Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	V	L	L	I	I	L	L	L	L	V	V	L	G	I	A	A	G	V	G	V	W	K	V	R	H	L	A	D	S	K	L	L	I	K	E	E	T	I	F	T	L	K	P	G	T	G	R	L	A	L	G	E	Q	L	Y	A	D
Secondary structure
SS confidence
Disorder		?	?																										?		?	?	?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	I	I	N	R	P	R	V	F	Q	W	L	L	R	I	E	P	D	L	S	H	F	K	A	G	T	Y	R	F	T	P	Q	M	T	V	R	E	M	L	K	L	L	E	S	G	K	E	A	Q	F	P	L	R	L	V	E	G	M	R	L
Secondary structure
SS confidence
Disorder																		?	?		?	?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	D	Y	L	K	Q	L	R	E	A	P	Y	I	K	H	T	L	S	D	D	K	Y	A	T	V	A	Q	A	L	E	L	E	N	P	E	W	I	E	G	W	F	W	P	D	T	W	M	Y	T	A	N	T	T	D	V	A	L	L	K	R
Secondary structure
SS confidence
Disorder												?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	H	K	K	M	V	K	A	V	D	S	A	W	E	G	R	A	D	G	L	P	Y	K	D	K	N	Q	L	V	T	M	A	S	I	I	E	K	E	T	A	V	A	S	E	R	D	K	V	A	S	V	F	I	N	R	L	R	I	G	M
Secondary structure
SS confidence
Disorder																			?	?	?		?																			?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	L	Q	T	D	P	T	V	I	Y	G	M	G	E	R	Y	N	G	K	L	S	R	A	D	L	E	T	P	T	A	Y	N	T	Y	T	I	T	G	L	P	P	G	A	I	A	T	P	G	A	D	S	L	K	A	A	A	H	P	A	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Sequence		T	P	Y	L	Y	F	V	A	D	G	K	G	G	H	T	F	N	T	N	L	A	S	H	N	K	S	V	Q	D	Y	L	K	V	L	K	E	K	N	A	Q
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2r1f chain B Region: 81 - 340 Aligned: 260 Modelled: 260 Confidence: 100.0% Identity: 97% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:predicted aminodeoxychorismate lyase; PDBTitle: crystal structure of predicted aminodeoxychorismate lyase from2 escherichia coli Phyre2 PDB 3bz6 chain A domain 1 Region: 197 - 227 Aligned: 30 Modelled: 31 Confidence: 45.6% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PSPTO2686-like Phyre2 PDB 2v3s chain B Region: 43 - 98 Aligned: 56 Modelled: 56 Confidence: 44.5% Identity: 7% PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase osr1; PDBTitle: structural insights into the recognition of substrates and2 activators by the osr1 kinase Phyre2 PDB 1l0w chain A domain 2 Region: 277 - 310 Aligned: 34 Modelled: 34 Confidence: 38.3% Identity: 29% Fold: DCoH-like Superfamily: GAD domain-like Family: GAD domain Phyre2 PDB 1gjj chain A domain 2 Region: 278 - 293 Aligned: 16 Modelled: 16 Confidence: 36.9% Identity: 25% Fold: LEM/SAP HeH motif Superfamily: LEM domain Family: LEM domain Phyre2 PDB 3r85 chain E Region: 207 - 226 Aligned: 20 Modelled: 19 Confidence: 34.5% Identity: 40% PDB header:apoptosis Chain: E: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl Phyre2 PDB 1eg7 chain A Region: 227 - 250 Aligned: 24 Modelled: 24 Confidence: 34.4% Identity: 33% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 1h9f chain A Region: 278 - 296 Aligned: 19 Modelled: 19 Confidence: 33.9% Identity: 21% Fold: LEM/SAP HeH motif Superfamily: LEM domain Family: LEM domain Phyre2 PDB 1ztw chain A domain 1 Region: 269 - 338 Aligned: 68 Modelled: 70 Confidence: 33.3% Identity: 16% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Reverse transcriptase Phyre2 PDB 3bz6 chain A Region: 197 - 227 Aligned: 30 Modelled: 31 Confidence: 33.1% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0502 protein pspto_2686; PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 1jei chain A Region: 278 - 284 Aligned: 7 Modelled: 7 Confidence: 32.5% Identity: 29% Fold: LEM/SAP HeH motif Superfamily: LEM domain Family: LEM domain Phyre2 PDB 3r85 chain G Region: 207 - 226 Aligned: 20 Modelled: 18 Confidence: 32.1% Identity: 40% PDB header:apoptosis Chain: G: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl Phyre2 PDB 1e0g chain A Region: 38 - 86 Aligned: 41 Modelled: 49 Confidence: 29.6% Identity: 10% Fold: LysM domain Superfamily: LysM domain Family: LysM domain Phyre2 PDB 2fug chain 1 domain 3 Region: 83 - 117 Aligned: 35 Modelled: 35 Confidence: 26.9% Identity: 20% Fold: beta-Grasp (ubiquitin-like) Superfamily: Nqo1 middle domain-like Family: Nqo1 middle domain-like Phyre2 PDB 2exu chain A Region: 71 - 162 Aligned: 