Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP11454
DateThu Jan 5 11:32:39 GMT 2012
Unique Job ID1a7a53ec5862af0e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2vsqA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module
Confidence and coverage
Confidence:100.0% Coverage: 95%
1226 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSQHLPLVAAQPGIWMAEKLSELPSAWSVAHYVELTGEVDSPLLARAVVAGLAQADTLRM
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   .........70.........80.........90.........100.........110.........120
Sequence  RFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQADLQQDLRVDSGKPLVFH
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   .........130.........140.........150.........160.........170.........180
Sequence  QLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTWLRGEPTPASPFTPFADVVEE
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?
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   .........190.........200.........210.........220.........230.........240
Sequence  YQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGRSASADILRLKLEFTDGEFRQLA
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??
























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   .........250.........260.........270.........280.........290.........300
Sequence  TQLSGVQRTDLALALAALWLGRLCNRMDYAAGFIFMRRLGSAALTATGPVLNVLPLGIHI
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   .........310.........320.........330.........340.........350.........360
Sequence  AAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAAGDEPLFGPVLNIKVFDYQLDI
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   .........370.........380.........390.........400.........410.........420
Sequence  PDVQAQTHTLATGPVNDLELALFPDVHGDLSIEILANKQRYDEPTLIQHAERLKMLIAQF
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   .........430.........440.........450.........460.........470.........480
Sequence  AADPALLCGDVDIMLPGEYAQLAQLNATQVEIPETTLSALVAEQAAKTPDAPALADARYL
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   .........490.........500.........510.........520.........530.........540
Sequence  FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP
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   .........550.........560.........570.........580.........590.........600
Sequence  DDRLKMMLEDARPSLLITTDDQLPRFSDVPNLTSLCYNAPLTPQGSAPLQLSQPHHTAYI
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   .........610.........620.........630.........640.........650.........660
Sequence  IFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIA
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   .........670.........680.........690.........700.........710.........720
Sequence  GAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVF
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   .........730.........740.........750.........760.........770.........780
Sequence  CSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVW
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???????????







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   .........790.........800.........810.........820.........830.........840
Sequence  NTGLRILDAMMHPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD
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   .........850.........860.........870.........880.........890.........900
Sequence  VARWLDNGAVEYLGRSDDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGG
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?????
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   .........910.........920.........930.........940.........950.........960
Sequence  DARQLVGYLVSQSGLPLDTSALQAQLRETLPPHMVPVVLLQLPQLPLSANGKLDRKALPL
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  PELKAQAPGRAPKAGSETIIAAAFSSLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQV
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  ARQVTPGQVMVASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQ
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  FSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLG
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  GTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAA
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?
??????

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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  QQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIA
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   .........1270.........1280.........1290...
Sequence  ELDIYRQDCAHVDIISPGTFEKIGPIIRATLNR
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???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2vsq chain A

3D model

Region: 5 - 1292
Aligned: 1226
Modelled: 1256
Confidence: 100.0%
Identity: 23%
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module

Phyre2

PDB 1pg4 chain A

3D model

Region: 404 - 979
Aligned: 561
Modelled: 576
Confidence: 100.0%
Identity: 21%
Fold: Acetyl-CoA synthetase-like
Superfamily: Acetyl-CoA synthetase-like
Family: Acetyl-CoA synthetase-like

Phyre2

PDB 1ry2 chain A

3D model

Region: 425 - 966
Aligned: 526
Modelled: 540
Confidence: 100.0%
Identity: 22%
Fold: Acetyl-CoA synthetase-like
Superfamily: Acetyl-CoA synthetase-like
Family: Acetyl-CoA synthetase-like

Phyre2

PDB 3tsy chain A

3D model

Region: 447 - 986
Aligned: 515
Modelled: 527
Confidence: 100.0%
Identity: 16%
PDB header:ligase, transferase
Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol
PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein

Phyre2

PDB 3e7w chain A

3D model

Region: 456 - 969
Aligned: 500
Modelled: 514
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1;
PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains

Phyre2

PDB 3cw9 chain A domain 1

3D model

Region: 455 - 961
Aligned: 485
Modelled: 507
Confidence: 100.0%
Identity: 26%
Fold: Acetyl-CoA synthetase-like
Superfamily: Acetyl-CoA synthetase-like
Family: Acetyl-CoA synthetase-like

