Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	S	N	I	H	G	I	S	C	T	A	N	N	Y	L	K	Q	A	W	N	D	I	K	N	E	Y	E	K	N	Q	T	Y	S	I	T	L	F	E	N	T	L	V	C	F	M	R	L	Y	N	E	L	R	R	K	V	N	E	E	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																				?	?																															?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	P	C	L	E	C	E	S	L	E	K	E	F	E	E	M	Q	N	D	N	D	L	S	L	F	M	R	I	L	R	T	N	D	T	Q	I	Y	S	G	V	S	G	G	I	T	Y	T	I	Q	Y	V	R	D	I	D	I	V	R	V	S
Secondary structure
SS confidence
Disorder																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	P	G	R	A	S	E	S	I	T	D	F	K	G	Y	Y	W	Y	N	F	M	E	Y	I	E	N	I	N	A	C	D	D	V	F	S	E	Y	C	F	D	D	E	N	I	S	V	Q	P	E	R	I	N	T	P	G	I	S	D	L	D
Secondary structure
SS confidence
Disorder					?	?	?	?																																									?						?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	D	I	D	L	S	G	I	S	F	I	Q	R	E	T	N	Q	A	L	G	L	K	Y	A	P	V	D	G	D	G	Y	C	L	L	R	A	I	L	V	L	K	Q	H	D	Y	S	W	A	L	V	S	Y	K	M	Q	K	E	V	Y	N
Secondary structure
SS confidence
Disorder																																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	F	I	K	M	V	D	K	K	T	I	E	A	L	V	D	T	A	F	Y	N	L	R	E	D	V	K	T	L	F	G	V	D	L	Q	S	D	N	Q	I	Q	G	Q	S	S	L	M	S	W	S	F	L	F	F	K	K	Q	F	I	D
Secondary structure
SS confidence
Disorder												?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	C	L	N	N	E	K	C	I	L	H	L	P	E	F	I	F	N	D	N	K	N	L	L	A	L	D	T	D	T	S	D	R	I	K	A	V	K	N	F	L	V	V	L	S	D	S	I	C	S	L	F	I	V	N	S	N	V	A	S
Secondary structure
SS confidence
Disorder																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Sequence		I	S	L	G	N	E	S	F	S	T	D	E	D	L	E	Y	G	Y	L	M	N	T	G	N	H	Y	D	V	Y	L	P	P	E	L	F	A	Q	A	Y	K	L	N	N	K	E	M	N	A	Q	L	D	Y	L	N	R	Y	A	I
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?																															?	?	?	?		?								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pfy chain A Region: 191 - 217 Aligned: 27 Modelled: 27 Confidence: 93.3% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 Phyre2 PDB 2zfy chain A Region: 203 - 218 Aligned: 16 Modelled: 16 Confidence: 80.8% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otub1; PDBTitle: crystal structure of human otubain 1 Phyre2 PDB 3c0r chain C Region: 201 - 217 Aligned: 17 Modelled: 17 Confidence: 80.5% Identity: 47% PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin Phyre2 PDB 3pt2 chain A Region: 196 - 217 Aligned: 22 Modelled: 22 Confidence: 72.8% Identity: 27% PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin Phyre2 PDB 1tff chain A Region: 203 - 218 Aligned: 16 Modelled: 16 Confidence: 69.4% Identity: 31% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2) Phyre2 PDB 2d32 chain A domain 1 Region: 315 - 410 Aligned: 85 Modelled: 96 Confidence: 51.7% Identity: 31% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Glutamate-cysteine ligase Phyre2 PDB 3i7f chain A Region: 282 - 352 Aligned: 69 Modelled: 71 Confidence: 41.2% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Phyre2 PDB 1u9p chain A Region: 383 - 410 Aligned: 28 Modelled: 28 Confidence: 39.3% Identity: 25% PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc Phyre2 PDB 1asy chain A Region: 282 - 352 Aligned: 69 Modelled: 71 Confidence: 36.1% Identity: 19% PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Phyre2 PDB 3m4q chain A Region: 282 - 352 Aligned: 64 Modelled: 71 Confidence: 35.9% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) Phyre2 PDB 1mnt chain A Region: 385 - 410 Aligned: 26 Modelled: 26 Confidence: 27.8% Identity: 27% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1b8a chain B Region: 282 - 348 Aligned: 65 Modelled: 67 Confidence: 23.7% Identity: 15% PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Phyre2 PDB 3ln7 chain A Region: 376 - 409 Aligned: 34 Modelled: 34 Confidence: 23.4% Identity: 32% PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida Phyre2 PDB 1ppj chain W Region: 20 - 29 Aligned: 10 Modelled: 10 Confidence: 20.5% Identity: 60% Fold: Single transmembrane helix Superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Phyre2 PDB 1ppj chain J Region: 20 - 29 Aligned: 10 Modelled: 10 Confidence: 19.0% Identity: 60% Fold: Single transmembrane helix Superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Phyre2 PDB 2out chain A domain 1 Region: 187 - 209 Aligned: 23 Modelled: 23 Confidence: 17.3% Identity: 43% Fold: LEM/SAP HeH motif Superfamily: Rho N-terminal domain-like Family: