Phyre 2 alignment of P36661 with c1nh2D_

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Job Description | P36661
Confidence | 4.01% | Date | Thu Jan 5 11:53:33 GMT 2012
Rank | 93 | Aligned Residues | 30
% Identity | 33% | Template | c1nh2D_
PDB info | PDB header:transcription/dna | Chain: D: PDB Molecule:transcription initiation factor iia small chain; | PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
Resolution | 1.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 67 | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |  |  | . | . | . | . | . | . | 90 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | E | S | L | E | K | E | F | E | E | M | Q | N | D | N | D | L | S | . | . | L | F | M | R | I | L | R | T | N | D | T | Q | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | S | L | V | D | A | L | D | T | L | I | S | D | G | R | I | E | A | S | L | A | M | R | V | L | E | T | F | D | K | V | V
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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