Phyre2

PDB 1mdb chain A

3D model

Region: 450 - 965
Aligned: 492
Modelled: 516
Confidence: 100.0%
Identity: 22%
Fold: Acetyl-CoA synthetase-like
Superfamily: Acetyl-CoA synthetase-like
Family: Acetyl-CoA synthetase-like

Phyre2

PDB 3ni2 chain A

3D model

Region: 438 - 960
Aligned: 505
Modelled: 523
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:4-coumarate:coa ligase;
PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase

Phyre2

PDB 3etc chain B

3D model

Region: 455 - 947
Aligned: 470
Modelled: 493
Confidence: 100.0%
Identity: 19%
PDB header:ligase
Chain: B: PDB Molecule:amp-binding protein;
PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298

Phyre2

PDB 1amu chain A

3D model

Region: 435 - 964
Aligned: 503
Modelled: 530
Confidence: 100.0%
Identity: 31%
Fold: Acetyl-CoA synthetase-like
Superfamily: Acetyl-CoA synthetase-like
Family: Acetyl-CoA synthetase-like

Phyre2

PDB 3ite chain B

3D model

Region: 456 - 959
Aligned: 475
Modelled: 504
Confidence: 100.0%
Identity: 27%
PDB header:ligase
Chain: B: PDB Molecule:sidn siderophore synthetase;
PDBTitle: the third adenylation domain of the fungal sidn non-2 ribosomal peptide synthetase

Phyre2

PDB 1amu chain B

3D model

Region: 434 - 964
Aligned: 506
Modelled: 531
Confidence: 100.0%
Identity: 30%
PDB header:peptide synthetase
Chain: B: PDB Molecule:gramicidin synthetase 1;
PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine

Phyre2

PDB 3gqw chain B

3D model

Region: 448 - 965
Aligned: 502
Modelled: 516
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: B: PDB Molecule:fatty acid amp ligase;
PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound

Phyre2

PDB 3kxw chain A

3D model

Region: 448 - 971
Aligned: 516
Modelled: 524
Confidence: 100.0%
Identity: 17%
PDB header:ligase
Chain: A: PDB Molecule:saframycin mx1 synthetase b;
PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila

Phyre2

PDB 3eyn chain B

3D model

Region: 458 - 962
Aligned: 482
Modelled: 505
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a;
PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa

Phyre2

PDB 2v7b chain B

3D model

Region: 456 - 960
Aligned: 478
Modelled: 505
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: B: PDB Molecule:benzoate-coenzyme a ligase;
PDBTitle: crystal structures of a benzoate coa ligase from2 burkholderia xenovorans lb400

Phyre2

PDB 2d1t chain A

3D model

Region: 439 - 965
Aligned: 502
Modelled: 527
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferin 4-monooxygenase;
PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue

Phyre2

PDB 3nyr chain A

3D model

Region: 457 - 947
Aligned: 457
Modelled: 491
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:malonyl-coa ligase;
PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound

Phyre2

PDB 3dhv chain A

3D model

Region: 457 - 964
Aligned: 489
Modelled: 508
Confidence: 100.0%
Identity: 26%
PDB header:ligase
Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase;
PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate

Phyre2

PDB 1v25 chain A

3D model

Region: 447 - 934
Aligned: 460
Modelled: 487
Confidence: 100.0%
Identity: 23%
Fold: Acetyl-CoA synthetase-like
Superfamily: Acetyl-CoA synthetase-like
Family: Acetyl-CoA synthetase-like

Phyre2
1

c2vsqA_
2

d1pg4a_
3

d1ry2a_
4

c3tsyA_
5

c3e7wA_
6

d3cw9a1
7

d1mdba_
8

c3ni2A_
9

c3etcB_
10

d1amua_
11

c3iteB_
12

c1amuB_
13

c3gqwB_
14

c3kxwA_
15

c3eynB_
16

c2v7bB_
17

c2d1tA_
18

c3nyrA_
19

c3dhvA_
20

d1v25a_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vsqA_



100.0 23 PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module
2d1pg4a_



100.0 21 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
3d1ry2a_



100.0 22 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
4c3tsyA_



100.0 16 PDB header:ligase, transferase
Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol
PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein
5c3e7wA_



100.0 24 PDB header:ligase
Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1;
PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains
6d3cw9a1



100.0 26 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
7d1mdba_



100.0 22 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
8c3ni2A_



100.0 20 PDB header:ligase
Chain: A: PDB Molecule:4-coumarate:coa ligase;
PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase
9c3etcB_



100.0 19 PDB header:ligase
Chain: B: PDB Molecule:amp-binding protein;
PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298
10d1amua_



100.0 31 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
11c3iteB_



100.0 27 PDB header:ligase
Chain: B: PDB Molecule:sidn siderophore synthetase;
PDBTitle: the third adenylation domain of the fungal sidn non-2 ribosomal peptide synthetase
12c1amuB_



100.0 30 PDB header:peptide synthetase
Chain: B: PDB Molecule:gramicidin synthetase 1;
PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine
13c3gqwB_



100.0 20 PDB header:ligase
Chain: B: PDB Molecule:fatty acid amp ligase;
PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound
14c3kxwA_



100.0 17 PDB header:ligase
Chain: A: PDB Molecule:saframycin mx1 synthetase b;
PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila
15c3eynB_



100.0 21 PDB header:ligase
Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a;
PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa
16c2v7bB_



100.0 21 PDB header:ligase
Chain: B: PDB Molecule:benzoate-coenzyme a ligase;
PDBTitle: crystal structures of a benzoate coa ligase from2 burkholderia xenovorans lb400
17c2d1tA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferin 4-monooxygenase;
PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue
18c3nyrA_



100.0 24 PDB header:ligase
Chain: A: PDB Molecule:malonyl-coa ligase;
PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound
19c3dhvA_



100.0 26 PDB header:ligase
Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase;
PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate
20d1v25a_



100.0 23 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
21c3g7sA_



not modelled 100.0 19 PDB header:ligase
Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1);
PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus
22c3iplB_



not modelled 100.0 20 PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: crystal structure of o-succinylbenzoic acid-coa ligase from2 staphylococcus aureus subsp. aureus mu50
23c3l8cA_



not modelled 100.0 24 PDB header:ligase
Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1;
PDBTitle: structure of probable d-alanine--poly(phosphoribitol) ligase2 subunit-1 from streptococcus pyogenes
24d1lcia_



not modelled 100.0 14 Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
25c1l5aA_



not modelled 100.0 25 PDB header:biosynthetic protein
Chain: A: PDB Molecule:amide synthase;
PDBTitle: crystal structure of vibh, an nrps condensation enzyme
26c2jgpA_



not modelled 100.0 16 PDB header:ligase
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine2 synthetase tycc
27c3o82B_



not modelled 100.0 20 PDB header:ligase
Chain: B: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
28c3o82A_



not modelled 100.0 21 PDB header:ligase
Chain: A: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
29c2xhgA_



not modelled 100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:tyrocidine synthetase a;
PDBTitle: crystal structure of the epimerization domain from the initiation2 module of tyrocidine biosynthesis
30c3ivrA_



not modelled 100.0 21 PDB header:ligase
Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase;
PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009
31c2roqA_



not modelled 100.0 100 PDB header:transferase
Chain: A: PDB Molecule:enterobactin synthetase component f;
PDBTitle: solution structure of the thiolation-thioesterase di-domain2 of enterobactin synthetase component f
32c3e53A_



not modelled 100.0 21 PDB header:ligase
Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28;
PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis
33c2y4oA_



not modelled 100.0 18 PDB header:ligase
Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate
34c2y27B_



not modelled 100.0 18 PDB header:ligase
Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia
35c3qovD_



not modelled 100.0 16 PDB header:ligase
Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
36c3fotA_



not modelled 100.0 8 PDB header:transferase
Chain: A: PDB Molecule:15-o-acetyltransferase;
PDBTitle: structural and functional characterization of tri3 trichothecene 15-o-2 acetyltransferase from fusarium sporotrichioides
37d1jmkc_



not modelled 100.0 17 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
38c1q9jA_