87 Modelled: 92 Confidence: 26.7% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Phyre2 PDB 3do6 chain B Region: 227 - 247 Aligned: 21 Modelled: 21 Confidence: 26.2% Identity: 29% PDB header:ligase Chain: B: PDB Molecule:formate--tetrahydrofolate ligase; PDBTitle: crystal structure of putative formyltetrahydrofolate2 synthetase (tm1766) from thermotoga maritima at 1.85 a3 resolution Phyre2 PDB 3r85 chain F Region: 203 - 219 Aligned: 17 Modelled: 17 Confidence: 26.2% Identity: 41% PDB header:apoptosis Chain: F: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl Phyre2 PDB 1gjj chain A Region: 278 - 284 Aligned: 7 Modelled: 7 Confidence: 25.8% Identity: 57% PDB header:membrane protein Chain: A: PDB Molecule:lap2; PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2 Phyre2 PDB 3lk2 chain B Region: 226 - 297 Aligned: 67 Modelled: 72 Confidence: 25.2% Identity: 16% PDB header:protein binding Chain: B: PDB Molecule:f-actin-capping protein subunit beta isoforms 1 and 2; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil Phyre2 PDB 3f1i chain H Region: 230 - 249 Aligned: 20 Modelled: 20 Confidence: 24.6% Identity: 30% PDB header:protein binding Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: human escrt-0 core complex Phyre2 1 c2r1fB_ 2 d3bz6a1 3 c2v3sB_ 4 d1l0wa2 5 d1gjja2 6 c3r85E_ 7 d1eg7a_ 8 d1h9fa_ 9 d1ztwa1 10 c3bz6A_ 11 d1jeia_ 12 c3r85G_ 13 d1e0ga_ 14 d2fug13 15 c2exuA_ 16 c3do6B_ 17 c3r85F_ 18 c1gjjA_ 19 c3lk2B_ 20 c3f1iH_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2r1fB_ 100.0 97 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:predicted aminodeoxychorismate lyase; PDBTitle: crystal structure of predicted aminodeoxychorismate lyase from2 escherichia coli 2 d3bz6a1 45.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like 3 c2v3sB_ 44.5 7 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase osr1; PDBTitle: structural insights into the recognition of substrates and2 activators by the osr1 kinase 4 d1l0wa2 38.3 29 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 5 d1gjja2 36.9 25 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 6 c3r85E_ 34.5 40 PDB header:apoptosis Chain: E: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 7 d1eg7a_ 34.4 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 8 d1h9fa_ 33.9 21 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 9 d1ztwa1 33.3 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 10 c3bz6A_ 33.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0502 protein pspto_2686; PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000 11 d1jeia_ 32.5 29 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 12 c3r85G_ 32.1 40 PDB header:apoptosis Chain: G: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 13 d1e0ga_ 29.6 10 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 14 d2fug13 26.9 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 15 c2exuA_ 26.7 20 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 16 c3do6B_ 26.2 29 PDB header:ligase Chain: B: PDB Molecule:formate--tetrahydrofolate ligase; PDBTitle: crystal structure of putative formyltetrahydrofolate2 synthetase (tm1766) from thermotoga maritima at 1.85 a3 resolution 17 c3r85F_ 26.2 41 PDB header:apoptosis Chain: F: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 18 c1gjjA_ 25.8 57 PDB header:membrane protein Chain: A: PDB Molecule:lap2; PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2 19 c3lk2B_ 25.2 16 PDB header:protein binding Chain: B: PDB Molecule:f-actin-capping protein subunit beta isoforms 1 and 2; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil 20 c3f1iH_ 24.6 30 PDB header:protein binding Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: human escrt-0 core complex 21 c2zktB_ not modelled 23.7 19 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 22 d1wxqa2 not modelled 23.1 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 23 c2dhkA_ not modelled 20.6 8 PDB header:immune system Chain: A: PDB Molecule:tbc1 domain family member 2; PDBTitle: solution structure of the ph domain of tbc1 domain family2 member 2 protein from human 24 c3r85H_ not modelled 18.8 39 PDB header:apoptosis Chain: H: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 25 c3lwfD_ not modelled 18.3 15 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 26 c2yztA_ not modelled 17.