Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	E	I	Q	R	L	L	T	E	T	I	E	S	L	N	T	R	E	K	R	D	N	K	P	R	F	S	I	S	F	I	R	K	H	P	G	L	F	I	G	M	Y	V	A	F	F	A	T	L	A	V	M	L	Q	S	E	T	L	S
Secondary structure
SS confidence
Disorder		?	?																		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	S	V	W	L	L	V	V	L	F	I	L	L	N	G	F	F	F	F	D	V	Y	P	R	Y	R	Y	E	D	I	D	V	L	D	F	R	V	C	Y	N	G	E	W	Y	N	T	R	F	V	P	A	A	L	V	E	A	I	L	N	S
Secondary structure
SS confidence
Disorder																																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Sequence		P	R	V	A	D	V	H	K	E	Q	L	Q	K	M	I	V	R	K	G	E	L	S	F	Y	D	I	F	T	L	A	R	A	E	S	T	S
Secondary structure
SS confidence
Disorder		?	?	?	?																										?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1df6 chain A Region: 96 - 101 Aligned: 6 Modelled: 6 Confidence: 61.5% Identity: 100% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Cyclotides Family: Cycloviolacin Phyre2 PDB 1df6 chain A Region: 96 - 101 Aligned: 6 Modelled: 6 Confidence: 61.5% Identity: 100% PDB header:plant protein Chain: A: PDB Molecule:cycloviolacin o1; PDBTitle: 1h nmr solution structure of cycloviolacin o1 Phyre2 PDB 2bjc chain A domain 1 Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 48.6% Identity: 19% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 1lcd chain A Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 48.5% Identity: 16% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 1qpz chain A domain 1 Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 47.0% Identity: 19% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 2l8n chain A Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 45.2% Identity: 23% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna Phyre2 PDB 1nbj chain A Region: 96 - 101 Aligned: 6 Modelled: 6 Confidence: 43.9% Identity: 100% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Cyclotides Family: Cycloviolacin Phyre2 PDB 1nbj chain A Region: 96 - 101 Aligned: 6 Modelled: 6 Confidence: 43.9% Identity: 100% PDB header:plant protein Chain: A: PDB Molecule:cycloviolacin o1; PDBTitle: high-resolution solution structure of cycloviolacin o1 Phyre2 PDB 2c3h chain C Region: 94 - 107 Aligned: 14 Modelled: 14 Confidence: 41.0% Identity: 36% PDB header:carbohydrate-binding module Chain: C: PDB Molecule:alpha-amylase g-6; PDBTitle: structure of cbm26 from bacillus halodurans amylase in2 complex with maltose Phyre2 PDB 1uxc chain A Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 38.6% Identity: 19% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 2b5k chain A Region: 95 - 105 Aligned: 11 Modelled: 11 Confidence: 37.8% Identity: 55% PDB header:antimicrobial protein Chain: A: PDB Molecule:polyphemusin-1; PDBTitle: pv5 nmr solution structure in dpc micelles Phyre2 PDB 2phc chain B domain 1 Region: 93 - 103 Aligned: 11 Modelled: 11 Confidence: 36.4% Identity: 36% Fold: Cyclophilin-like Superfamily: Cyclophilin-like Family: PH0987 C-terminal domain-like Phyre2 PDB 2lcv chain A Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 31.9% Identity: 23% PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation Phyre2 PDB 1efa chain A domain 1 Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 29.6% Identity: 16% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 3bd1 chain B Region: 109 - 146 Aligned: 36 Modelled: 38 Confidence: 24.4% Identity: 14% PDB header:transcription Chain: B: PDB Molecule:cro protein; PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1 Phyre2 PDB 2zp2 chain B Region: 92 - 103 Aligned: 12 Modelled: 12 Confidence: 22.1% Identity: 42% PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis Phyre2 PDB 2vt1 chain A Region: 106 - 123 Aligned: 18 Modelled: 18 Confidence: 22.0% Identity: 22% PDB header:membrane protein Chain: A: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system Phyre2 PDB 3h9x chain B Region: 78 - 123 Aligned: 46 Modelled: 46 Confidence: 20.8% Identity: 28% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein pspto_3016; PDBTitle: crystal structure of the pspto_3016 protein from2 pseudomonas syringae, northeast structural genomics3 consortium