Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	A	M	K	Y	N	D	L	R	D	F	L	T	L	L	E	Q	Q	G	E	L	K	R	I	T	L	P	V	D	P	H	L	E	I	T	E	I	A	D	R	T	L	R	A	G	G	P	A	L	L	F	E	N	P	K	G	Y	S	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	V	L	C	N	L	F	G	T	P	K	R	V	A	M	G	M	G	Q	E	D	V	S	A	L	R	E	V	G	K	L	L	A	F	L	K	E	P	E	P	P	K	G	F	R	D	L	F	D	K	L	P	Q	F	K	Q	V	L	N	M
Secondary structure
SS confidence
Disorder																							?												?	?	?	?	?	?	?	?	?	?							?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	T	K	R	L	R	G	A	P	C	Q	Q	K	I	V	S	G	D	D	V	D	L	N	R	I	P	I	M	T	C	W	P	E	D	A	A	P	L	I	T	W	G	L	T	V	T	R	G	P	H	K	E	R	Q	N	L	G	I	Y	R
Secondary structure
SS confidence
Disorder		?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	Q	L	I	G	K	N	K	L	I	M	R	W	L	S	H	R	G	G	A	L	D	Y	Q	E	W	C	A	A	H	P	G	E	R	F	P	V	S	V	A	L	G	A	D	P	A	T	I	L	G	A	V	T	P	V	P	D	T	L	S
Secondary structure
SS confidence
Disorder																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	Y	A	F	A	G	L	L	R	G	T	K	T	E	V	V	K	C	I	S	N	D	L	E	V	P	A	S	A	E	I	V	L	E	G	Y	I	E	Q	G	E	T	A	P	E	G	P	Y	G	D	H	T	G	Y	Y	N	E	V	D	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	P	V	F	T	V	T	H	I	T	Q	R	E	D	A	I	Y	H	S	T	Y	T	G	R	P	P	D	E	P	A	V	L	G	V	A	L	N	E	V	F	V	P	I	L	Q	K	Q	F	P	E	I	V	D	F	Y	L	P	P	E	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		C	S	Y	R	L	A	V	V	T	I	K	K	Q	Y	A	G	H	A	K	R	V	M	M	G	V	W	S	F	L	R	Q	F	M	Y	T	K	F	V	I	V	C	D	D	D	V	N	A	R	D	W	N	D	V	I	W	A	I	T	T	R
Secondary structure
SS confidence
Disorder																															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		M	D	P	A	R	D	T	V	L	V	E	N	T	P	I	D	Y	L	D	F	A	S	P	V	S	G	L	G	S	K	M	G	L	D	A	T	N	K	W	P	G	E	T	Q	R	E	W	G	R	P	I	K	K	D	P	D	V	V	A	H
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?															?	?	?	?		?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Sequence		I	D	A	I	W	D	E	L	A	I	F	N	N	G	K	S	A
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2idb chain B Region: 7 - 492 Aligned: 455 Modelled: 459 Confidence: 100.0% Identity: 98% PDB header:lyase Chain: B: PDB Molecule:3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PDBTitle: crystal structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase2 (ubid) from escherichia coli, northeast structural genomics target3 er459. Phyre2 PDB 2idb chain A domain 1 Region: 6 - 325 Aligned: 308 Modelled: 320 Confidence: 100.0% Identity: 98% Fold: Split barrel-like Superfamily: FMN-binding split barrel Family: UbiD middle domain-like Phyre2 PDB 2idb chain A domain 2 Region: 326 - 491 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 97% Fold: UbiD C-terminal domain-like Superfamily: UbiD C-terminal domain-like Family: UbiD C-terminal domain-like Phyre2 PDB 3bpk chain B Region: 162 - 316 Aligned: 142 Modelled: 155 Confidence: 68.5% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b; PDBTitle: crystal structure of nitrilotriacetate monooxygenase2 component b from bacillus cereus Phyre2 PDB 3e4v chain A Region: 163 - 315 Aligned: 127 Modelled: 145 Confidence: 59.7% Identity: 15% PDB header:flavoprotein Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein; PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution Phyre2 PDB 1eje chain A Region: 162 - 316 Aligned: 130 Modelled: 155 Confidence: 57.5% Identity: 14% Fold: Split barrel-like Superfamily: FMN-binding split barrel Family: NADH:FMN oxidoreductase-like Phyre2 PDB 3ibp chain A Region: 382 - 434 Aligned: 41 Modelled: 49 Confidence: 35.8% Identity: 22% PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb Phyre2 PDB 3fge chain A Region: 162 - 316 Aligned: 134 Modelled: 149 Confidence: 17.1% Identity: 7% PDB header:oxidoreductase Chain: A: PDB Molecule:putative flavin reductase with split barrel domain; PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution Phyre2 PDB 2k29 chain A Region: 471 - 491 Aligned: 21 Modelled: 21 Confidence: 16.8% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb Phyre2 PDB 2iu6 chain B Region: 367 - 409 Aligned: 42 Modelled: 43 Confidence: 16.6% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:dihydroxyacetone kinase; PDBTitle: regulation of the dha operon of lactococcus lactis Phyre2 PDB 2i46 chain A Region: 459 - 488 Aligned: 30 Modelled: 30 Confidence: 