Phyre 2 Results for P36661

Email | l.a.kelley@imperial.ac.uk
Description | P36661
Date | Thu Jan 5 11:53:33 GMT 2012
Unique Job ID | 20c5f8f862434c9d

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3pfyA_ |
|  | 93.3 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5
2 | c2zfyA_ |
|  | 80.8 | 31 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otub1; PDBTitle: crystal structure of human otubain 1
3 | c3c0rC_ |
|  | 80.5 | 47 | PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin
4 | c3pt2A_ |
|  | 72.8 | 27 | PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin
5 | d1tffa_ |
|  | 69.4 | 31 | Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
6 | d2d32a1 |
|  | 51.7 | 31 | Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamate-cysteine ligase
7 | c3i7fA_ |
|  | 41.2 | 19 | PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica
8 | c1u9pA_ |
|  | 39.3 | 25 | PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc
9 | c1asyA_ |
|  | 36.1 | 19 | PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp
10 | c3m4qA_ |
|  | 35.9 | 19 | PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs)
11 | d1mnta_ |
|  | 27.8 | 27 | Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors
12 | c1b8aB_ |
|  | 23.7 | 15 | PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase
13 | c3ln7A_ |
|  | 23.4 | 32 | PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida
14 | d1ppjw_ |
|  | 20.5 | 60 | Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
15 | d1ppjj_ |
|  | 19.0 | 60 | Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
16 | d2outa1 |
|  | 17.3 | 43 | Fold:LEM/SAP HeH motif Superfamily:Rho N-terminal domain-like Family:YqbF C-terminal domain-like
17 | c3ln6A_ |
|  | 16.6 | 33 | PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae
18 | d2gp4a1 |
|  | 16.1 | 38 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like
19 | c2vfjA_ |
|  | 16.1 | 46 | PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor; PDBTitle: structure of the a20 ovarian tumour (otu) domain
20 | d1y1oa_ |
|  | 16.0 | 46 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:RecU-like
21 | c1y1oC_ |
| not modelled | 16.0 | 46 | PDB header:recombination Chain: C: PDB Molecule:penicillin-binding protein-related factor a; PDBTitle: x-ray crystal structure of penicillin-binding protein-2 related factor a from bacillus stearothermophilus
22 | c3dkbA_ |
| not modelled | 15.9 | 46 | PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3; PDBTitle: crystal structure of a20, 2.5 angstrom
23 | c3c0mB_ |
| not modelled | 13.6 | 28 | PDB header:toxin Chain: B: PDB Molecule:aerolysin; PDBTitle: crystal structure of the proaerolysin mutant y221g
24 | d1thqa_ |
| not modelled | 11.8 | 45 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane enzyme PagP
25 | d1sg7a1 |
| not modelled | 11.6 | 47 | Fold:ChaB-like Superfamily:ChaB-like Family:ChaB-like
26 | c1sg7A_ |
| not modelled | 11.6 | 47 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab
27 | d1r4xa2 |
| not modelled | 11.6 | 24 | Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Coatomer appendage domain
28 | c2xgtB_ |
| not modelled | 10.9 | 29 | PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate
29 | c3oakC_ |
| not modelled | 10.8 | 86 | PDB header:transcription Chain: C: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex
30 | d2ftxb1 |
| not modelled | 10.3 | 28 | Fold:Kinetochore globular domain-like Superfamily:Kinetochore globular domain Family:Spc24-like
31 | c2fv4B_ |
| not modelled | 10.2 | 28 | PDB header:structural protein, protein binding Chain: B: PDB Molecule:hypothetical 24.6 kda protein in ilv2-ade17 PDBTitle: nmr solution structure of the yeast kinetochore spc24/spc252 globular domain
32 | c2vxdA_ |
| not modelled | 9.8 | 11 | PDB header:nuclear protein Chain: A: PDB Molecule:nucleophosmin; PDBTitle: the structure of the c-terminal domain of nucleophosmin
33 | c1ykuB_ |
| not modelled | 9.8 | 19 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog
34 | c2rodB_ |
| not modelled | 9.6 | 53 | PDB header:apoptosis Chain: B: PDB Molecule:noxa; PDBTitle: solution structure of mcl-1 complexed with noxaa
35 | c1e22A_ |
| not modelled | 9.5 | 21 | PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp
36 | d2cura2 |
| not modelled | 9.5 | 100 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
37 | c2yfvC_ |
