Phyre 2 Results for P0AGD3

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Email | l.a.kelley@imperial.ac.uk
Description | P0AGD3
Date | Thu Jan 5 11:28:49 GMT 2012
Unique Job ID | 17eba90f25ca5d46

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2nybC_
Top template information
PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [fe]; PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
192 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | F | E | L | P | A | L | P | Y | A | K | D | A | L | A | P | H | I | S | A | E | T | I | E | Y | H | Y | G | K | H | H | Q | T | Y | V | T | N | L | N | N | L | I | K | G | T | A | F | E | G | K | S | L | E | E | I | I | R | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | G | G | V | F | N | N | A | A | Q | V | W | N | H | T | F | Y | W | N | C | L | A | P | N | A | G | G | E | P | T | G | K | V | A | E | A | I | A | A | S | F | G | S | F | A | D | F | K | A | Q | F | T | D | A | A | I | K | N | F | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | S | G | W | T | W | L | V | K | N | S | D | G | K | L | A | I | V | S | T | S | N | A | G | T | P | L | T | T | D | A | T | P | L | L | T | V | D | V | W | E | H | A | Y | Y | I | D | Y | R | N | A | R | P | G | Y | L | E | H | F | W | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | .
Sequence |  | L | V | N | W | E | F | V | A | K | N | L | A | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2nybC_ |

### PDB 2nyb chain C

Region: 2 - 193
Aligned: 192
Modelled: 192
Confidence: 100.0%
Identity: 99%
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase [fe];
PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution

Phyre2
2 |
| c3tqjB_ |

### PDB 3tqj chain B

Region: 2 - 193
Aligned: 192
Modelled: 192
Confidence: 100.0%
Identity: 61%
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [fe];
PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii

Phyre2
3 |
| c3h1sB_ |

### PDB 3h1s chain B

Region: 1 - 192
Aligned: 191
Modelled: 192
Confidence: 100.0%
Identity: 66%
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4

Phyre2
4 |
| c1dt0A_ |

### PDB 1dt0 chain A

Region: 2 - 193
Aligned: 192
Modelled: 192
Confidence: 100.0%
Identity: 68%
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis

Phyre2
5 |
| c1gv3B_ |

### PDB 1gv3 chain B

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 45%
PDB header:manganese superoxide dismutase
Chain: B: PDB Molecule:manganese superoxide dismutase;
PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase

Phyre2
6 |
| c2a03A_ |

### PDB 2a03 chain A

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 53%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fe-superoxide dismutase homolog;
PDBTitle: superoxide dismutase protein from plasmodium berghei

Phyre2
7 |
| c1mngA_ |

### PDB 1mng chain A

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 41%
PDB header:oxidoreductase(superoxide acceptor)
Chain: A: PDB Molecule:manganese superoxide dismutase;
PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus

Phyre2
8 |
| c1qnnD_ |

### PDB 1qnn chain D

Region: 2 - 191
Aligned: 190
Modelled: 190
Confidence: 100.0%
Identity: 51%
PDB header:oxidoreductase
Chain: D: PDB Molecule:superoxide dismutase;
PDBTitle: cambialistic superoxide dismutase from porphyromonas2 gingivalis

Phyre2
9 |
| c3lj9A_ |

### PDB 3lj9 chain A

Region: 2 - 192
Aligned: 191
Modelled: 191
Confidence: 100.0%
Identity: 70%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron superoxide dismutase;
PDBTitle: x-ray structure of the iron superoxide dismutase from2 pseudoalteromonas haloplanktis in complex with sodium azide

Phyre2
10 |
| c1my6A_ |

### PDB 1my6 chain A

Region: 2 - 193
Aligned: 191
Modelled: 192
Confidence: 100.0%
Identity: 57%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron (iii) superoxide dismutase;
PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics

Phyre2
11 |
| c1xreB_ |

### PDB 1xre chain B

Region: 2 - 193
Aligned: 191
Modelled: 192
Confidence: 100.0%
Identity: 43%
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution.