16.5% Identity: 23% PDB header:protein binding Chain: A: PDB Molecule:adrenocortical dysplasia protein homolog; PDBTitle: crystal structure of human tpp1 Phyre2 PDB 1j98 chain A Region: 286 - 295 Aligned: 9 Modelled: 10 Confidence: 16.4% Identity: 67% Fold: LuxS/MPP-like metallohydrolase Superfamily: LuxS/MPP-like metallohydrolase Family: Autoinducer-2 production protein LuxS Phyre2 PDB 1uv7 chain A Region: 1 - 31 Aligned: 31 Modelled: 31 Confidence: 15.8% Identity: 10% PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae Phyre2 PDB 1uv7 chain A Region: 1 - 31 Aligned: 31 Modelled: 31 Confidence: 15.8% Identity: 10% Fold: RRF/tRNA synthetase additional domain-like Superfamily: General secretion pathway protein M, EpsM Family: General secretion pathway protein M, EpsM Phyre2 PDB 1oi2 chain A Region: 367 - 409 Aligned: 42 Modelled: 43 Confidence: 15.7% Identity: 26% Fold: DAK1/DegV-like Superfamily: DAK1/DegV-like Family: DAK1 Phyre2 PDB 3ct4 chain B Region: 367 - 409 Aligned: 42 Modelled: 43 Confidence: 15.1% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, PDBTitle: structure of dha-kinase subunit dhak from l. lactis Phyre2 PDB 1vje chain A Region: 286 - 295 Aligned: 9 Modelled: 10 Confidence: 15.1% Identity: 56% Fold: LuxS/MPP-like metallohydrolase Superfamily: LuxS/MPP-like metallohydrolase Family: Autoinducer-2 production protein LuxS Phyre2 PDB 2pjp chain A Region: 7 - 48 Aligned: 42 Modelled: 42 Confidence: 14.5% Identity: 21% PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna Phyre2 PDB 1lva chain A domain 3 Region: 6 - 28 Aligned: 23 Modelled: 23 Confidence: 14.5% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal fragment of elongation factor SelB Phyre2 PDB 1un8 chain A domain 4 Region: 367 - 409 Aligned: 42 Modelled: 43 Confidence: 14.2% Identity: 19% Fold: DAK1/DegV-like Superfamily: DAK1/DegV-like Family: DAK1 Phyre2 1 c2idbB_ 2 d2idba1 3 d2idba2 4 c3bpkB_ 5 c3e4vA_ 6 d1ejea_ 7 c3ibpA_ 8 c3fgeA_ 9 c2k29A_ 10 c2iu6B_ 11 c2i46A_ 12 d1j98a_ 13 c1uv7A_ 14 d1uv7a_ 15 d1oi2a_ 16 c3ct4B_ 17 d1vjea_ 18 c2pjpA_ 19 d1lvaa3 20 d1un8a4 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2idbB_ 100.0 98 PDB header:lyase Chain: B: PDB Molecule:3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PDBTitle: crystal structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase2 (ubid) from escherichia coli, northeast structural genomics target3 er459. 2 d2idba1 100.0 98 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:UbiD middle domain-like 3 d2idba2 100.0 97 Fold:UbiD C-terminal domain-like Superfamily:UbiD C-terminal domain-like Family:UbiD C-terminal domain-like 4 c3bpkB_ 68.5 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b; PDBTitle: crystal structure of nitrilotriacetate monooxygenase2 component b from bacillus cereus 5 c3e4vA_ 59.7 15 PDB header:flavoprotein Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein; PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution 6 d1ejea_ 57.5 14 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:NADH:FMN oxidoreductase-like 7 c3ibpA_ 35.8 22 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb 8 c3fgeA_ 17.1 7 PDB header:oxidoreductase Chain: A: PDB Molecule:putative flavin reductase with split barrel domain; PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution 9 c2k29A_ 16.8 14 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 10 c2iu6B_ 16.6 19 PDB header:transferase Chain: B: PDB Molecule:dihydroxyacetone kinase; PDBTitle: regulation of the dha operon of lactococcus lactis 11 c2i46A_ 16.5 23 PDB header:protein binding Chain: A: PDB Molecule:adrenocortical dysplasia protein homolog; PDBTitle: crystal structure of human tpp1 12 d1j98a_ 16.4 67 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 13 c1uv7A_ 15.8 10 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 14 d1uv7a_ 15.8 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 15 d1oi2a_ 15.7 26 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DAK1 16 c3ct4B_ 15.1 24 PDB header:transferase Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, PDBTitle: structure of dha-kinase subunit dhak from l. lactis 17 d1vjea_ 15.1 56 