Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	F	E	L	P	A	L	P	Y	A	K	D	A	L	A	P	H	I	S	A	E	T	I	E	Y	H	Y	G	K	H	H	Q	T	Y	V	T	N	L	N	N	L	I	K	G	T	A	F	E	G	K	S	L	E	E	I	I	R	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	G	G	V	F	N	N	A	A	Q	V	W	N	H	T	F	Y	W	N	C	L	A	P	N	A	G	G	E	P	T	G	K	V	A	E	A	I	A	A	S	F	G	S	F	A	D	F	K	A	Q	F	T	D	A	A	I	K	N	F	G
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	G	W	T	W	L	V	K	N	S	D	G	K	L	A	I	V	S	T	S	N	A	G	T	P	L	T	T	D	A	T	P	L	L	T	V	D	V	W	E	H	A	Y	Y	I	D	Y	R	N	A	R	P	G	Y	L	E	H	F	W	A
Secondary structure
SS confidence
Disorder																																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.
Sequence		L	V	N	W	E	F	V	A	K	N	L	A	A
Secondary structure
SS confidence
Disorder											?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2nyb chain C Region: 2 - 193 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 99% PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [fe]; PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution Phyre2 PDB 3tqj chain B Region: 2 - 193 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 61% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [fe]; PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii Phyre2 PDB 3h1s chain B Region: 1 - 192 Aligned: 191 Modelled: 192 Confidence: 100.0% Identity: 66% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4 Phyre2 PDB 1dt0 chain A Region: 2 - 193 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 68% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis Phyre2 PDB 1gv3 chain B Region: 1 - 193 Aligned: 193 Modelled: 193 Confidence: 100.0% Identity: 45% PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase Phyre2 PDB 2a03 chain A Region: 1 - 193 Aligned: 193 Modelled: 193 Confidence: 100.0% Identity: 53% PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei Phyre2 PDB 1mng chain A Region: 1 - 193 Aligned: 193 Modelled: 193 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase(superoxide acceptor) Chain: A: PDB Molecule:manganese superoxide dismutase; PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus Phyre2 PDB 1qnn chain D Region: 2 - 191 Aligned: 190 Modelled: 190 Confidence: 100.0% Identity: 51% PDB header:oxidoreductase Chain: D: PDB Molecule:superoxide dismutase; PDBTitle: cambialistic superoxide dismutase from porphyromonas2 gingivalis Phyre2 PDB 3lj9 chain A Region: 2 - 192 Aligned: 191 Modelled: 191 Confidence: 100.0% Identity: 70% PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of the iron superoxide dismutase from2 pseudoalteromonas haloplanktis in complex with sodium azide Phyre2 PDB 1my6 chain A Region: 2 - 193 Aligned: 191 Modelled: 192 Confidence: 100.0% Identity: 57% PDB header:oxidoreductase Chain: A: PDB Molecule:iron (iii) superoxide dismutase; PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics Phyre2 PDB 1xre chain B Region: 2 - 193 Aligned: 191 Modelled: 192 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution. Phyre2 PDB 3cei chain A Region: 3 - 193 Aligned: 190 Modelled: 191 Confidence: 100.0% Identity: 53% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori Phyre2 PDB 2cw2 chain B Region: 2 - 193 Aligned: 191 Modelled: 192 Confidence: 100.0% Identity: 57% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase 1; PDBTitle: crystal structure of superoxide dismutase from p. marinus Phyre2 PDB 1gn4 chain B Region: 2 - 193 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 40% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase. Phyre2 PDB 2rcv chain A Region: 2 - 192 Aligned: 190 Modelled: 191 Confidence: 100.0% Identity: 54% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase Phyre2 PDB 1ma1 chain E Region: 3 - 193 Aligned: 191 Modelled: 191 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum Phyre2 PDB 1y67 chain D Region: 2 - 193 Aligned: 191 Modelled: 192 Confidence: 100.0% Identity: 51% PDB header:oxidoreductase Chain: D: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans Phyre2 PDB 1p7g chain L Region: 1 - 193 Aligned: 193 Modelled: 193 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum Phyre2 PDB 3js4 chain C Region: 3 - 193 Aligned: 189 Modelled: 191 Confidence: 100.0% Identity: 50% PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum Phyre2 PDB 1avm chain A Region: 3 - 193 Aligned: 191 Modelled: 191 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide Phyre2 1 c2nybC_ 2 c3tqjB_ 3 c3h1sB_ 4 c1dt0A_ 5 c1gv3B_ 6 c2a03A_ 7 c1mngA_ 8 c1qnnD_ 9 c3lj9A_ 10 c1my6A_ 11 c1xreB_ 12 c3ceiA_ 13 c2cw2B_ 14 c1gn4B_ 15 c2rcvA_ 16 c1ma1E_ 17 c1y67D_ 18 c1p7gL_ 19 c3js4C_ 20 c1avmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2nybC_ 100.0 99 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [fe]; PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution 2 c3tqjB_ 100.0 61 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [fe]; PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii 3 c3h1sB_ 100.0 66 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4 4 c1dt0A_ 100.0 68 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis 5 c1gv3B_ 100.0 45 PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase 6 c2a03A_ 100.0 53 PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei 7 c1mngA_ 100.0 41 PDB header:oxidoreductase(superoxide acceptor) Chain: A: PDB Molecule:manganese superoxide dismutase; PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus 8 c1qnnD_ 100.0 51 PDB header:oxidoreductase Chain: D: PDB Molecule:superoxide dismutase; PDBTitle: cambialistic superoxide dismutase from porphyromonas2 gingivalis 9 c3lj9A_ 100.0 70 PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of the iron superoxide dismutase from2 pseudoalteromonas haloplanktis in complex with sodium azide 10 c1my6A_ 100.0 57 PDB header:oxidoreductase Chain: A: PDB Molecule:iron (iii) superoxide dismutase; PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics 11 c1xreB_ 100.0 43 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution. 12 c3ceiA_ 100.0 53 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori 13 c2cw2B_ 100.0 57 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase 1; PDBTitle: crystal structure of superoxide dismutase from p. marinus 14 c1gn4B_ 100.0 40 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase. 15 c2rcvA_ 100.0 54 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase 16 c1ma1E_ 100.0 41 PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum 17 c1y67D_ 100.0 51 PDB header:oxidoreductase Chain: D: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans 18 c1p7gL_ 100.0 39 PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum 19 c3js4C_ 100.0 50 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum 20 c1avmA_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide 21 c1en4C_ not modelled 100.0 45 PDB header:oxidoreductase Chain: C: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure analysis of the e. coli manganese2 superoxide dismutase q146h mutant 22 c1n0nB_ not modelled 100.0 41 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [mn]; PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase 23 c1b06A_ not modelled 100.0 37 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: superoxide dismutase from sulfolobus acidocaldarius 24 c1unfX_ not modelled 100.0 50 PDB header:oxidoreductase Chain: X: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the eukaryotic fesod from vigna2 unguiculata suggests a new enzymatic mechanism 25 c1kkcB_ not modelled 100.0 37 PDB header:oxidoreductase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of aspergillus fumigatus mnsod 26 c2gpcB_ not modelled 100.0 54 PDB header:oxidoreductase Chain: B: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi 27 c2cw3A_ not modelled 100.0 40 PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of pmsod2, superoxide dismutase from2 perkinsus marinus 28 c3bfrA_ not modelled 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: the crystal structure of sod2 from saccharomyces cerevisiae 29 c3dc5C_ not modelled 100.0 35 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [mn] 2; PDBTitle: crystal structure of a manganese superoxide dismutases from2 caenorhabditis elegans 30 c1cojA_ not modelled 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: fe-sod from aquifex pyrophilus, a hyperthermophilic bacterium 31 d2nyba2 not modelled 100.0 100 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 32 d1gv3a2 not modelled 100.0 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 33 d1mnga2 not modelled 100.0 42 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 34 d1b06a2 not modelled 100.0 38 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 35 d1idsa2 not modelled 100.0 43 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 36 d1wb8a2 not modelled 100.0 35 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 37 d1dt0a2 not modelled 100.0 63 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 38 d1my6a2 not modelled 100.0 58 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 39 d1uera2 not modelled 100.0 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 40 d2p4ka2 not modelled 100.0 48 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 41 d1ma1a2 not modelled 100.0 46 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 42 d1p7ga2 not modelled 100.0 42 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 43 d1jr9a2 not modelled 100.0 49 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 44 d1bsma2 not modelled 100.0 38 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 45 d1unfx2 not modelled 100.0 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 46 d1ix9a2 not modelled 100.0 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 47 d1y67a2 not modelled 100.0 56 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 48 d1kkca2 not modelled 100.0 35 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 49 d1coja2 not modelled 100.0 29 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 50 d3sdpa2 not modelled 100.0 65 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 51 d1uerc2 not modelled 100.0 48 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 52 d1uera1 not modelled 