Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	V	I	A	S	L	E	K	V	L	L	P	F	A	V	K	I	G	K	Q	P	H	V	N	A	I	K	N	G	F	I	R	L	M	P	L	T	L	A	G	A	M	F	V	L	I	N	N	V	F	L	S	F	G	E	G	S	F
Secondary structure
SS confidence
Disorder		?	?	?											?																																					?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	Y	S	L	G	I	R	L	D	A	S	T	I	E	T	L	N	G	L	K	G	I	G	G	N	V	Y	N	G	T	L	G	I	M	S	L	M	A	P	F	F	I	G	M	A	L	A	E	E	R	K	V	D	A	L	A	A	G	L	L
Secondary structure
SS confidence
Disorder								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	V	A	A	F	M	T	V	T	P	Y	S	V	G	E	A	Y	A	V	G	A	N	W	L	G	G	A	N	I	I	S	G	I	I	I	G	L	V	V	A	E	M	F	T	F	I	V	R	R	N	W	V	I	K	L	P	D	S	V	P
Secondary structure
SS confidence
Disorder												?		?	?								?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	S	V	S	R	S	F	S	A	L	I	P	G	F	I	I	L	S	V	M	G	I	I	A	W	A	L	N	T	W	G	T	N	F	H	Q	I	I	M	D	T	I	S	T	P	L	A	S	L	G	S	V	V	G	W	A	Y	V	I	F
Secondary structure
SS confidence
Disorder																																																?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	P	L	L	W	F	F	G	I	H	G	A	L	A	L	T	A	L	D	N	G	I	M	T	P	W	A	L	E	N	I	A	T	Y	Q	Q	Y	G	S	V	E	A	A	L	A	A	G	K	T	F	H	I	W	A	K	P	M	L	D	S
Secondary structure
SS confidence
Disorder																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	I	F	L	G	G	S	G	A	T	L	G	L	I	L	A	I	F	I	A	S	R	R	A	D	Y	R	Q	V	A	K	L	A	L	P	S	G	I	F	Q	I	N	E	P	I	L	F	G	L	P	I	I	M	N	P	V	M	F	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	V	L	V	Q	P	I	L	A	A	I	T	L	A	A	Y	Y	M	G	I	I	P	P	V	T	N	I	A	P	W	T	M	P	T	G	L	G	A	F	F	N	T	N	G	S	V	A	A	L	L	V	A	L	F	N	L	G	I	A	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Sequence		L	I	Y	L	P	F	V	V	V	A	N	K	A	Q	N	A	I	D	K	E	E	S	E	E	D	I	A	N	A	L	K	F
Secondary structure
SS confidence
Disorder																?	?	?	?											?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qnq chain D Region: 6 - 445 Aligned: 420 Modelled: 420 Confidence: 100.0% Identity: 32% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 2oar chain A domain 1 Region: 405 - 451 Aligned: 47 Modelled: 47 Confidence: 83.2% Identity: 19% Fold: Gated mechanosensitive channel Superfamily: Gated mechanosensitive channel Family: Gated mechanosensitive channel Phyre2 PDB 2knc chain A Region: 405 - 445 Aligned: 41 Modelled: 41 Confidence: 64.0% Identity: 24% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2oar chain A Region: 357 - 451 Aligned: 93 Modelled: 95 Confidence: 61.5% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) Phyre2 PDB 3b9y chain A Region: 303 - 449 Aligned: 139 Modelled: 147 Confidence: 49.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 1to9 chain A Region: 3 - 31 Aligned: 29 Modelled: 29 Confidence: 40.6% Identity: 14% Fold: Heme oxygenase-like Superfamily: Heme oxygenase-like Family: TENA/THI-4 Phyre2 PDB 1to9 chain A Region: 3 - 31 Aligned: 29 Modelled: 29 Confidence: 40.6% Identity: 14% PDB header:biosynthetic protein Chain: A: PDB Molecule:thi-4 protein; PDBTitle: crystal structure of thi-4 protein from bacillus subtilis Phyre2 PDB 2qcx chain A Region: 3 - 31 Aligned: 29 Modelled: 29 Confidence: 30.0% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of bacillus subtilis tena y112f mutant complexed2 with formyl aminomethyl pyrimidine Phyre2 PDB 2rd3 chain A Region: 3 - 31 Aligned: 29 Modelled: 29 Confidence: 29.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of tena homologue (hp1287) from2 helicobacter pylori Phyre2 PDB 1udd chain A Region: 3 - 31 Aligned: 29 Modelled: 29 Confidence: 25.3% Identity: 21% Fold: Heme oxygenase-like Superfamily: Heme oxygenase-like Family: TENA/THI-4 Phyre2 PDB 2knc chain B Region: 406 - 445 Aligned: 40 Modelled: 40 Confidence: 23.5% Identity: 18% PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 3mvu chain A Region: 2 - 31 Aligned: 30 Modelled: 30 Confidence: 22.9% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:tena family transcriptional regulator; PDBTitle: crystal structure of a tena family transcription regulator2 (tm1040_3656) from silicibacter sp. tm1040 at 1.80 a resolution Phyre2 PDB 3no6 chain B Region: 4 - 31 Aligned: 28 Modelled: 28 Confidence: 19.2% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of a putative thiaminase ii (se1693) from2 staphylococcus epidermidis atcc 12228 at 1.65 a resolution Phyre2 PDB 1rtw chain A Region: 3 - 31 Aligned: 29 Modelled: 24 Confidence: 17.0% Identity: 7% Fold: Heme oxygenase-like Superfamily: Heme oxygenase-like Family: TENA/THI-4 Phyre2 PDB 1z72 chain A domain 1 Region: 4 - 31 Aligned: 28 Modelled: 28 Confidence: 14.4% Identity: 14% Fold: Heme oxygenase-like Superfamily: Heme oxygenase-like Family: TENA/THI-4 Phyre2 PDB 3oql chain A Region: 2 - 31 Aligned: 30 Modelled: 26 Confidence: 12.2% Identity: 7% PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution Phyre2 PDB 3dtu chain B domain 2 Region: 404 - 447 Aligned: 44 Modelled: 44 Confidence: 11.8% Identity: 9% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 2gm8 chain A domain 1 Region: 4 - 31 Aligned: 28 Modelled: 28 Confidence: 11.7% Identity: 21% Fold: Heme oxygenase-like Superfamily: Heme oxygenase-like Family: TENA/THI-4 Phyre2 PDB 2qzc chain B Region: 4 - 31 Aligned: 28 Modelled: 27 Confidence: 11.5% Identity: 14% PDB header:lyase Chain: B: PDB Molecule:transcriptional activator