16/01/2012 09:47:38 : INFO  : Run start: Mon Jan 16 09:47:36 GMT 2012
16/01/2012 09:47:47 : INFO  : Initialised job
16/01/2012 09:47:50 : INFO  : Renaming log file 'phyre2_20120116_094735.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/20c5f8f862434c9d/phyre_20120116_094735.log'
16/01/2012 09:47:52 : INFO  : Initialised job:
Sequence
>batch____
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEED
TPCLECESLEKEFEEMQNDNDLSLFMRILRTNDTQIYSGVSGGITYTIQYVRDIDIVRVS
LPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFDDENISVQPERINTPGISDLD
SDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAILVLKQHDYSWALVSYKMQKEVYN
EFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFID
SCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLVVLSDSICSLFIVNSNVAS
ISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI

16/01/2012 09:47:53 : INFO  : Checked sequence
16/01/2012 09:47:59 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 09:48:01 : INFO  : PSI-BLAST 3 iterations
16/01/2012 09:49:18 : INFO  : PSI-BLAST 5 iterations
16/01/2012 09:50:40 : INFO  : Finished PSI-BLAST
16/01/2012 09:50:44 : INFO  : Running Buildali to generate a3m file
16/01/2012 09:54:22 : INFO  : Converting to HMM
16/01/2012 09:54:25 : INFO  : Calibrating HMM
16/01/2012 09:54:47 : INFO  : Searching HMM database
16/01/2012 10:02:36 : INFO  : Finished buildali
16/01/2012 10:02:39 : INFO  : Predicting secondary structure
16/01/2012 10:02:56 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 10:02:59 : INFO  : Predicting Disordered regions
16/01/2012 10:03:06 : INFO  : Predicted Disorder (Disopred)
16/01/2012 10:03:09 : INFO  : Running memsat_svm check
16/01/2012 10:10:40 : INFO  : Globular protein
16/01/2012 10:10:43 : INFO  : Predicted Transmembrane (memsat_svm) ID '20c5f8f862434c9d'
16/01/2012 10:10:46 : INFO  : Initialising fold library search
16/01/2012 10:10:52 : INFO  : Initialised search input
16/01/2012 10:10:57 : INFO  : Building Ensemble models
16/01/2012 10:11:03 : INFO  : Building hh.c3pfyA_.model.1.pdb
16/01/2012 10:11:32 : INFO  : Building hh.d2d32a1.model.2.pdb
16/01/2012 10:11:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/20c5f8f862434c9d/hh.d2d32a1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/20c5f8f862434c9d/d2d32a1.6.pdb
16/01/2012 10:12:04 : INFO  : Building c3pfyA_.1.pdb
16/01/2012 10:12:31 : INFO  : Building c2zfyA_.2.pdb
16/01/2012 10:12:59 : INFO  : Building c3c0rC_.3.pdb
16/01/2012 10:13:27 : INFO  : Building c3pt2A_.4.pdb
16/01/2012 10:13:57 : INFO  : Building d1tffa_.5.pdb
16/01/2012 10:14:25 : INFO  : Building d2d32a1.6.pdb
16/01/2012 10:14:53 : INFO  : Building c3i7fA_.7.pdb
16/01/2012 10:15:22 : INFO  : Building c1u9pA_.8.pdb
16/01/2012 10:15:48 : INFO  : Building c1asyA_.9.pdb
16/01/2012 10:16:17 : INFO  : Building c3m4qA_.10.pdb
16/01/2012 10:16:44 : INFO  : Building d1mnta_.11.pdb
16/01/2012 10:17:14 : INFO  : Building c1b8aB_.12.pdb
16/01/2012 10:17:40 : INFO  : Building c3ln7A_.13.pdb
16/01/2012 10:18:06 : INFO  : Building d1ppjw_.14.pdb
16/01/2012 10:18:33 : INFO  : Building d1ppjj_.15.pdb
16/01/2012 10:18:59 : INFO  : Building d2outa1.16.pdb
16/01/2012 10:19:24 : INFO  : Building c3ln6A_.17.pdb
16/01/2012 10:19:51 : INFO  : Building d2gp4a1.18.pdb
16/01/2012 10:20:15 : INFO  : Building c2vfjA_.19.pdb
16/01/2012 10:20:41 : INFO  : Building d1y1oa_.20.pdb
16/01/2012 10:22:05 : INFO  : Finished HH model building
16/01/2012 10:22:08 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 10:23:58 : INFO  : html domain output complete ID '20c5f8f862434c9d'
16/01/2012 10:32:16 : INFO  : Run end  : Mon Jan 16 10:32:14 GMT 2012
