 |
| Job Description | P28306 | | Confidence | 6.35% | Date | Wed Jan 25 15:20:47 GMT 2012 |
| Rank | 85 | Aligned Residues | 38 |
| % Identity | 3% | Template | c1w9qB_ |
| PDB info |
PDB header:cell adhesion | Chain: B: PDB Molecule:syntenin 1; |
PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide
|
| Resolution | 1.7 Å |
|
|   |   |
80 | . | . | . | . | . | . | . | . | . | 90 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | H | F | K | A | G | T | Y | R | F | T | . |
. |
. |
. |
. |
. |
P | Q | M | T | V | R | E | M | L | K | L | L | E | S | G | K | E | A | Q | F | P | L | R | L | V | E | G | M |
| Query Conservation |   |
  |   |
|
|
|
|   |
|   |
|   | . | . | . | . | . | . |   |   |
|
|   |   |
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|
|   |   |
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   | . |   |   |
|   |
|   |
|   |
|   |   |
| Template Sequence |   |
N | G | L | L | T | E | H | N | I | C | E | I | N | G | Q | N | V | I | G | L | K | D | S | Q | I | A | D | I | L | S | T | S | G | . |
T | V | V | T | I | T | I | M | P | A | F |
| Template Known Secondary structure |   |
T | T |
|
| S | S |  |  |  |  |  |  | T | T |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  | T | S |
| . | S |  |  |  |  |  |  |  |  |
|
|
| Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | |
. | . | . | . | . | . | . | 270 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|