tena-1; PDBTitle: crystal structure of a putative tena-like thiaminase (tena-1, sso2206)2 from sulfolobus solfataricus p2 at 1.50 a resolution Phyre2 PDB 2rdd chain B Region: 410 - 440 Aligned: 31 Modelled: 31 Confidence: 10.4% Identity: 13% PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. Phyre2 1 c3qnqD_ 2 d2oara1 3 c2kncA_ 4 c2oarA_ 5 c3b9yA_ 6 d1to9a_ 7 c1to9A_ 8 c2qcxA_ 9 c2rd3A_ 10 d1udda_ 11 c2kncB_ 12 c3mvuA_ 13 c3no6B_ 14 d1rtwa_ 15 d1z72a1 16 c3oqlA_ 17 d3dtub2 18 d2gm8a1 19 c2qzcB_ 20 c2rddB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qnqD_ 100.0 32 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 2 d2oara1 83.2 19 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 3 c2kncA_ 64.0 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 4 c2oarA_ 61.5 16 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 5 c3b9yA_ 49.0 16 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 6 d1to9a_ 40.6 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 7 c1to9A_ 40.6 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:thi-4 protein; PDBTitle: crystal structure of thi-4 protein from bacillus subtilis 8 c2qcxA_ 30.0 14 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of bacillus subtilis tena y112f mutant complexed2 with formyl aminomethyl pyrimidine 9 c2rd3A_ 29.0 21 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of tena homologue (hp1287) from2 helicobacter pylori 10 d1udda_ 25.3 21 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 11 c2kncB_ 23.5 18 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 12 c3mvuA_ 22.9 13 PDB header:transcription regulator Chain: A: PDB Molecule:tena family transcriptional regulator; PDBTitle: crystal structure of a tena family transcription regulator2 (tm1040_3656) from silicibacter sp. tm1040 at 1.80 a resolution 13 c3no6B_ 19.2 14 PDB header:hydrolase Chain: B: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of a putative thiaminase ii (se1693) from2 staphylococcus epidermidis atcc 12228 at 1.65 a resolution 14 d1rtwa_ 17.0 7 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 15 d1z72a1 14.4 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 16 c3oqlA_ 12.2 7 PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 17 d3dtub2 11.8 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 18 d2gm8a1 11.7 21 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 19 c2qzcB_ 11.5 14 PDB header:lyase Chain: B: PDB Molecule:transcriptional activator tena-1; PDBTitle: crystal structure of a putative tena-like thiaminase (tena-1, sso2206)2 from sulfolobus solfataricus p2 at 1.50 a resolution 20 c2rddB_ 10.4 13 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 21 c1unyA_ not modelled 10.4 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 22 c1u9hB_ not modelled 9.6 27 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of e(22)l(23) 23 d1rzsa_ not modelled 9.4 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 24 c1hgvA_ not modelled 9.0 11 PDB header:virus Chain: A: PDB Molecule:ph75 inovirus major coat protein; PDBTitle: filamentous bacteriophage ph75 25 c2ccfA_ not modelled 8.8 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 26 c1unwB_ not modelled 8.5 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 27 c1unyB_ not modelled 8.5 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 28 c1uo0B_ not modelled 8.4 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 29 c1uo0A_ not modelled 8.4 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 30 c1uo1A_ not modelled 8.4 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 31 c1uo1B_ not modelled 8.4 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 32 c1unxA_ not modelled 8.4 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 33 c1gclD_ not modelled 8.4 29 PDB header:leucine zipper Chain: D: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 34 c1gclA_ not modelled 8.4 29 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 35 c1gclC_ not modelled 8.4 29 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 36 c2cceA_ not modelled 8.4 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 37 c2cceB_ not modelled 8.4 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 38 c1u9hA_ not modelled 8.3 29 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of e(22)l(23) 39 c3ddeB_ not modelled 8.3 15 PDB header:unknown function Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution 40 c2wwbA_ not modelled 8.1 13 PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 41 c1rkcB_ not modelled 8.0 14 PDB header:cell adhesion, structural protein Chain: B: PDB Molecule:talin; PDBTitle: human vinculin head (1-258) in complex with talin's2 vinculin binding site 3 (residues 1944-1969) 42 c3hd6A_ not modelled 7.9 11 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 43 d3ehbb2 not modelled 7.9 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 44 c3s90D_ not modelled 7.9 30 PDB header:cell adhesion Chain: D: PDB Molecule:talin-1; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546) 45 c1w5iA_ not modelled 7.8 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 46 c1uo2A_ not modelled 7.8 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 47 c2w8aC_ not modelled 7.8 7 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 