YqbF C-terminal domain-like Phyre2 PDB 3ln6 chain A Region: 376 - 405 Aligned: 30 Modelled: 30 Confidence: 16.6% Identity: 33% PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae Phyre2 PDB 2gp4 chain A domain 1 Region: 97 - 125 Aligned: 29 Modelled: 28 Confidence: 16.1% Identity: 38% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: IlvD/EDD C-terminal domain-like Phyre2 PDB 2vfj chain A Region: 206 - 218 Aligned: 13 Modelled: 13 Confidence: 16.1% Identity: 46% PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor; PDBTitle: structure of the a20 ovarian tumour (otu) domain Phyre2 PDB 1y1o chain A Region: 113 - 136 Aligned: 24 Modelled: 24 Confidence: 16.0% Identity: 46% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: RecU-like Phyre2 1 c3pfyA_ 2 c2zfyA_ 3 c3c0rC_ 4 c3pt2A_ 5 d1tffa_ 6 d2d32a1 7 c3i7fA_ 8 c1u9pA_ 9 c1asyA_ 10 c3m4qA_ 11 d1mnta_ 12 c1b8aB_ 13 c3ln7A_ 14 d1ppjw_ 15 d1ppjj_ 16 d2outa1 17 c3ln6A_ 18 d2gp4a1 19 c2vfjA_ 20 d1y1oa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pfyA_ 93.3 26 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 2 c2zfyA_ 80.8 31 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otub1; PDBTitle: crystal structure of human otubain 1 3 c3c0rC_ 80.5 47 PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin 4 c3pt2A_ 72.8 27 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin 5 d1tffa_ 69.4 31 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 6 d2d32a1 51.7 31 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamate-cysteine ligase 7 c3i7fA_ 41.2 19 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 8 c1u9pA_ 39.3 25 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 9 c1asyA_ 36.1 19 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 10 c3m4qA_ 35.9 19 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 11 d1mnta_ 27.8 27 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 12 c1b8aB_ 23.7 15 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 13 c3ln7A_ 23.4 32 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida 14 d1ppjw_ 20.5 60 Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 15 d1ppjj_ 19.0 60 Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 16 d2outa1 17.3 43 Fold:LEM/SAP HeH motif Superfamily:Rho N-terminal domain-like Family:YqbF C-terminal domain-like 17 c3ln6A_ 16.6 33 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae 18 d2gp4a1 16.1 38 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 19 c2vfjA_ 16.1 46 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor; PDBTitle: structure of the a20 ovarian tumour (otu) domain 20 d1y1oa_ 16.0 46 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:RecU-like 21 c1y1oC_ not modelled 16.0 46 PDB header:recombination Chain: C: PDB Molecule:penicillin-binding protein-related factor a; PDBTitle: x-ray crystal structure of penicillin-binding protein-2 related factor a from bacillus stearothermophilus 22 c3dkbA_ not modelled 15.9 46 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3; PDBTitle: crystal structure of a20, 2.5 angstrom 23 c3c0mB_ not modelled 13.6 28 PDB header:toxin Chain: B: PDB Molecule:aerolysin; PDBTitle: crystal structure of the proaerolysin mutant y221g 24 d1thqa_ not modelled 11.8 45 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane enzyme PagP 25 d1sg7a1 not modelled 11.6 47 Fold:ChaB-like Superfamily:ChaB-like Family:ChaB-like 26 c1sg7A_ not modelled 11.6 47 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab 27 d1r4xa2 not modelled 11.6 24 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Coatomer appendage domain 28 c2xgtB_ not modelled 10.9 29 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 29 c3oakC_ not modelled 10.8 86 PDB header:transcription Chain: C: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex 30 d2ftxb1 not modelled 10.3 28 Fold:Kinetochore globular domain-like Superfamily:Kinetochore globular domain Family:Spc24-like 31 c2fv4B_ not modelled 10.2 28 PDB header:structural protein, protein binding Chain: B: PDB Molecule:hypothetical 24.6 kda protein in ilv2-ade17 PDBTitle: nmr solution structure of the yeast kinetochore spc24/spc252 globular domain 32 c2vxdA_ not modelled 9.8 11 PDB header:nuclear protein Chain: A: PDB Molecule:nucleophosmin; PDBTitle: the structure of the c-terminal domain of nucleophosmin 33 c1ykuB_ not modelled 9.8 19 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog 34 c2rodB_ not modelled 9.6 53 PDB header:apoptosis Chain: B: PDB Molecule:noxa; PDBTitle: solution structure of mcl-1 complexed with noxaa 35 c1e22A_ not modelled 9.5 21 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 36 d2cura2 not modelled 9.5 100 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 37 c2yfvC_ not modelled 9.3 33 PDB header:cell cycle Chain: C: PDB Molecule:scm3; PDBTitle: the heterotrimeric complex of kluyveromyces lactis scm3, cse4 and h4 38 c1p5kA_ not modelled 9.3 64 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution ser to leu11 modification in sds-d252 micelles 39 c2jwnB_ not modelled 8.4 34 PDB header:rna binding protein Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b; PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2 40 c2npiB_ not modelled 8.2 26 PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex 41 c3nztA_ not modelled 8.1 27 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: 2.0 angstrom crystal structure of glutamate--cysteine ligase (gsha)2 ftom francisella tularensis in complex with amp 42 d2d8za1 not modelled 7.7 67 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 43 c2lc0A_ not modelled 7.6 18 PDB header:protein binding Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: rv0020c_nter structure 44 c3bjuB_ not modelled 7.6 24 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 45 d1o57a1 not modelled 7.6 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 46 c1sfcD_ not modelled 7.5 20 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 47 c2v4oB_ not modelled 6.9 46 PDB header:hydrolase Chain: B: PDB Molecule:multifunctional protein sur e; PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form 48 d2i9fa1 not modelled 6.9 44 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 49 c2gloA_ not modelled 6.9 32 PDB header:transcription/dna Chain: A: PDB Molecule:brinker cg9653-pa; PDBTitle: solution structure of the brinker dna binding domain in2 complex with the omb enhancer 50 c2yv5A_ not modelled 6.9 16 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 51 c3c2vA_ not modelled 6.7 20 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of the quinolinate phosphoribosyl2 transferase (bna6) from saccharomyces cerevisiae complexed3 with prpp and the inhibitor phthalate 52 c2f0cC_ not modelled 6.7 28 PDB header:virus/viral protein Chain: C: PDB Molecule:phage tp901-1 orf49 (bpp); PDBTitle: structure of the receptor binding protein (orf49, bbp) from lactophage2 tp901-1 53 c1wydB_ not modelled 6.6 23 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 54 c1aq5C_ not modelled 6.4 58 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 55 c1x55A_ not modelled 6.4 21 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 56 c3e9hB_ not modelled 6.3 18 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 57 d2enga_ not modelled 6.2 38 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:Eng V-like 58 d1eova2 not modelled 6.1 18 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 59 d1f0la3 not modelled 6.0 25 Fold:Toxins' membrane translocation domains Superfamily:Diphtheria toxin, middle domain Family:Diphtheria toxin, middle domain 60 d2duca1 not modelled 5.8 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 61 c2i8bB_ not modelled 5.8 30 PDB header:viral protein Chain: B: PDB Molecule:minor nucleoprotein vp30; PDBTitle: crystal structure of the c-terminal domain of ebola virus vp30 62 d2al6a2 not modelled 5.7 83 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 63 d2cs7a1 not modelled 5.6 24 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 64 c1p5lA_ not modelled 5.6 64 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution phe5 to ser modification in sds-d252 micelles 65 c1p0gA_ not modelled 5.4 64 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: structure of antimicrobial peptide, hp (2-20) and its2 analogues derived from helicobacter pylori, as determined3 by 1h nmr spectroscopy 66 c2e6gI_ not modelled 5.4 31 PDB header:hydrolase Chain: I: PDB Molecule:5'-nucleotidase sure; PDBTitle: crystal structure of the stationary phase survival protein sure from2 thermus thermophilus hb8 in complex with phosphate 67 c3pmdA_ not modelled 5.2 24 PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis 68 d2saka_ not modelled 5.1 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0