target psr293 Phyre2 PDB 1uxd chain A Region: 109 - 139 Aligned: 31 Modelled: 31 Confidence: 19.6% Identity: 19% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 3hgt chain A Region: 1 - 38 Aligned: 38 Modelled: 38 Confidence: 18.5% Identity: 29% PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex Phyre2 1 d1df6a_ 2 c1df6A_ 3 d2bjca1 4 d1lcda_ 5 d1qpza1 6 c2l8nA_ 7 d1nbja_ 8 c1nbjA_ 9 c2c3hC_ 10 d1uxca_ 11 c2b5kA_ 12 d2phcb1 13 c2lcvA_ 14 d1efaa1 15 c3bd1B_ 16 c2zp2B_ 17 c2vt1A_ 18 c3h9xB_ 19 d1uxda_ 20 c3hgtA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1df6a_ 61.5 100 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Cycloviolacin 2 c1df6A_ 61.5 100 PDB header:plant protein Chain: A: PDB Molecule:cycloviolacin o1; PDBTitle: 1h nmr solution structure of cycloviolacin o1 3 d2bjca1 48.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 4 d1lcda_ 48.5 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 5 d1qpza1 47.0 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 6 c2l8nA_ 45.2 23 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 7 d1nbja_ 43.9 100 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Cycloviolacin 8 c1nbjA_ 43.9 100 PDB header:plant protein Chain: A: PDB Molecule:cycloviolacin o1; PDBTitle: high-resolution solution structure of cycloviolacin o1 9 c2c3hC_ 41.0 36 PDB header:carbohydrate-binding module Chain: C: PDB Molecule:alpha-amylase g-6; PDBTitle: structure of cbm26 from bacillus halodurans amylase in2 complex with maltose 10 d1uxca_ 38.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 11 c2b5kA_ 37.8 55 PDB header:antimicrobial protein Chain: A: PDB Molecule:polyphemusin-1; PDBTitle: pv5 nmr solution structure in dpc micelles 12 d2phcb1 36.4 36 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 13 c2lcvA_ 31.9 23 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 14 d1efaa1 29.6 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 15 c3bd1B_ 24.4 14 PDB header:transcription Chain: B: PDB Molecule:cro protein; PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1 16 c2zp2B_ 22.1 42 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 17 c2vt1A_ 22.0 22 PDB header:membrane protein Chain: A: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system 18 c3h9xB_ 20.8 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein pspto_3016; PDBTitle: crystal structure of the pspto_3016 protein from2 pseudomonas syringae, northeast structural genomics3 consortium target psr293 19 d1uxda_ 19.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 20 c3hgtA_ 18.5 29 PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex 21 c2phcB_ not modelled 16.6 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 22 d2ptda_ not modelled 16.4 10 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Bacterial PLC 23 d2duca1 not modelled 16.2 37 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 24 d2hsga1 not modelled 16.0 29 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 25 d2elca1 not modelled 15.5 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 26 c2rp4C_ not modelled 15.5 20 PDB header:transcription Chain: C: PDB Molecule:transcription factor p53; PDBTitle: solution structure of the oligomerization domain in dmp53 27 d1vb8a_ not modelled 15.0 100 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Cycloviolacin 28 c1vb8A_ not modelled 15.0 100 PDB header:plant protein Chain: A: PDB Molecule:viola hederacea root peptide 1; PDBTitle: solution structure of vhr1, the first cyclotide from root2 tissue 29 c1bdhA_ not modelled 14.4 19 PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex 30 c1bcrA_ not modelled 13.2 15 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:serine carboxypeptidase ii; PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature 31 d1us7b_ not modelled 12.9 8 Fold:Hsp90 co-chaperone CDC37 Superfamily:Hsp90 co-chaperone CDC37 Family:Hsp90 co-chaperone CDC37 32 c1us7B_ not modelled 12.9 8 PDB header:chaperone Chain: B: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: complex of hsp90 and p50 33 c1t3jA_ not modelled 12.0 18 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 