not modelled 100.0 15 PDB header:ligase
Chain: A: PDB Molecule:polyketide synthase associated protein 5;
PDBTitle: structure of polyketide synthase associated protein 5 from2 mycobacterium tuberculosis
39c2cbgA_



not modelled 100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:fengycin synthetase;
PDBTitle: crystal structure of the pmsf-inhibited thioesterase domain2 of the fengycin biosynthesis cluster
40c1mo2A_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:erythronolide synthase, modules 5 and 6;
PDBTitle: thioesterase domain from 6-deoxyerythronolide synthase2 (debs te), ph 8.5
41d1mo2a_



not modelled 100.0 18 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
42c3lcrA_



not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:tautomycetin biosynthetic pks;
PDBTitle: thioesterase from tautomycetin biosynthhetic pathway
43d2h7xa1



not modelled 100.0 19 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
44c2h7xA_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:type i polyketide synthase pikaiv;
PDBTitle: pikromycin thioesterase adduct with reduced triketide2 affinity label
45d1l5aa1



not modelled 100.0 25 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
46d1l5aa2



not modelled 100.0 24 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
47c3hguB_



not modelled 100.0 18 PDB header:biosynthetic protein
Chain: B: PDB Molecule:ehpf;
PDBTitle: structure of phenazine antibiotic biosynthesis protein
48d1xkta_



not modelled 100.0 21 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
49c2px6A_



not modelled 99.9 20 PDB header:transferase
Chain: A: PDB Molecule:thioesterase domain;
PDBTitle: crystal structure of the thioesterase domain of human fatty2 acid synthase inhibited by orlistat
50c3ilsA_



not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:aflatoxin biosynthesis polyketide synthase;
PDBTitle: the thioesterase domain from pksa
51c3qmwD_



not modelled 99.9 19 PDB header:hydrolase
Chain: D: PDB Molecule:thioesterase;
PDBTitle: redj with peg molecule bound in the active site
52d1q9ja1



not modelled 99.9 19 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
53c3flaB_



not modelled 99.9 16 PDB header:hydrolase
Chain: B: PDB Molecule:rifr;
PDBTitle: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic2 pathway - form 1
54c2ronA_



not modelled 99.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:surfactin synthetase thioesterase subunit;
PDBTitle: the external thioesterase of the surfactin-synthetase
55c2cq8A_



not modelled 99.7 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: solution structure of rsgi ruh-033, a pp-binding domain of2 10-fthfdh from human cdna
56d1q9ja2



not modelled 99.7 13 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
57c1cr6A_



not modelled 99.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor
58c2bghA_



not modelled 99.7 14 PDB header:transferase
Chain: A: PDB Molecule:vinorine synthase;
PDBTitle: crystal structure of vinorine synthase
59c2e1uA_



not modelled 99.7 12 PDB header:transferase
Chain: A: PDB Molecule:acyl transferase;
PDBTitle: crystal structure of dendranthema morifolium dmat
60d2gdwa1



not modelled 99.6 29 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Peptidyl carrier domain
61c3v48B_



not modelled 99.6 13 PDB header:hydrolase
Chain: B: PDB Molecule:putative aminoacrylate hydrolase rutd;
PDBTitle: crystal structure of the putative alpha/beta hydrolase rutd from2 e.coli
62c1y37A_



not modelled 99.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:fluoroacetate dehalogenase;
PDBTitle: structure of fluoroacetate dehalogenase from burkholderia sp. fa1
63c3l80A_



not modelled 99.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c;
PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159
64c3qvmA_



not modelled 99.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:olei00960;
PDBTitle: the structure of olei00960, a hydrolase from oleispira antarctica
65c3om8A_



not modelled 99.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:probable hydrolase;
PDBTitle: the crystal structure of a hydrolase from pseudomonas aeruginosa pa01
66d2vata1



not modelled 99.5 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:O-acetyltransferase
67c2qmqA_



not modelled 99.5 12 PDB header:signaling protein
Chain: A: PDB Molecule:protein ndrg2;
PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution
68c2y6vB_



not modelled 99.5 10 PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal membrane protein lpx1;
PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i)
69c2vavL_



not modelled 99.5 12 PDB header:transferase
Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c
PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak)
70c3oosA_