| not modelled | 9.3 | 33 | PDB header:cell cycle Chain: C: PDB Molecule:scm3; PDBTitle: the heterotrimeric complex of kluyveromyces lactis scm3, cse4 and h4
38 | c1p5kA_ |
| not modelled | 9.3 | 64 | PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution ser to leu11 modification in sds-d252 micelles
39 | c2jwnB_ |
| not modelled | 8.4 | 34 | PDB header:rna binding protein Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b; PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2
40 | c2npiB_ |
| not modelled | 8.2 | 26 | PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex
41 | c3nztA_ |
| not modelled | 8.1 | 27 | PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: 2.0 angstrom crystal structure of glutamate--cysteine ligase (gsha)2 ftom francisella tularensis in complex with amp
42 | d2d8za1 |
| not modelled | 7.7 | 67 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
43 | c2lc0A_ |
| not modelled | 7.6 | 18 | PDB header:protein binding Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: rv0020c_nter structure
44 | c3bjuB_ |
| not modelled | 7.6 | 24 | PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase
45 | d1o57a1 |
| not modelled | 7.6 | 27 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR
46 | c1sfcD_ |
| not modelled | 7.5 | 20 | PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex
47 | c2v4oB_ |
| not modelled | 6.9 | 46 | PDB header:hydrolase Chain: B: PDB Molecule:multifunctional protein sur e; PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
48 | d2i9fa1 |
| not modelled | 6.9 | 44 | Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein
49 | c2gloA_ |
| not modelled | 6.9 | 32 | PDB header:transcription/dna Chain: A: PDB Molecule:brinker cg9653-pa; PDBTitle: solution structure of the brinker dna binding domain in2 complex with the omb enhancer
50 | c2yv5A_ |
| not modelled | 6.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus
51 | c3c2vA_ |
| not modelled | 6.7 | 20 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of the quinolinate phosphoribosyl2 transferase (bna6) from saccharomyces cerevisiae complexed3 with prpp and the inhibitor phthalate
52 | c2f0cC_ |
| not modelled | 6.7 | 28 | PDB header:virus/viral protein Chain: C: PDB Molecule:phage tp901-1 orf49 (bpp); PDBTitle: structure of the receptor binding protein (orf49, bbp) from lactophage2 tp901-1
53 | c1wydB_ |
| not modelled | 6.6 | 23 | PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii
54 | c1aq5C_ |
| not modelled | 6.4 | 58 | PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures
55 | c1x55A_ |
| not modelled | 6.4 | 21 | PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue
56 | c3e9hB_ |
| not modelled | 6.3 | 18 | PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine
57 | d2enga_ |
| not modelled | 6.2 | 38 | Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:Eng V-like
58 | d1eova2 |
| not modelled | 6.1 | 18 | Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
59 | d1f0la3 |
| not modelled | 6.0 | 25 | Fold:Toxins' membrane translocation domains Superfamily:Diphtheria toxin, middle domain Family:Diphtheria toxin, middle domain
60 | d2duca1 |
| not modelled | 5.8 | 26 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold
61 | c2i8bB_ |
| not modelled | 5.8 | 30 | PDB header:viral protein Chain: B: PDB Molecule:minor nucleoprotein vp30; PDBTitle: crystal structure of the c-terminal domain of ebola virus vp30
62 | d2al6a2 |
| not modelled | 5.7 | 83 | Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM
63 | d2cs7a1 |
| not modelled | 5.6 | 24 | Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like
64 | c1p5lA_ |
| not modelled | 5.6 | 64 | PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution phe5 to ser modification in sds-d252 micelles
65 | c1p0gA_ |
| not modelled | 5.4 | 64 | PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: structure of antimicrobial peptide, hp (2-20) and its2 analogues derived from helicobacter pylori, as determined3 by 1h nmr spectroscopy
66 | c2e6gI_ |
| not modelled | 5.4 | 31 | PDB header:hydrolase Chain: I: PDB Molecule:5'-nucleotidase sure; PDBTitle: crystal structure of the stationary phase survival protein sure from2 thermus thermophilus hb8 in complex with phosphate
67 | c3pmdA_ |
| not modelled | 5.2 | 24 | PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis
68 | d2saka_ |
| not modelled | 5.1 | 21 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase