Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	K	I	I	V	A	C	G	G	A	V	A	T	S	T	M	A	A	E	E	I	K	E	L	C	Q	N	H	N	I	P	V	E	L	I	Q	C	R	V	N	E	I	E	T	Y	M	D	G	V	H	L	I	C	T	T	A	K	V
Secondary structure
SS confidence
Disorder		?	?	?																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Sequence		D	R	S	F	G	D	I	P	L	V	H	G	M	P	F	I	S	G	I	G	I	E	A	L	Q	N	K	I	L	T	I	L	Q	G
Secondary structure
SS confidence
Disorder		?	?																															?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tvm chain A Region: 2 - 94 Aligned: 93 Modelled: 93 Confidence: 99.9% Identity: 96% PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system Phyre2 PDB 3czc chain A Region: 3 - 93 Aligned: 91 Modelled: 91 Confidence: 99.8% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans Phyre2 PDB 1vkr chain A Region: 3 - 90 Aligned: 86 Modelled: 88 Confidence: 99.6% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii Phyre2 PDB 1vkr chain A Region: 3 - 90 Aligned: 86 Modelled: 88 Confidence: 99.6% Identity: 19% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 1iib chain A Region: 2 - 93 Aligned: 91 Modelled: 92 Confidence: 99.1% Identity: 10% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 3sqn chain B Region: 2 - 90 Aligned: 83 Modelled: 87 Confidence: 99.0% Identity: 10% PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis Phyre2 PDB 2l2q chain A Region: 2 - 93 Aligned: 91 Modelled: 92 Confidence: 98.9% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi Phyre2 PDB 3nbm chain A Region: 4 - 93 Aligned: 89 Modelled: 90 Confidence: 98.8% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. Phyre2 PDB 2kyr chain A Region: 1 - 92 Aligned: 92 Modelled: 92 Confidence: 98.1% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 Phyre2 PDB 2r48 chain A domain 1 Region: 5 - 90 Aligned: 86 Modelled: 86 Confidence: 97.2% Identity: 19% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 1ycg chain A domain 1 Region: 2 - 60 Aligned: 59 Modelled: 59 Confidence: 95.8% Identity: 12% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1dg9 chain A Region: 1 - 40 Aligned: 40 Modelled: 40 Confidence: 95.6% Identity: 18% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: Phosphotyrosine protein phosphatases I Family: Low-molecular-weight phosphotyrosine protein phosphatases Phyre2 PDB 2r4q chain A domain 1 Region: 5 - 90 Aligned: 84 Modelled: 84 Confidence: 95.3% Identity: 13% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 1vme chain A domain 1 Region: 2 - 60 Aligned: 59 Modelled: 59 Confidence: 94.7% Identity: 8% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1e5d chain A domain 1 Region: 2 - 60 Aligned: 59 Modelled: 59 Confidence: 94.5% Identity: 14% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3nhz chain A Region: 1 - 86 Aligned: 81 Modelled: 86 Confidence: 94.1% Identity: 16% PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra Phyre2 PDB 1f4p chain A Region: 3 - 59 Aligned: 57 Modelled: 57 Confidence: 94.1% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2hnb chain A Region: 1 - 58 Aligned: 57 Modelled: 58 Confidence: 92.5% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin Phyre2 PDB 3f6s chain I Region: 4 - 60 Aligned: 57 Modelled: 57 Confidence: 92.1% Identity: 18% PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers Phyre2 PDB 1tll chain A domain 2 Region: 2 - 59 Aligned: 57 Modelled: 58 Confidence: 92.1% Identity: 12% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 1 c1tvmA_ 2 c3czcA_ 3 c1vkrA_ 4 d1vkra_ 5 d1iiba_ 6 c3sqnB_ 7 c2l2qA_ 8 c3nbmA_ 9 c2kyrA_ 10 d2r48a1 11 d1ycga1 12 d1dg9a_ 13 d2r4qa1 14 d1vmea1 15 d1e5da1 16 c3nhzA_ 17 d1f4pa_ 18 c2hnbA_ 19 c3f6sI_ 20 d1tlla2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1tvmA_ 99.9 96 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 2 c3czcA_ 99.8 12 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 3 c1vkrA_ 99.6 19 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 4 d1vkra_ 99.6 19 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 5 d1iiba_ 99.1 10 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 6 c3sqnB_ 99.0 10 PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis 7 c2l2qA_ 98.9 16 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 8 c3nbmA_ 98.8 18 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 9 c2kyrA_ 98.1 16 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 10 d2r48a1 97.2 19 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 11 d1ycga1 95.8 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 12 d1dg9a_ 95.6 18 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 13 d2r4qa1 95.3 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 14 d1vmea1 94.7 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 15 d1e5da1 94.5 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 16 c3nhzA_ 94.1 16 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 17 d1f4pa_ 94.1 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 18 c2hnbA_ 92.5 18 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 19 c3f6sI_ 92.1 18 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 20 d1tlla2 92.1 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 21 c2wmyH_ not modelled 91.8 24 PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate. 22 c2ohiB_ not modelled 91.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 23 d1b1ca_ not modelled 91.5 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 24 d5pnta_ not modelled 91.4 18 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 25 c2gi4A_ not modelled 91.1 33 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 26 c3hr4C_ not modelled 91.1 9 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 27 c3fniA_ not modelled 91.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 28 c1vmeB_ not modelled 90.2 9 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 29 c2fekA_ not modelled 89.7 21 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: structure of a protein tyrosine phosphatase 30 c3k7pA_ not modelled 89.4 25 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 31 c3m1pA_ not modelled 89.4 25 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 32 d1ydga_ not modelled 89.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 33 c3he8A_ not modelled 89.4 35 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 34 c3d7nA_ not modelled 89.3 10 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 35 c3klbA_ not modelled 89.1 13 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 36 d1ja1a2 not modelled 89.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 37 d2vvpa1 not modelled 88.9 25 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 38 c3s5pA_ not modelled 88.8 35 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 39 d1nn4a_ not modelled 88.8 35 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 40 d1ykga1 not modelled 88.