not modelled 99.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha/beta hydrolase family protein;
PDBTitle: the structure of an alpha/beta fold family hydrolase from bacillus2 anthracis str. sterne
71c2xuaH_



not modelled 99.5 12 PDB header:hydrolase
Chain: H: PDB Molecule:3-oxoadipate enol-lactonase;
PDBTitle: crystal structure of the enol-lactonase from burkholderia2 xenovorans lb400
72c2r11D_



not modelled 99.5 9 PDB header:hydrolase
Chain: D: PDB Molecule:carboxylesterase np;
PDBTitle: crystal structure of putative hydrolase (2632844) from2 bacillus subtilis at 1.96 a resolution
73c3kdaB_



not modelled 99.5 12 PDB header:hydrolase
Chain: B: PDB Molecule:cftr inhibitory factor (cif);
PDBTitle: crystal structure of the cftr inhibitory factor cif with the h269a2 mutation
74c3ibtA_



not modelled 99.5 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:1h-3-hydroxy-4-oxoquinoline 2,4-dioxygenase;
PDBTitle: structure of 1h-3-hydroxy-4-oxoquinoline 2,4-dioxygenase (qdo)
75c3e0xB_



not modelled 99.4 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lipase-esterase related protein;
PDBTitle: the crystal structure of a lipase-esterase related protein2 from clostridium acetobutylicum atcc 824
76c2wj4B_



not modelled 99.4 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:1h-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase;
PDBTitle: crystal structure of the cofactor-devoid 1-h-3-hydroxy-4-2 oxoquinaldine 2,4-dioxygenase (hod) from arthrobacter3 nitroguajacolicus ru61a anaerobically complexed with its4 natural substrate 1-h-3-hydroxy-4-oxoquinaldine
77c2fq1A_



not modelled 99.4 22 PDB header:hydrolase
Chain: A: PDB Molecule:isochorismatase;
PDBTitle: crystal structure of the two-domain non-ribosomal peptide synthetase2 entb containing isochorismate lyase and aryl-carrier protein domains
78c3i1iA_



not modelled 99.4 16 PDB header:transferase
Chain: A: PDB Molecule:homoserine o-acetyltransferase;
PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis
79c3fsgC_



not modelled 99.4 17 PDB header:hydrolase
Chain: C: PDB Molecule:alpha/beta superfamily hydrolase;
PDBTitle: crystal structure of alpha/beta superfamily hydrolase from oenococcus2 oeni psu-1
80d1mj5a_



not modelled 99.4 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloalkane dehalogenase
81d2b61a1



not modelled 99.4 16 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:O-acetyltransferase
82c3bf7B_



not modelled 99.4 13 PDB header:hydrolase
Chain: B: PDB Molecule:esterase ybff;
PDBTitle: 1.1 resolution structure of ybff, a new esterase from2 escherichia coli: a unique substrate-binding crevice3 generated by domain arrangement
83d1m33a_



not modelled 99.4 16 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Biotin biosynthesis protein BioH
84c2cjpA_



not modelled 99.4 12 PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: structure of potato (solanum tuberosum) epoxide hydrolase i2 (steh1)
85c2ju2A_



not modelled 99.4 25 PDB header:transferase
Chain: A: PDB Molecule:erythronolide synthase;
PDBTitle: minimized mean solution structure of the acyl carrier2 protein domain from module 2 of 6-deoxyerythronolide b3 synthase (debs)
86d1ehya_



not modelled 99.4 17 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Epoxide hydrolase
87c2liuA_



not modelled 99.3 11 PDB header:transferase
Chain: A: PDB Molecule:cura;
PDBTitle: nmr structure of holo-acpi domain from cura module from lyngbya2 majuscula
88d1a8qa_



not modelled 99.3 15 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloperoxidase
89d1e89a_



not modelled 99.3 11 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Hydroxynitrile lyase-like
90d1hlga_



not modelled 99.3 11 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Gastric lipase
91d1hkha_



not modelled 99.3 15 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloperoxidase
92d2pl5a1



not modelled 99.3 11 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:O-acetyltransferase
93d1cr6a2



not modelled 99.3 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Epoxide hydrolase
94d1mtza_



