Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	L	V	A	C	G	T	G	M	S	T	S	T	M	I	A	H	K	L	Q	E	F	L	T	E	Q	G	I	S	A	T	T	A	Q	C	C	L	N	E	I	P	L	N	C	N	G	M	D	L	I	V	T	S	M	R	T	N
Secondary structure
SS confidence
Disorder		?																																												?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Sequence		S	D	Y	G	I	P	T	L	N	G	A	A	L	L	T	G	I	N	D	D	A	L	K	Q	Q	I	K	A	L	L	T	Q
Secondary structure
SS confidence
Disorder																																?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tvm chain A Region: 2 - 91 Aligned: 90 Modelled: 90 Confidence: 99.8% Identity: 34% PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system Phyre2 PDB 3czc chain A Region: 1 - 91 Aligned: 91 Modelled: 91 Confidence: 99.8% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans Phyre2 PDB 1vkr chain A Region: 1 - 91 Aligned: 86 Modelled: 91 Confidence: 99.6% Identity: 22% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 1vkr chain A Region: 1 - 91 Aligned: 86 Modelled: 91 Confidence: 99.6% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii Phyre2 PDB 3sqn chain B Region: 2 - 88 Aligned: 82 Modelled: 86 Confidence: 99.1% Identity: 13% PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis Phyre2 PDB 1iib chain A Region: 2 - 92 Aligned: 90 Modelled: 91 Confidence: 98.9% Identity: 16% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 2l2q chain A Region: 3 - 92 Aligned: 89 Modelled: 90 Confidence: 98.6% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi Phyre2 PDB 3nbm chain A Region: 3 - 91 Aligned: 88 Modelled: 89 Confidence: 98.5% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. Phyre2 PDB 2kyr chain A Region: 2 - 90 Aligned: 89 Modelled: 89 Confidence: 97.4% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 Phyre2 PDB 2r48 chain A domain 1 Region: 4 - 88 Aligned: 85 Modelled: 85 Confidence: 96.8% Identity: 16% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2r4q chain A domain 1 Region: 4 - 88 Aligned: 83 Modelled: 83 Confidence: 94.6% Identity: 17% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2hnb chain A Region: 1 - 57 Aligned: 57 Modelled: 57 Confidence: 94.0% Identity: 23% PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin Phyre2 PDB 1ycg chain A domain 1 Region: 1 - 59 Aligned: 59 Modelled: 59 Confidence: 93.8% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3rof chain A Region: 1 - 38 Aligned: 38 Modelled: 38 Confidence: 93.7% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa; PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa Phyre2 PDB 2gi4 chain A Region: 1 - 41 Aligned: 41 Modelled: 41 Confidence: 93.5% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. Phyre2 PDB 1vme chain A domain 1 Region: 2 - 59 Aligned: 58 Modelled: 58 Confidence: 93.0% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1f4p chain A Region: 3 - 58 Aligned: 56 Modelled: 56 Confidence: 92.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2l18 chain A Region: 1 - 29 Aligned: 29 Modelled: 29 Confidence: 91.9% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state Phyre2 PDB 3f6s chain I Region: 3 - 66 Aligned: 64 Modelled: 64 Confidence: 91.0% Identity: 19% PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers Phyre2 PDB 2wc1 chain A Region: 1 - 64 Aligned: 64 Modelled: 64 Confidence: 90.4% Identity: 13% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Phyre2 1 c1tvmA_ 2 c3czcA_ 3 d1vkra_ 4 c1vkrA_ 5 c3sqnB_ 6 d1iiba_ 7 c2l2qA_ 8 c3nbmA_ 9 c2kyrA_ 10 d2r48a1 11 d2r4qa1 12 c2hnbA_ 13 d1ycga1 14 c3rofA_ 15 c2gi4A_ 16 d1vmea1 17 d1f4pa_ 18 c2l18A_ 19 c3f6sI_ 20 c2wc1A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tvmA_ 99.8 34 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 2 c3czcA_ 99.8 26 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 3 d1vkra_ 99.6 22 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 4 c1vkrA_ 99.6 22 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 5 c3sqnB_ 99.1 13 PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis 6 d1iiba_ 98.9 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 7 c2l2qA_ 98.6 22 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 8 c3nbmA_ 98.5 16 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 9 c2kyrA_ 97.4 22 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 10 d2r48a1 96.8 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 11 d2r4qa1 94.6 17 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 12 c2hnbA_ 94.0 23 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 13 d1ycga1 93.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 14 c3rofA_ 93.7 16 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa; PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa 15 c2gi4A_ 93.5 20 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 16 d1vmea1 93.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 17 d1f4pa_ 92.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 18 c2l18A_ 91.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state 19 c3f6sI_ 91.0 19 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 20 c2wc1A_ 90.4 13 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 21 d1ja1a2 not modelled 89.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 22 d1e5da1 not modelled 89.8 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 23 d1ydga_ not modelled 89.6 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 24 d1b1ca_ not modelled 89.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 25 d1tlla2 not modelled 88.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 26 d1dg9a_ not modelled 88.6 20 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 27 c3pfnB_ not modelled 86.5 18 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 28 c1zggA_ not modelled 86.1 13 PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis 29 c2wmyH_ not modelled 85.8 24 PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate. 30 d5pnta_ not modelled 85.6 20 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 31 c2fekA_ not modelled 85.4 25 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: structure of a protein tyrosine phosphatase 32 c1u2pA_ not modelled 85.1 13 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution 33 c1bvyF_ not modelled 84.9 27 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 34 d1bvyf_ not modelled 84.9 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 35 c3hr4C_ not modelled 83.9 11 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 36 c1vmeB_ not modelled 83.7 14 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 37 d2arka1 not modelled 82.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 38 c3fniA_ not modelled 82.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 39 c3edoA_ not modelled 82.0 16 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 40 c2cwdA_ not modelled 82.0 18 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8 41 c2ohiB_ not modelled 81.