34 c3odnA_ not modelled 11.7 25 PDB header:membrane protein Chain: A: PDB Molecule:dally-like protein; PDBTitle: the crystal structure of drosophila dally-like protein core domain 35 c2l27A_ not modelled 11.3 50 PDB header:membrane protein, peptide binding protei Chain: A: PDB Molecule:seven transmembrane helix receptor; PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist 36 c3e90B_ not modelled 11.2 63 PDB header:hydrolase Chain: B: PDB Molecule:ns3 protease; PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h 37 d2ijob1 not modelled 11.0 63 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 38 d2fp7b1 not modelled 10.9 63 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 39 d1xp8a2 not modelled 10.9 16 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 40 c3n7sB_ not modelled 10.7 27 PDB header:membrane protein Chain: B: PDB Molecule:calcitonin gene-related peptide type 1 receptor; PDBTitle: crystal structure of the ectodomain complex of the cgrp receptor, a2 class-b gpcr, reveals the site of drug antagonism 41 d2ok5a4 not modelled 10.6 50 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 42 c3q7tB_ not modelled 10.5 20 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein; PDBTitle: 2.15a resolution structure (i41 form) of the chxr receiver domain from2 chlamydia trachomatis 43 d1f37b_ not modelled 10.2 30 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin 44 c3d23A_ not modelled 10.1 26 PDB header:hydrolase Chain: A: PDB Molecule:3c-like proteinase; PDBTitle: main protease of hcov-hku1 45 c2q6fB_ not modelled 9.7 26 PDB header:hydrolase Chain: B: PDB Molecule:infectious bronchitis virus (ibv) main protease; PDBTitle: crystal structure of infectious bronchitis virus (ibv) main2 protease in complex with a michael acceptor inhibitor n3 46 d1lvoa_ not modelled 9.6 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 47 d2vgna2 not modelled 9.4 17 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:ERF1/Dom34 middle domain-like 48 c2re3A_ not modelled 9.3 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 49 d1q0qa1 not modelled 9.2 31 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 50 d1hfia_ not modelled 9.1 50 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 51 d1mo6a2 not modelled 8.9 14 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 52 d2fomb1 not modelled 8.8 38 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 53 c2d56A_ not modelled 8.6 57 PDB header:antibiotic Chain: A: PDB Molecule:asabf; PDBTitle: solution structure of asabf, antibacterial peptide isolated2 from a nematode, ascaris suum 54 d1dgna_ not modelled 8.6 11 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 55 d1u94a2 not modelled 8.5 17 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 56 d1p9sa_ not modelled 8.4 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 57 d1v86a_ not modelled 8.3 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 58 c1zvvA_ not modelled 8.3 29 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 59 c2auvA_ not modelled 8.3 29 PDB header:oxidoreductase Chain: A: PDB Molecule:potential nad-reducing hydrogenase subunit; PDBTitle: solution structure of hndac : a thioredoxin-like [2fe-2s]2 ferredoxin involved in the nadp-reducing hydrogenase3 complex 60 d1gx5a_ not modelled 8.2 31 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 61 d1r0ka1 not modelled 8.1 23 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 62 d2ffga1 not modelled 8.0 38 Fold:YkuJ-like Superfamily:YkuJ-like Family:YkuJ-like 63 d1mdwa_ not modelled 7.9 21 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Calpain large subunit, catalytic domain (domain II) 64 c3dl8D_ not modelled 7.8 26 PDB header:protein transport Chain: D: PDB Molecule:sece; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 65 d1ubea2 not modelled 7.7 14 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 66 c2fgtA_ not modelled 7.7 29 PDB header:signaling protein Chain: A: PDB Molecule:two-component system yycf/yycg regulatory PDBTitle: crystal structure of yych from bacillus subtilis 67 c3lkwA_ not modelled 7.4 38 PDB header:viral protein,hydrolase Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active2 site mutant 68 d2fbea1 not modelled 7.4 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain 69 c1ct9D_ not modelled 7.4 30 PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli 70 d1nb4a_ not modelled 7.3 31 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 71 d1befa_ not modelled 7.3 38 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 72 d1kgda_ not modelled 7.