not modelled 99.3 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Proline iminopeptidase-like
95d1zd3a2



not modelled 99.3 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Epoxide hydrolase
96c2pseA_



not modelled 99.3 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:renilla-luciferin 2-monooxygenase;
PDBTitle: crystal structures of the luciferase and green fluorescent2 protein from renilla reniformis
97c3kxpD_



not modelled 99.2 15 PDB header:hydrolase
Chain: D: PDB Molecule:alpha-(n-acetylaminomethylene)succinic acid
PDBTitle: crystal structure of e-2-(acetamidomethylene)succinate2 hydrolase
98d1k8qa_



not modelled 99.2 16 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Gastric lipase
99c3bwxA_



not modelled 99.2 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha/beta hydrolase;
PDBTitle: crystal structure of an alpha/beta hydrolase (yp_496220.1) from2 novosphingobium aromaticivorans dsm 12444 at 1.50 a resolution
100c2xr7A_



not modelled 99.2 10 PDB header:transferase
Chain: A: PDB Molecule:malonyltransferase;
PDBTitle: crystal structure of nicotiana tabacum malonyltransferase (ntmat1)2 complexed with malonyl-coa
101c2xmzA_



not modelled 99.2 14 PDB header:lyase
Chain: A: PDB Molecule:hydrolase, alpha/beta hydrolase fold family;
PDBTitle: structure of menh from s. aureus
102d1brta_



not modelled 99.2 14 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloperoxidase
103c2afdA_



not modelled 99.2 20 PDB header:ligand binding protein
Chain: A: PDB Molecule:protein asl1650;
PDBTitle: solution structure of asl1650, an acyl carrier protein from anabaena2 sp. pcc 7120 with a variant phosphopantetheinylation-site sequence
104c3r3xA_



not modelled 99.2 12 PDB header:hydrolase
Chain: A: PDB Molecule:fluoroacetate dehalogenase;
PDBTitle: crystal structure of the fluoroacetate dehalogenase rpa1163 -2 asp110asn/bromoacetate
105c3laxA_



not modelled 99.2 16 PDB header:ligase
Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase;
PDBTitle: the crystal structure of a domain of phenylacetate-coenzyme2 a ligase from bacteroides vulgatus atcc 8482
106c1u2eA_



not modelled 99.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:2-hydroxy-6-ketonona-2,4-dienedioic acid
PDBTitle: crystal structure of the c-c bond hydrolase mhpc
107d3c70a1



not modelled 99.2 13 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Hydroxynitrile lyase-like
108c3r0vA_



not modelled 99.2 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha/beta hydrolase fold protein;
PDBTitle: the crystal structure of an alpha/beta hydrolase from sphaerobacter2 thermophilus dsm 20745.
109d1a8sa_



not modelled 99.2 15 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloperoxidase
110d1xkla_



not modelled 99.2 12 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Hydroxynitrile lyase-like
111d2rhwa1



not modelled 99.2 17 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carbon-carbon bond hydrolase
112c3fobA_



not modelled 99.2 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:bromoperoxidase;
PDBTitle: crystal structure of bromoperoxidase from bacillus anthracis
113d1c4xa_



not modelled 99.1 12 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Carbon-carbon bond hydrolase
114d1va4a_



not modelled 99.1 13 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Haloperoxidase
115c3e3aA_



not modelled 99.1 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:possible peroxidase bpoc;
PDBTitle: the structure of rv0554 from mycobacterium tuberculosis
116c3u1tA_



not modelled 99.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:dmma haloalkane dehalogenase;
PDBTitle: haloalkane dehalogenase, dmma, of marine microbial origin
117c3qyjB_



not modelled 99.1 14 PDB header:hydrolase
Chain: B: PDB Molecule:alr0039 protein;
PDBTitle: crystal structure of alr0039, a putative alpha/beta hydrolase from2 nostoc sp pcc 7120.
118d1qo7a_



not modelled 99.1 11 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Epoxide hydrolase
119d1ispa_



not modelled 99.1 15 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
120c2qvbA_



not modelled 99.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:haloalkane dehalogenase 3;
PDBTitle: crystal structure of haloalkane dehalogenase rv2579 from mycobacterium2 tuberculosis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0