Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	I	R	R	K	N	R	L	W	I	A	C	A	V	L	A	G	L	A	L	T	I	G	L	V	L	Y	A	L	R	S	N	I	D	L	F	Y	T	P	G	E	I	L	Y	G	K	R	E	T	Q	Q	M	P	E	V	G	Q	R	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																						?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	V	G	G	M	V	M	P	G	S	V	Q	R	D	P	N	S	L	K	V	T	F	T	I	Y	D	A	E	G	S	V	D	V	S	Y	E	G	I	L	P	D	L	F	R	E	G	Q	G	V	V	V	Q	G	E	L	E	K	G	N	H
Secondary structure
SS confidence
Disorder																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Sequence		I	L	A	K	E	V	L	A	K	H	D	E	N	Y	T	P	P	E	V	E	K	A	M	E	A	N	H	R	R	P	A	S	V	Y	K	D	P	A	S
Secondary structure
SS confidence
Disorder																		?									?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sr3 chain A Region: 30 - 143 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 100% Fold: OB-fold Superfamily: Heme chaperone CcmE Family: Heme chaperone CcmE Phyre2 PDB 1j6q chain A Region: 32 - 130 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 59% Fold: OB-fold Superfamily: Heme chaperone CcmE Family: Heme chaperone CcmE Phyre2 PDB 1j6q chain A Region: 32 - 130 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 59% PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme Phyre2 PDB 2kct chain A Region: 53 - 131 Aligned: 79 Modelled: 79 Confidence: 99.9% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccme; PDBTitle: solution nmr structure of the ob-fold domain of heme2 chaperone ccme from desulfovibrio vulgaris. northeast3 structural genomics target dvr115g. Phyre2 PDB 3e0j chain G Region: 53 - 127 Aligned: 72 Modelled: 75 Confidence: 92.6% Identity: 11% PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta Phyre2 PDB 3flo chain G Region: 55 - 127 Aligned: 73 Modelled: 73 Confidence: 90.6% Identity: 16% PDB header:transferase Chain: G: PDB Molecule:dna polymerase alpha subunit b; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit Phyre2 PDB 1asy chain A Region: 52 - 134 Aligned: 79 Modelled: 83 Confidence: 86.1% Identity: 11% PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Phyre2 PDB 1eqr chain C Region: 56 - 136 Aligned: 76 Modelled: 81 Confidence: 85.0% Identity: 26% PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli Phyre2 PDB 2pi2 chain A Region: 58 - 115 Aligned: 53 Modelled: 58 Confidence: 83.4% Identity: 17% PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 Phyre2 PDB 1c0a chain A domain 1 Region: 53 - 115 Aligned: 59 Modelled: 63 Confidence: 83.0% Identity: 25% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 1wyd chain B Region: 53 - 134 Aligned: 77 Modelled: 82 Confidence: 82.2% Identity: 16% PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii Phyre2 PDB 2pi2 chain A domain 1 Region: 58 - 115 Aligned: 53 Modelled: 58 Confidence: 82.1% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 PDB 1b8a chain A domain 1 Region: 53 - 132 Aligned: 76 Modelled: 80 Confidence: 81.3% Identity: 22% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 3i7f chain A Region: 53 - 137 Aligned: 80 Modelled: 85 Confidence: 81.1% Identity: 13% PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Phyre2 PDB 1l0w chain A domain 1 Region: 53 - 115 Aligned: 58 Modelled: 63 Confidence: 80.6% Identity: 22% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 PDB 3m4q chain A Region: 55 - 132 Aligned: 74 Modelled: 78 Confidence: 80.3% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) Phyre2 PDB 3kf6 chain A Region: 58 - 126 Aligned: 65 Modelled: 69 Confidence: 80.1% Identity: 17% PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex Phyre2 PDB 3bju chain B Region: 53 - 138 Aligned: 82 Modelled: 86 Confidence: 72.6% Identity: 18% PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Phyre2 PDB 1c9o chain A Region: 67 - 128 Aligned: 61 Modelled: 62 Confidence: 72.3% Identity: 23% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1n9w chain A domain 1 Region: 56 - 137 Aligned: 76 Modelled: 82 Confidence: 71.0% Identity: 25% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Anticodon-binding domain Phyre2 1 d1sr3a_ 2 d1j6qa_ 3 c1j6qA_ 4 c2kctA_ 5 c3e0jG_ 6 c3floG_ 7 c1asyA_ 8 c1eqrC_ 9 c2pi2A_ 10 d1c0aa1 11 c1wydB_ 12 d2pi2a1 13 d1b8aa1 14 c3i7fA_ 15 d1l0wa1 16 c3m4qA_ 17 c3kf6A_ 18 c3bjuB_ 19 d1c9oa_ 20 d1n9wa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1sr3a_ 100.0 100 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 2 d1j6qa_ 100.0 59 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 3 c1j6qA_ 100.0 59 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 4 c2kctA_ 99.9 25 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccme; PDBTitle: solution nmr structure of the ob-fold domain of heme2 chaperone ccme from desulfovibrio vulgaris. northeast3 structural genomics target dvr115g. 5 c3e0jG_ 92.6 11 PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 6 c3floG_ 90.6 16 PDB header:transferase Chain: G: PDB Molecule:dna polymerase alpha subunit b; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 7 c1asyA_ 86.1 11 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 8 c1eqrC_ 85.0 26 