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 27 d2zd1b1 not modelled 16.1 15 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 28 c3fwlA_ not modelled 15.9 11 PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli 29 d1hara_ not modelled 14.2 15 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 30 d2ysca1 not modelled 13.8 100 Fold:WW domain-like Superfamily:WW domain Family:WW domain 31 d1nr6a_ not modelled 12.8 56 Fold:Cytochrome P450 Superfamily:Cytochrome P450 Family:Cytochrome P450 32 c3e4eA_ not modelled 11.8 56 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome p450 2e1; PDBTitle: human cytochrome p450 2e1 in complex with the inhibitor 4-2 methylpyrazole 33 d1dt9a3 not modelled 10.9 9 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 34 c2k9xA_ not modelled 10.7 14 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 35 d1oq1a_ not modelled 10.4 41 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Hypothetical protein YesU 36 c2h8kA_ not modelled 10.4 14 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 37 c2ps3A_ not modelled 9.9 7 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 38 d1ujpa_ not modelled 9.5 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 39 c3ed4A_ not modelled 9.5 23 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 40 c1ezjA_ not modelled 9.5 12 PDB header:viral protein, transferase Chain: A: PDB Molecule:nucleocapsid phosphoprotein; PDBTitle: crystal structure of the multimerization domain of the phosphoprotein2 from sendai virus 41 d1plsa_ not modelled 9.5 21 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 42 c1d0rA_ not modelled 9.2 13 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 43 c2qieB_ not modelled 9.2 12 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 44 c1us7B_ not modelled 9.2 14 PDB header:chaperone Chain: B: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: complex of hsp90 and p50 45 d1us7b_ not modelled 9.2 14 Fold:Hsp90 co-chaperone CDC37 Superfamily:Hsp90 co-chaperone CDC37 Family:Hsp90 co-chaperone CDC37 46 d1vjka_ not modelled 8.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 47 c3f5fA_ not modelled 8.7 14 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 48 d1rd5a_ not modelled 8.6 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 49 c3b5qB_ not modelled 8.5 18 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 50 c3s2wB_ not modelled 8.5 7 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1 51 d1c0aa2 not modelled 8.4 13 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 52 d1seia_ not modelled 8.3 10 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 53 c3szzA_ not modelled 8.3 15 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 54 c3po0A_ not modelled 8.2 4 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 55 c3ebsA_ not modelled 8.1 56 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome p450 2a6; PDBTitle: human cytochrome p450 2a6 i208s/i300f/g301a/s369g in complex2 with phenacetin 56 c3lggA_ not modelled 8.1 14 PDB header:hydrolase Chain: A: PDB Molecule:adenosine deaminase cecr1; PDBTitle: crystal structure of human adenosine deaminase growth factor,2 adenosine deaminase type 2 (ada2) complexed with transition state3 analogue, coformycin 57 c3jviA_ not modelled 8.1 19 PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica 58 c3bbnH_ not modelled 8.0 8 PDB header:ribosome Chain: H: PDB Molecule:ribosomal protein s8; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 59 c2ogwB_ not modelled 7.9 7 PDB header:transport protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua PDBTitle: structure of abc type zinc transporter from e. coli 60 d1a9xa1 not modelled 7.8 42 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 61 c3e20C_ not modelled 7.7 15 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 62 c2qzuA_ not modelled 7.7 13 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 63 d2joya1 not modelled 7.5 8 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 64 c2uzhB_ not modelled 7.5 7 PDB header:lyase Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf) 65 d1gx1a_ not modelled 7.5 23 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 66 c3thaB_ not modelled 7.4 15 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. 