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 42 d1ykga1 not modelled 80.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 43 c2an1D_ not modelled 80.2 23 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 44 d2a5la1 not modelled 79.5 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 45 d5nula_ not modelled 79.3 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 46 d1u0ta_ not modelled 79.1 19 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 47 d1jf8a_ not modelled 78.3 26 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 48 c3hlyA_ not modelled 78.1 13 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 49 c3jviA_ not modelled 78.0 10 PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica 50 c3rpeA_ not modelled 78.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 51 d1yoba1 not modelled 77.2 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 52 c3n53B_ not modelled 77.0 16 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 53 c3d7nA_ not modelled 76.6 12 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 54 d1czna_ not modelled 76.1 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 55 d1t5ba_ not modelled 73.6 23 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 56 d2fcra_ not modelled 72.8 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 57 c3klbA_ not modelled 72.5 14 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 58 d1d1qa_ not modelled 71.9 5 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 59 c3rh0A_ not modelled 69.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 60 c2q5cA_ not modelled 68.6 16 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 61 d1qrda_ not modelled 68.4 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 62 d2fz5a1 not modelled 68.2 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 63 c3afoB_ not modelled 68.2 16 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 64 c2ppwA_ not modelled 67.8 25 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 65 c3he8A_ not modelled 67.3 38 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 66 c3onoA_ not modelled 66.5 25 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 67 c3m1pA_ not modelled 66.5 25 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 68 c3k7pA_ not modelled 66.5 25 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 69 d1oboa_ not modelled 66.1 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 70 c3s5pA_ not modelled 65.9 31 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 71 c1e5dA_ not modelled 65.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 72 d1nn4a_ not modelled 64.9 31 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 73 d1y1la_ not modelled 64.3 17 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 74 d2vvpa1 not modelled 63.9 19 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 75 d1jl3a_ not modelled 61.2 22 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 76 c3ia7A_ not modelled 60.7 24 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 77 c3c5yD_ not modelled 59.9 29 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 78 d1kgda_ not modelled 59.2 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 79 d2eyqa5 not modelled 58.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 80 c3i42A_ not modelled 57.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 81 d1p3da1 not modelled 57.2 19 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 82 c3eqzB_ not modelled 55.5 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 83 c1j9zB_ not modelled 55.2 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 84 d2qwxa1 not modelled 55.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 85 c1ychD_ not modelled 54.7 17 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 86 d1p8aa_ not modelled 53.6 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 87 c3b6iB_ not modelled 53.0 18 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 88 c1wv9B_ not modelled 52.3 26 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8 89 c3qd5B_ not modelled 51.6 27 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 90 c2q9uB_ not modelled 50.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 91 c3t38B_ not modelled 48.7 15 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 92 c2ejbA_ not modelled 45.6 30 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 93 d1o1xa_ not modelled 45.4 27 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 94 d1s5pa_ not modelled 44.7 36 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 95 d1a4ia1 not modelled 44.6 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 96 c3dzcA_ not modelled 42.1 24 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 97 c3p0rA_ not modelled 40.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 98 d1q1aa_ not modelled 40.5 43 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 99 c2jrlA_ not modelled 39.7 23 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 100 c3etjB_ not modelled 39.5 26 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 101 c3nhzA_ not modelled 39.5 19 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 102 c3i2vA_ not modelled 39.4 30 PDB header:transferase Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3; PDBTitle: crystal structure of human mocs3 rhodanese-like domain 103 c1ly1A_ not modelled 37.2 28 PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase 104 d1ly1a_ not modelled 37.2 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 105 d2b4ya1 not modelled 36.7 36 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 106 d1fuea_ not modelled 36.7 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 107 d1rlia_ not modelled 34.8 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 108 c1a4iB_ not modelled 34.3 12 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase / PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase 109 c1k97A_ not modelled 34.0 18 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 110 d2z98a1 not modelled 33.0 24 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 111 c2i2aA_ not modelled 32.9 13 PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes 112 d1svia_ not modelled 32.1 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 113 d1j8fa_ not modelled 31.4 36 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 114 c3lcmB_ not modelled 31.4 22 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 115 c3cfyA_ not modelled 31.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 116 c2zkiH_ not modelled 30.8 18 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 117 c1z0zC_ not modelled 30.7 19 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 118 d1z0sa1 not modelled 30.7 19 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 119 d1vhwa_ not modelled 29.5 12 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 120 d1cp2a_ not modelled 29.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0