48 c1unxB_ not modelled 7.7 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 49 c1w5iB_ not modelled 7.7 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 50 c1uo2B_ not modelled 7.7 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 51 c1u9fA_ not modelled 7.7 31 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 52 c1ij1C_ not modelled 7.6 20 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 53 c1ij1B_ not modelled 7.6 20 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 54 c1ij1A_ not modelled 7.6 20 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 55 c1w5kC_ not modelled 7.6 29 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 56 c1w5kB_ not modelled 7.6 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 57 c1w5kD_ not modelled 7.6 29 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 58 c1w5kA_ not modelled 7.6 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 59 c1piqA_ not modelled 7.4 21 PDB header:dna binding protein Chain: A: PDB Molecule:protein (general control protein gcn4-piq); PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues 60 c1w5jC_ not modelled 7.4 29 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 61 c1w5jD_ not modelled 7.4 29 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 62 c1w5jA_ not modelled 7.4 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 63 c1w5jB_ not modelled 7.4 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 64 c3oqlB_ not modelled 7.3 7 PDB header:transcription Chain: B: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 65 c1gcmA_ not modelled 7.2 20 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 66 c3lo0A_ not modelled 7.2 24 PDB header:hydrolase Chain: A: PDB Molecule:inorganic pyrophosphatase; PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis 67 c1u9fB_ not modelled 7.2 31 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 68 c1u9fC_ not modelled 7.2 31 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 69 c1u9fD_ not modelled 7.1 31 PDB header:transcription Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 70 c1gclB_ not modelled 7.0 29 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 71 c1ij0B_ not modelled 6.9 20 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 72 c1ij0A_ not modelled 6.9 20 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 73 c1ij0C_ not modelled 6.9 20 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 74 d1pv7a_ not modelled 6.8 6 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 75 d1h3ga1 not modelled 6.8 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 76 c1gcmB_ not modelled 6.8 20 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 77 c1gcmC_ not modelled 6.7 20 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 78 d1j9ia_ not modelled 6.5 17 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 79 c2jo1A_ not modelled 6.5 20 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 80 c2a45J_ not modelled 6.4 14 PDB header:hydrolase/hydrolase inhibitor Chain: J: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin 81 c2b2hA_ not modelled 6.4 14 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) 82 d2nr9a1 not modelled 6.3 24 Fold:Rhomboid-like Superfamily:Rhomboid-like Family:Rhomboid-like 83 c3hd7A_ not modelled 6.2 10 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 84 c1f3mB_ not modelled 6.2 11 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: crystal structure of human serine/threonine kinase pak1 85 c3hzqA_ not modelled 6.1 14 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state 86 c2wpzA_ not modelled 6.1 21 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 87 c3dzvB_ not modelled 6.0 14 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 88 c2k9pA_ not modelled 5.9 22 PDB header:membrane protein Chain: A: PDB Molecule:pheromone alpha factor receptor; PDBTitle: structure of tm1_tm2 in lppg micelles 89 c3iz5d_ not modelled 5.8 19 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4 (l4p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 90 c2q9kA_ not modelled 5.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution 91 c2wpzB_ not modelled 5.7 21 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 92 c1ld4E_ not modelled 5.7 21 PDB header:virus Chain: E: PDB Molecule:general control protein gcn4; PDBTitle: placement of the structural proteins in sindbis virus 93 c2o60B_ not modelled 5.7 44 PDB header:metal binding protein Chain: B: PDB Molecule:peptide corresponding to calmodulin binding domain of PDBTitle: calmodulin bound to peptide from neuronal nitric oxide synthase 94 c1rb4C_ not modelled 5.7 21 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 95 c2wpzC_ not modelled 5.6 21 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 96 c1ziiA_ not modelled 5.6 21 PDB header:leucine zipper Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state 97 c1ziiB_ not modelled 5.6 21 PDB header:leucine zipper Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant asn16aba in the dimeric2 state 98 c2wpyA_ not modelled 5.6 20 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with one vxxnxxx motif2 coordinating chloride 99 c1swiB_ not modelled 5.6 21 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0