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 73 c2wl1A_ not modelled 7.1 44 PDB header:signaling protein Chain: A: PDB Molecule:pyrin; PDBTitle: pyrin pryspry domain 74 d1jgta2 not modelled 7.0 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 75 d1mj4a_ not modelled 6.8 44 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 76 d2iwgb1 not modelled 6.7 56 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain 77 d1v4sa2 not modelled 6.7 28 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 78 c3rkoA_ not modelled 6.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase subunit a; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 79 d1mhqa_ not modelled 6.5 8 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 80 c3kjxD_ not modelled 6.3 19 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi 81 d1u34a_ not modelled 6.3 63 Fold:Hormone receptor domain Superfamily:Hormone receptor domain Family:Hormone receptor domain 82 c3ba3A_ not modelled 6.2 12 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein; PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution 83 c3fotA_ not modelled 6.2 24 PDB header:transferase Chain: A: PDB Molecule:15-o-acetyltransferase; PDBTitle: structural and functional characterization of tri3 trichothecene 15-o-2 acetyltransferase from fusarium sporotrichioides 84 c1q15A_ not modelled 6.2 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase 85 c3cm8B_ not modelled 6.0 30 PDB header:rna binding protein/transferase Chain: B: PDB Molecule:peptide from rna-directed rna polymerase PDBTitle: a rna polymerase subunit structure from virus 86 c2k50A_ not modelled 6.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 87 d1kxoa_ not modelled 6.0 8 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 88 c2bsjB_ not modelled 6.0 50 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein syct; PDBTitle: native crystal structure of the type iii secretion2 chaperone syct from yersinia enterocolitica 89 d3c2wa2 not modelled 5.9 17 Fold:Profilin-like Superfamily:GAF domain-like Family:Phytochrome-specific domain 90 c3kb5A_ not modelled 5.8 67 PDB header:membrane protein Chain: A: PDB Molecule:tripartite motif-containing protein 72; PDBTitle: pry-spry domain of human trim72 91 d1q15a2 not modelled 5.7 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 92 c3kzgB_ not modelled 5.7 8 PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila 93 c1htrP_ not modelled 5.6 38 PDB header:aspartyl protease Chain: P: PDB Molecule:progastricsin (pro segment); PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution 94 d1scjb_ not modelled 5.6 16 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 95 c1gxsC_ not modelled 5.5 17 PDB header:lyase Chain: C: PDB Molecule:p-(s)-hydroxymandelonitrile lyase chain a; PDBTitle: crystal structure of hydroxynitrile lyase from sorghum2 bicolor in complex with inhibitor benzoic acid: a novel3 cyanogenic enzyme 96 c3jsrA_ not modelled 5.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:all0216 protein; PDBTitle: x-ray structure of all0216 protein from nostoc sp. pcc 7120 at the2 resolution 1.8a. northeast structural genomics consortium target3 nsr236 97 c1m1zB_ not modelled 5.5 44 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 98 c3fcnA_ not modelled 5.4 36 PDB header:unknown function Chain: A: PDB Molecule:an alpha-helical protein of unknown function (pfam01724); PDBTitle: crystal structure of an alpha-helical protein of unknown function2 (rru_a3208) from rhodospirillum rubrum atcc 11170 at 1.45 a3 resolution 99 d1oqja_ not modelled 5.1 14 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0