39 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
96 | c2jrpA_ |
| not modelled | 17.4 | 57 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
97 | d1ynra1 |
| not modelled | 17.3 | 30 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
98 | c3facE_ |
| not modelled | 17.0 | 27 | PDB header:unknown function Chain: E: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83.
99 | d1nmla2 |
| not modelled | 16.9 | 8 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0