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 41 d2a5la1 not modelled 88.5 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 42 c3hlyA_ not modelled 88.4 11 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 43 c2q5cA_ not modelled 88.4 12 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 44 c2cwdA_ not modelled 88.3 15 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8 45 d1d1qa_ not modelled 88.2 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 46 c1bvyF_ not modelled 88.2 7 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 47 d1bvyf_ not modelled 88.2 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 48 c1zggA_ not modelled 87.7 25 PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis 49 d2arka1 not modelled 87.6 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 50 c3onoA_ not modelled 87.5 10 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 51 c1u2pA_ not modelled 87.4 13 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution 52 c3rofA_ not modelled 87.4 19 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa; PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa 53 c2wc1A_ not modelled 87.1 21 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 54 c2ppwA_ not modelled 85.9 21 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 55 d1jf8a_ not modelled 85.7 32 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 56 d5nula_ not modelled 85.1 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 57 c2an1D_ not modelled 85.1 12 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 58 c3qd5B_ not modelled 85.0 11 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 59 c3edoA_ not modelled 82.7 12 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 60 c3jviA_ not modelled 82.6 27 PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica 61 c3c5yD_ not modelled 81.8 22 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 62 c3cfyA_ not modelled 81.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 63 d1u0ta_ not modelled 81.2 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 64 d1o1xa_ not modelled 81.0 26 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 65 c1k97A_ not modelled 80.4 14 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 66 c1e5dA_ not modelled 80.3 12 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 67 d2fz5a1 not modelled 79.8 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 68 c2l18A_ not modelled 79.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state 69 d1iowa1 not modelled 78.5 17 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 70 c2zkiH_ not modelled 78.5 17 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 71 c2q9uB_ not modelled 78.1 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 72 c1ychD_ not modelled 77.5 12 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 73 d1yoba1 not modelled 77.5 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 74 d1p8aa_ not modelled 77.0 14 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 75 d1oboa_ not modelled 76.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 76 d1czna_ not modelled 75.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 77 d2fcra_ not modelled 75.6 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 78 d1d4aa_ not modelled 74.6 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 79 d1mvoa_ not modelled 73.9 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 80 c3pfnB_ not modelled 73.5 16 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 81 d1s5pa_ not modelled 72.5 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 82 d1rlia_ not modelled 69.5 24 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 83 c2i2aA_ not modelled 69.2 10 PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes 84 c3b6iB_ not modelled 68.4 11 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 85 d2qwxa1 not modelled 67.9 6 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 86 c2q3fB_ not modelled 66.7 14 PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp 87 d2eyqa5 not modelled 66.4 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 88 c1wv9B_ not modelled 65.1 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8 89 c3t38B_ not modelled 63.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 90 c3sc6F_ not modelled 62.6 11 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 91 c3q9sA_ not modelled 60.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans 92 d1fmfa_ not modelled 59.5 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 93 d1y1la_ not modelled 59.5 20 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 94 d1jl3a_ not modelled 58.7 24 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 95 c2dlnA_ not modelled 58.2 16 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 96 c3rpeA_ not modelled 57.9 9 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 97 c1j9zB_ not modelled 56.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 98 d1u9ca_ not modelled 54.9 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 99 c3okfA_ not modelled 53.5 17 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 100 c3afoB_ not modelled 50.6 13 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 101 c1vl2C_ not modelled 49.6 23 PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution 102 c2ehdB_ not modelled 49.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family; PDBTitle: crystal structure analysis of oxidoreductase 103 c3cm0A_ not modelled 48.5 15 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8 104 d1e6ca_ not modelled 46.6 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 105 c2nz2A_ not modelled 46.1 17 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline 106 d1q1aa_ not modelled 45.7 36 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 107 d1krwa_ not modelled 45.4 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 108 d1gpma2 not modelled 45.1 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 109 d1kaoa_ not modelled 45.1 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 110 d1a4ia1 not modelled 44.6 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 111 c1ulzA_ not modelled 44.5 19 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 112 c3ktdC_ not modelled 43.4 13 PDB header:oxidoreductase Chain: C: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution 113 d1t5ba_ not modelled 43.2 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 114 d2b4ya1 not modelled 43.2 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 115 d1vl2a1 not modelled 43.1 26 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 116 c2qk4A_ not modelled 42.1 13 PDB header:ligase Chain: A: PDB Molecule:trifunctional purine biosynthetic protein adenosine-3; PDBTitle: human glycinamide ribonucleotide synthetase 117 c2yy7B_ not modelled 41.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:l-threonine dehydrogenase; PDBTitle: crystal structure of thermolabile l-threonine dehydrogenase from2 flavobacterium frigidimaris kuc-1 118 d1k9sa_ not modelled 41.6 11 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 119 c3i2vA_ not modelled 41.2 26 PDB header:transferase Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3; PDBTitle: crystal structure of human mocs3 rhodanese-like domain 120 c3tl6B_ not modelled 41.0 5 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0