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 18 c2pjpA_ 14.5 21 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna 19 d1lvaa3 14.5 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 20 d1un8a4 14.2 19 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DAK1 21 d1h32a1 not modelled 13.1 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 22 d2bj7a1 not modelled 12.5 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 23 d2ezwa1 not modelled 12.4 28 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 24 c1iweB_ not modelled 12.1 14 PDB header:ligase Chain: B: PDB Molecule:adenylosuccinate synthetase; PDBTitle: imp complex of the recombinant mouse-muscle2 adenylosuccinate synthetase 25 d1cf1a1 not modelled 10.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 26 c2ixaA_ not modelled 10.4 20 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 27 d1iwea_ not modelled 9.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 28 c2b7fD_ not modelled 9.4 23 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:htlv protease; PDBTitle: crystal structure of human t-cell leukemia virus protease, a novel2 target for anti-cancer design 29 c2wmmA_ not modelled 9.2 25 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: crystal structure of the hinge domain of mukb 30 d1p9ba_ not modelled 9.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 31 c2rjzA_ not modelled 9.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 32 c3nuhB_ not modelled 9.1 18 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function 33 c3ip3D_ not modelled 8.3 21 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, putative; PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima 34 c1un9B_ not modelled 8.1 19 PDB header:kinase Chain: B: PDB Molecule:dihydroxyacetone kinase; PDBTitle: crystal structure of the dihydroxyacetone kinase from c.2 freundii in complex with amp-pnp and mg2+ 35 d1ldda_ not modelled 7.8 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 36 d1kwga1 not modelled 7.8 13 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 37 c5acnA_ not modelled 7.0 18 PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal 38 d1acoa2 not modelled 7.0 18 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 39 d1g8fa3 not modelled 6.9 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 40 c1ayrA_ not modelled 6.8 12 PDB header:sensory transduction Chain: A: PDB Molecule:arrestin; PDBTitle: arrestin from bovine rod outer segments 41 d1vjja3 not modelled 6.8 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 42 d2gaxa1 not modelled 6.5 31 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 43 c2zjtB_ not modelled 6.4 21 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: crystal structure of dna gyrase b' domain sheds lights on2 the mechanism for t-segment navigation 44 d1qmga1 not modelled 6.2 43 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) 45 d1na6a1 not modelled 5.9 33 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:Type II restriction endonuclease effector domain 46 d3bvua3 not modelled 5.9 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase 47 d1ex0a3 not modelled 5.9 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 48 c2ow7A_ not modelled 5.9 21 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 49 c3fofD_ not modelled 5.8 11 PDB header:isomerase/dna Chain: D: PDB Molecule:dna topoisomerase 4 subunit b; PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases 50 d2hzab1 not modelled 5.7 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 51 c3bnkB_ not modelled 5.7 14 PDB header:electron transport Chain: B: PDB Molecule:flavoredoxin; PDBTitle: x-ray crystal structure of flavoredoxin from methanosarcina2 acetivorans 52 c1htyA_ not modelled 5.6 18 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase ii; PDBTitle: golgi alpha-mannosidase ii 53 c2zkra_ not modelled 5.6 18 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 54 d1rl6a1 not modelled 5.4 30 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 55 d1vqoe1 not modelled 5.3 26 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 56 c3r7tA_ not modelled 5.1 20 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0