67 c2dt7A_ not modelled 7.4 67 PDB header:rna binding protein Chain: A: PDB Molecule:splicing factor 3a subunit 3; PDBTitle: solution structure of the second surp domain of human2 splicing factor sf3a120 in complex with a fragment of3 human splicing factor sf3a60 68 c2jugB_ not modelled 7.3 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases 69 d2ouxa2 not modelled 7.3 4 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 70 d1i94h_ not modelled 7.2 8 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 71 c2e0yB_ not modelled 7.2 19 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli 72 c2c1tC_ not modelled 7.0 35 PDB header:protein transport/membrane protein Chain: C: PDB Molecule:nucleoporin nup2; PDBTitle: structure of the kap60p:nup2 complex 73 c2yvsA_ not modelled 7.0 8 PDB header:oxidoreductase Chain: A: PDB Molecule:glycolate oxidase subunit glce; PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8 74 d1s6la1 not modelled 6.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 75 c2pmpA_ not modelled 6.9 23 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana 76 c2o1eB_ not modelled 6.8 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 77 c3f0gA_ not modelled 6.7 21 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp 78 c2nqoB_ not modelled 6.6 25 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase 79 d1iuga_ not modelled 6.6 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 80 d1ecfa1 not modelled 6.6 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 81 d1gph11 not modelled 6.5 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 82 c2iirJ_ not modelled 6.4 16 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 83 d1an7a_ not modelled 6.4 8 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 84 c2j98A_ not modelled 6.4 100 PDB header:rna-binding protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: human coronavirus 229e non structural protein 9 cys69ala2 mutant (nsp9) 85 c1w9qB_ not modelled 6.3 3 PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide 86 d2nnja1 not modelled 6.3 56 Fold:Cytochrome P450 Superfamily:Cytochrome P450 Family:Cytochrome P450 87 c3izcN_ not modelled 6.2 16 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 88 d1a6qa1 not modelled 6.0 71 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 89 d1i6ua_ not modelled 6.0 4 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 90 c3cqxD_ not modelled 5.9 33 PDB header:chaperone Chain: D: PDB Molecule:bag family molecular chaperone regulator 2; PDBTitle: chaperone complex 91 c3lp9C_ not modelled 5.9 27 PDB header:plant protein Chain: C: PDB Molecule:ls-24; PDBTitle: crystal structure of ls24, a seed albumin from lathyrus2 sativus 92 c2vqrA_ not modelled 5.8 13 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 93 c3iz5N_ not modelled 5.8 8 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 94 d2gy9h1 not modelled 5.7 16 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 95 d1b74a1 not modelled 5.7 15 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 96 d1okra_ not modelled 5.7 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 97 c2b5dX_ not modelled 5.6 8 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima 98 d1iv3a_ not modelled 5.6 21 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 99 d2crfa1 not modelled 5.5 8 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Ran-binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0