13/01/2012 03:55:35 : INFO  : Run start: Fri Jan 13 03:55:33 GMT 2012
13/01/2012 03:55:42 : INFO  : Initialised job
13/01/2012 03:55:45 : INFO  : Renaming log file 'phyre2_20120113_035532.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/28bb400d24cb4613/phyre_20120113_035532.log'
13/01/2012 03:55:46 : INFO  : Initialised job:
Sequence
>batch____
MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQDRMPLNY
VNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVGAEVAPRR
YFCLQCHVPQADTAPIVGNTFTPSKGYGK

13/01/2012 03:55:48 : INFO  : Checked sequence
13/01/2012 03:55:52 : INFO  : Finding homologues with PSI-BLAST
13/01/2012 03:55:54 : INFO  : PSI-BLAST 3 iterations
13/01/2012 03:56:50 : INFO  : PSI-BLAST 5 iterations
13/01/2012 03:57:46 : INFO  : Finished PSI-BLAST
13/01/2012 03:57:48 : INFO  : Running Buildali to generate a3m file
13/01/2012 04:02:34 : INFO  : Converting to HMM
13/01/2012 04:02:37 : INFO  : Calibrating HMM
13/01/2012 04:02:49 : INFO  : Searching HMM database
13/01/2012 04:05:55 : INFO  : Finished buildali
13/01/2012 04:05:57 : INFO  : Predicting secondary structure
13/01/2012 04:06:06 : INFO  : Predicted secondary structure (PSI-Pred)
13/01/2012 04:06:08 : INFO  : Predicting Disordered regions
13/01/2012 04:06:12 : INFO  : Predicted Disorder (Disopred)
13/01/2012 04:06:14 : INFO  : Running memsat_svm check
13/01/2012 04:10:09 : INFO  : Globular protein
13/01/2012 04:10:10 : INFO  : Predicted Transmembrane (memsat_svm) ID '28bb400d24cb4613'
13/01/2012 04:10:12 : INFO  : Initialising fold library search
13/01/2012 04:10:16 : INFO  : Initialised search input
13/01/2012 04:10:19 : INFO  : Building Ensemble models
13/01/2012 04:10:23 : INFO  : Building hh.d1ogyb_.model.1.pdb
13/01/2012 04:10:42 : INFO  : Building hh.c3o5aB_.model.2.pdb
13/01/2012 04:10:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28bb400d24cb4613/hh.c3o5aB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28bb400d24cb4613/c3o5aB_.2.pdb
13/01/2012 04:11:00 : INFO  : Building hh.c3mk7B_.model.3.pdb
13/01/2012 04:11:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28bb400d24cb4613/hh.c3mk7B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28bb400d24cb4613/c3mk7B_.20.pdb
13/01/2012 04:11:21 : INFO  : Building d1ogyb_.1.pdb
13/01/2012 04:11:37 : INFO  : Building c3o5aB_.2.pdb
13/01/2012 04:11:55 : INFO  : Building c1jniA_.3.pdb
13/01/2012 04:12:10 : INFO  : Building d1jnia_.4.pdb
13/01/2012 04:12:25 : INFO  : Building c2j7aE_.5.pdb
13/01/2012 04:12:41 : INFO  : Building c2vr0A_.6.pdb
13/01/2012 04:12:58 : INFO  : Building d2rdza1.7.pdb
13/01/2012 04:13:14 : INFO  : Building d1qdba_.8.pdb
13/01/2012 04:13:30 : INFO  : Building c2p0bA_.9.pdb
13/01/2012 04:13:45 : INFO  : Building d1fs7a_.10.pdb
13/01/2012 04:14:01 : INFO  : Building c1fs9A_.11.pdb
13/01/2012 04:14:17 : INFO  : Building c1qo8A_.12.pdb
13/01/2012 04:14:35 : INFO  : Building d1oaha_.13.pdb
13/01/2012 04:14:52 : INFO  : Building c1oahA_.14.pdb
13/01/2012 04:15:09 : INFO  : Building d1aqea_.15.pdb
13/01/2012 04:15:24 : INFO  : Building c3f29A_.16.pdb
13/01/2012 04:15:40 : INFO  : Building d2cy3a_.17.pdb
13/01/2012 04:15:54 : INFO  : Building c1jrxA_.18.pdb
13/01/2012 04:16:07 : INFO  : Building d1i77a_.19.pdb
13/01/2012 04:16:21 : INFO  : Building c3mk7B_.20.pdb
13/01/2012 04:17:29 : INFO  : Finished HH model building
13/01/2012 04:17:30 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
13/01/2012 04:18:27 : INFO  : html domain output complete ID '28bb400d24cb4613'
13/01/2012 04:28:11 : INFO  : Run end  : Fri Jan 13 04:28:10 GMT 2012