100.0 57 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 53 d1dt0a1 not modelled 100.0 75 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 54 d2nyba1 not modelled 100.0 99 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 55 d1p7ga1 not modelled 100.0 33 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 56 d1mnga1 not modelled 100.0 41 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 57 d1gv3a1 not modelled 100.0 43 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 58 d1my6a1 not modelled 100.0 56 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 59 d1jr9a1 not modelled 100.0 45 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 60 d1bsma1 not modelled 100.0 35 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 61 d1idsa1 not modelled 100.0 35 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 62 d2p4ka1 not modelled 100.0 32 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 63 d1ix9a1 not modelled 100.0 43 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 64 d1ma1a1 not modelled 100.0 34 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 65 d1y67a1 not modelled 100.0 46 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 66 d1kkca1 not modelled 100.0 37 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 67 d1wb8a1 not modelled 100.0 36 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 68 d1unfx1 not modelled 100.0 54 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 69 d1b06a1 not modelled 100.0 35 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 70 d3sdpa1 not modelled 100.0 77 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 71 d1coja1 not modelled 99.9 31 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 72 d2gykb1 not modelled 61.6 27 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 73 d2jb0b1 not modelled 47.9 32 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 74 c7ceiB_ not modelled 45.4 32 PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein 75 d1kfta_ not modelled 28.6 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 76 c1kftA_ not modelled 28.6 12 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 77 d2a1jb1 not modelled 21.4 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 78 c1wqsA_ not modelled 19.1 47 PDB header:hydrolase Chain: A: PDB Molecule:3c-like protease; PDBTitle: crystal structure of norovirus 3c-like protease 79 c2jesG_ not modelled 19.0 11 PDB header:viral protein Chain: G: PDB Molecule:portal protein; PDBTitle: portal protein from bacteriophage spp1 80 d1t1ua1 not modelled 17.6 26 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 81 d2bgwa1 not modelled 16.9 30 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 82 d1x2ia1 not modelled 16.8 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 83 d1xl7a1 not modelled 15.8 27 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 84 d3cjsb1 not modelled 14.4 18 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 85 c2rnnA_ not modelled 14.3 17 PDB header:ligase Chain: A: PDB Molecule:e3 sumo-protein ligase siz1; PDBTitle: solution structure of the n-terminal sap domain of sumo e3 ligases2 from saccharomyces cerevisiae 86 c1xl8B_ not modelled 13.4 27 PDB header:transferase Chain: B: PDB Molecule:peroxisomal carnitine o-octanoyltransferase; PDBTitle: crystal structure of mouse carnitine octanoyltransferase in2 complex with octanoylcarnitine 87 c1skoA_ not modelled 12.8 24 PDB header:signaling protein Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1 PDBTitle: mp1-p14 complex 88 d1nm8a1 not modelled 12.7 41 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 89 d1ndba1 not modelled 12.0 41 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 90 c2fy2A_ not modelled 11.7 32 PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: structures of ligand bound human choline acetyltransferase2 provide insight into regulation of acetylcholine synthesis 91 c3cjtP_ not modelled 11.7 18 PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 92 c2h4tB_ not modelled 10.8 27 PDB header:transferase Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii 93 d2dlka1 not modelled 10.5 16 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 94 c1t7qA_ not modelled 10.5 41 PDB header:transferase Chain: A: PDB Molecule:carnitine acetyltransferase; PDBTitle: crystal structure of the f565a mutant of murine carnitine2 acetyltransferase in complex with carnitine and coa 95 c2nrzB_ not modelled 9.9 15 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 96 d2hu7a1 not modelled 8.9 50 Fold:7-bladed beta-propeller Superfamily:Peptidase/esterase 'gauge' domain Family:Acylamino-acid-releasing enzyme, N-terminal donain 97 d1mmsa2 not modelled 8.4 18 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 98 c2fyoA_ not modelled 8.3 27 PDB header:transferase Chain: A: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase 22 in space group p43212 99 c1q6xA_ not modelled 8.2 27 PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: crystal structure of rat choline acetyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0