Phyre 2 alignment of P0AGD3 with c1wqsA_

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Job Description | P0AGD3
Confidence | 19.05% | Date | Thu Jan 5 11:28:49 GMT 2012
Rank | 78 | Aligned Residues | 19
% Identity | 47% | Template | c1wqsA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:3c-like protease; | PDBTitle: crystal structure of norovirus 3c-like protease
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | G | S | G | W | T | W | L | V | K | N | S | D | G | K | L | A | I | V | S | T | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Template Sequence |  | F | G | S | G | W | G | F | W | V | S | . | . | . | P | T | V | F | I | T | T | T | H
Template Known Secondary structure |  |  | S | S | S |  |  |  |  | S | S | . | . | . | S | S |  |  |  |  |  | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 12 | . | . | . | . | . | . | . | 20 | . |  |  |  | . | . | . | . | . | . | . | . | 30

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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