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 9 c2pi2A_ 83.4 17 PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 10 d1c0aa1 83.0 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 11 c1wydB_ 82.2 16 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 12 d2pi2a1 82.1 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 13 d1b8aa1 81.3 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 14 c3i7fA_ 81.1 13 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 15 d1l0wa1 80.6 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 16 c3m4qA_ 80.3 18 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 17 c3kf6A_ 80.1 17 PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 18 c3bjuB_ 72.6 18 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 19 d1c9oa_ 72.3 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 d1n9wa1 71.0 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 21 d1gm5a2 not modelled 69.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 22 c2xgtB_ not modelled 65.1 21 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 23 c3e0dA_ not modelled 63.2 30 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 24 c3e0eA_ not modelled 59.7 18 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 25 c1efwA_ not modelled 57.0 21 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 26 c1b8aB_ not modelled 56.8 24 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 27 c1z9fA_ not modelled 56.7 21 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution 28 d1eova1 not modelled 55.2 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 29 c1x55A_ not modelled 43.9 24 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 30 d1bbua1 not modelled 43.7 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 31 d2es2a1 not modelled 40.4 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 32 d1o7ia_ not modelled 40.0 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 33 d2pi2e1 not modelled 40.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 34 c1n9wA_ not modelled 38.9 25 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 35 c3najA_ not modelled 37.8 24 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-8; PDBTitle: crystal structure of a protease-resistant mutant form of human2 galectin-8 36 c3a0jB_ not modelled 37.3 23 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 37 d2hqsa2 not modelled 31.9 25 Fold:Anticodon-binding domain-like Superfamily:TolB, N-terminal domain Family:TolB, N-terminal domain 38 c3dm3A_ not modelled 27.5 24 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 39 d1llca1 not modelled 25.3 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 40 c2kcmA_ not modelled 24.8 20 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 41 c3o0rC_ not modelled 23.8 10 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 42 c2dycA_ not modelled 23.7 21 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-4; PDBTitle: crystal structure of the n-terminal domain of mouse galectin-4 43 c3b9cB_ not modelled 23.0 25 PDB header:unknown function Chain: B: PDB Molecule:hspc159; PDBTitle: crystal structure of human grp crd 44 c3nv4A_ not modelled 22.4 4 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin 9 short isoform variant; PDBTitle: crystal structure of human galectin-9 c-terminal crd in complex with2 sialyllactose 45 c1n10A_ not modelled 21.8 15 PDB header:allergen Chain: A: PDB Molecule:pollen allergen phl p 1; PDBTitle: crystal structure of phl p 1, a major timothy grass pollen allergen 46 c2pqaB_ not modelled 21.8 13 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 47 c3mxnB_ not modelled 21.6 19 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 48 c2yroA_ not modelled 20.7 21 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-8; PDBTitle: solution structure of the c-terminal gal-bind lectin2 protein from human galectin-8 49 c1fguA_ not modelled 19.1 12 PDB header:replication Chain: A: PDB Molecule:replication protein a 70 kda dna-binding subunit; PDBTitle: ssdna-binding domain of the large subunit of replication2 protein a 50 d2gala_ not modelled 19.0 21 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Galectin (animal S-lectin) 51 c2yxsA_ not modelled 18.4 29 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-8 variant; PDBTitle: crystal sturcture of n-terminal domain of human galectin-8 with d-2 lactose 52 d2nn8a1 not modelled 18.2 17 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Galectin (animal S-lectin) 53 c2k5nA_ not modelled 17.6 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a 54 c1gm5A_ not modelled 17.5 15 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 55 c2yf3F_ not modelled 16.1 27 PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese 56 d1h95a_ not modelled 16.0 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 57 d1g6pa_ not modelled 15.8 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 58 c3e9hB_ not modelled 15.7 21 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 59 c3kojA_ not modelled 15.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ycf41; PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein2 from synechococcus sp. northeast structural genomics3 consortium target snr59a. 60 d1lr0a_ not modelled 15.5 18 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 61 c2d6lX_ not modelled 14.9 25 PDB header:sugar binding protein Chain: X: PDB Molecule:lectin, galactose binding, soluble 9; PDBTitle: crystal structure of mouse galectin-9 n-terminal crd2 (crystal form 2) 62 d1n10a1 not modelled 14.2 11 Fold:C2 domain-like Superfamily:PHL pollen allergen Family:PHL pollen allergen 63 c2ealB_ not modelled 13.8 21 PDB header:sugar binding protein Chain: B: PDB Molecule:galectin-9; PDBTitle: crystal structure of human galectin-9 n-terminal crd in complex with2 forssman pentasaccharide 64 c2wsuB_ not modelled 13.1 16 PDB header:viral protein Chain: B: PDB Molecule:putative fiber protein; PDBTitle: galectin domain of porcine adenovirus type 4 nadc-1 isolate2 fibre 65 d1whoa_ not modelled 12.8 19 Fold:C2 domain-like Superfamily:PHL pollen allergen Family:PHL pollen allergen 66 d1okja1 not modelled 12.2 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 67 c2hczX_ not modelled 12.1 9 PDB header:allergen Chain: X: PDB Molecule:beta-expansin 1a; PDBTitle: crystal structure of expb1 (zea m 1), a beta-expansin and group-12 pollen allergen from maize 68 d1l4ia2 not modelled 11.9 17 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 69 d1ldna1 not modelled 11.2 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 70 d1jmca1 not modelled 10.9 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 71 d2a6aa1 not modelled 10.9 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 72 d1k8wa3 not modelled 10.8 10 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 73 c3lhnB_ not modelled 10.8 29 PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein; PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution 74 c3k6oA_ not modelled 10.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf1344; PDBTitle: crystal structure of protein of unknown function duf13442 (yp_001299214.1) from bacteroides vulgatus atcc 8482 at 2.00 a3 resolution 75 c2qneA_ not modelled 10.6 22 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution 76 c1ynxA_ not modelled 10.5 10 PDB header:dna binding protein Chain: A: PDB Molecule:replication factor-a protein 1; PDBTitle: solution structure of dna binding domain a (dbd-a) of2 s.cerevisiae replication protein a (rpa) 77 d1krta_ not modelled 10.2 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 78 d1txya_ not modelled 9.9 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 79 d1nnxa_ not modelled 9.4 19 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 80 d1jnya1 not modelled 9.2 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 81 d1c0pa1 not modelled 9.1 15 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 82 c1e22A_ not modelled 9.1 24 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 83 c3eoeC_ not modelled 9.1 18 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 84 d1e1oa1 not modelled 8.8 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 85 c2jnzA_ not modelled 8.7 26 PDB header:allergen Chain: A: PDB Molecule:phl p 3 allergen; PDBTitle: solution structure of phl p 3, a major allergen from2 timothy grass pollen 86 c1llcA_ not modelled 8.2 11 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution 87 d1mjca_ not modelled 8.1 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 88 c1x50A_ not modelled 8.0 17 PDB header:sugar binding protein Chain: A: PDB Molecule:galectin-4; PDBTitle: solution structure of the c-terminal gal-bind lectin domain2 from human galectin-4 89 c2z4hB_ not modelled 7.6 29 PDB header:signaling protein activator Chain: B: PDB Molecule:copper homeostasis protein cutf; PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli 90 c2kncA_ not modelled 7.6 17 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 91 d1jmca2 not modelled 7.5 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 92 d1rmda1 not modelled 6.9 13 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 93 c3e8gB_ not modelled 6.8 0 PDB header:membrane protein Chain: B: PDB Molecule:potassium channel protein; PDBTitle: crystal structure of the the open nak channel-na+/ca2+ complex 94 c2j7aC_ not modelled 6.6 19 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 95 c2eqmA_ not modelled 6.6 14 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 96 d1o65a_ not modelled 6.5 25 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:MOSC (MOCO sulphurase C-terminal) domain 97 c3e1rB_ not modelled 6.5 20 PDB header:cell cycle/transport protein Chain: B: PDB Molecule:centrosomal protein of 55 kda; PDBTitle: midbody targeting of the escrt machinery by a non-canonical2 coiled-coil in cep55 98 d1ldma1 not modelled 6.5 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 99 c1jpeA_ not modelled 6.4 21 PDB header:electron transport Chain: A: PDB Molecule:dsbd-alpha; PDBTitle: crystal structure of dsbd-alpha; the n-terminal domain of2 dsbd

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0