Phyre2
12 |
| c3ceiA_ |

### PDB 3cei chain A

Region: 3 - 193
Aligned: 190
Modelled: 191
Confidence: 100.0%
Identity: 53%
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori

Phyre2
13 |
| c2cw2B_ |

### PDB 2cw2 chain B

Region: 2 - 193
Aligned: 191
Modelled: 192
Confidence: 100.0%
Identity: 57%
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase 1;
PDBTitle: crystal structure of superoxide dismutase from p. marinus

Phyre2
14 |
| c1gn4B_ |

### PDB 1gn4 chain B

Region: 2 - 193
Aligned: 192
Modelled: 192
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase.

Phyre2
15 |
| c2rcvA_ |

### PDB 2rcv chain A

Region: 2 - 192
Aligned: 190
Modelled: 191
Confidence: 100.0%
Identity: 54%
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [mn];
PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase

Phyre2
16 |
| c1ma1E_ |

### PDB 1ma1 chain E

Region: 3 - 193
Aligned: 191
Modelled: 191
Confidence: 100.0%
Identity: 41%
PDB header:oxidoreductase
Chain: E: PDB Molecule:superoxide dismutase;
PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum

Phyre2
17 |
| c1y67D_ |

### PDB 1y67 chain D

Region: 2 - 193
Aligned: 191
Modelled: 192
Confidence: 100.0%
Identity: 51%
PDB header:oxidoreductase
Chain: D: PDB Molecule:manganese superoxide dismutase;
PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans

Phyre2
18 |
| c1p7gL_ |

### PDB 1p7g chain L

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: L: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum

Phyre2
19 |
| c3js4C_ |

### PDB 3js4 chain C

Region: 3 - 193
Aligned: 189
Modelled: 191
Confidence: 100.0%
Identity: 50%
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum

Phyre2
20 |
| c1avmA_ |

### PDB 1avm chain A

Region: 3 - 193
Aligned: 191
Modelled: 191
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2nybC_ |
|  | 100.0 | 99 | PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [fe]; PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution
2 | c3tqjB_ |
|  | 100.0 | 61 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [fe]; PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii
3 | c3h1sB_ |
|  | 100.0 | 66 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4
4 | c1dt0A_ |
|  | 100.0 | 68 | PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis
5 | c1gv3B_ |
|  | 100.0 | 45 | PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase
6 | c2a03A_ |
|  | 100.0 | 53 | PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei
7 | c1mngA_ |
|  | 100.0 | 41 | PDB header:oxidoreductase(superoxide acceptor) Chain: A: PDB Molecule:manganese superoxide dismutase; PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus
8 | c1qnnD_ |
|  | 100.0 | 51 | PDB header:oxidoreductase Chain: D: PDB Molecule:superoxide dismutase; PDBTitle: cambialistic superoxide dismutase from porphyromonas2 gingivalis
9 | c3lj9A_ |
|  | 100.0 | 70 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of the iron superoxide dismutase from2 pseudoalteromonas haloplanktis in complex with sodium azide
10 | c1my6A_ |
|  | 100.0 | 57 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron (iii) superoxide dismutase; PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics
11 | c1xreB_ |
|  | 100.0 | 43 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution.
12 | c3ceiA_ |
|  | 100.0 | 53 | PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori
13 | c2cw2B_ |
|  | 100.0 | 57 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase 1; PDBTitle: crystal structure of superoxide dismutase from p. marinus
14 | c1gn4B_ |
|  | 100.0 | 40 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase.
15 | c2rcvA_ |
|  | 100.0 | 54 | PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase
16 | c1ma1E_ |
|  | 100.0 | 41 | PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum
17 | c1y67D_ |
|  | 100.0 | 51 | PDB header:oxidoreductase Chain: D: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans
18 | c1p7gL_ |
|  | 100.0 | 39 | PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum
19 | c3js4C_ |
|  | 100.0 | 50 | PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum
20 | c1avmA_ |
|  | 100.0 | 36 | PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide
21 | c1en4C_ |
| not modelled | 100.0 | 45 | PDB header:oxidoreductase Chain: C: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure analysis of the e. coli manganese2 superoxide dismutase q146h mutant
22 | c1n0nB_ |
| not modelled | 100.0 | 41 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [mn]; PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase
23 | c1b06A_ |
| not modelled | 100.0 | 37 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: superoxide dismutase from sulfolobus acidocaldarius
24 | c1unfX_ |
| not modelled | 100.0 | 50 | PDB header:oxidoreductase Chain: X: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the eukaryotic fesod from vigna2 unguiculata suggests a new enzymatic mechanism
25 | c1kkcB_ |
| not modelled | 100.0 | 37 | PDB header:oxidoreductase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of aspergillus fumigatus mnsod
26 | c2gpcB_ |
| not modelled | 100.0 | 54 | PDB header:oxidoreductase Chain: B: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi
27 | c2cw3A_ |
| not modelled | 100.0 | 40 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of pmsod2, superoxide dismutase from2 perkinsus marinus
28 | c3bfrA_ |
| not modelled | 100.0 | 36 | PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: the crystal structure of sod2 from saccharomyces cerevisiae
29 | c3dc5C_ |
| not modelled | 100.0 | 35 | PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [mn] 2; PDBTitle: crystal structure of a manganese superoxide dismutases from2 caenorhabditis elegans
30 | c1cojA_ |
| not modelled | 100.0 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: fe-sod from aquifex pyrophilus, a hyperthermophilic bacterium
31 | d2nyba2 |
| not modelled | 100.0 | 100 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
32 | d1gv3a2 |
| not modelled | 100.0 | 47 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
33 | d1mnga2 |
| not modelled | 100.0 | 42 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
34 | d1b06a2 |
| not modelled | 100.0 | 38 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
35 | d1idsa2 |
| not modelled | 100.0 | 43 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
36 | d1wb8a2 |
| not modelled | 100.0 | 35 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
37 | d1dt0a2 |
| not modelled | 100.0 | 63 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
38 | d1my6a2 |
| not modelled | 100.0 | 58 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
39 | d1uera2 |
| not modelled | 100.0 | 47 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
40 | d2p4ka2 |
| not modelled | 100.0 | 48 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
41 | d1ma1a2 |
| not modelled | 100.0 | 46 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
42 | d1p7ga2 |
| not modelled | 100.0 | 42 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
43 | d1jr9a2 |
| not modelled | 100.0 | 49 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
44 | d1bsma2 |
| not modelled | 100.0 | 38 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
45 | d1unfx2 |
| not modelled | 100.0 | 47 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
46 | d1ix9a2 |
| not modelled | 100.0 | 47 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
47 | d1y67a2 |
| not modelled | 100.0 | 56 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
48 | d1kkca2 |
| not modelled | 100.0 | 35 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
49 | d1coja2 |
| not modelled | 100.0 | 29 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
50 | d3sdpa2 |
| not modelled | 100.0 | 65 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
51 | d1uerc2 |
| not modelled | 100.0 | 48 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
52 | d1uera1 |
| not modelled | 100.0 | 57 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
53 | d1dt0a1 |
| not modelled | 100.0 | 75 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
54 | d2nyba1 |
| not modelled | 100.0 | 99 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
55 | d1p7ga1 |
| not modelled | 100.0 | 33 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
56 | d1mnga1 |
| not modelled | 100.0 | 41 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
57 | d1gv3a1 |
| not modelled | 100.0 | 43 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
58 | d1my6a1 |
| not modelled | 100.0 | 56 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
59 | d1jr9a1 |
| not modelled | 100.0 | 45 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
60 | d1bsma1 |
| not modelled | 100.0 | 35 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
61 | d1idsa1 |
| not modelled | 100.0 | 35 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
62 | d2p4ka1 |
| not modelled | 100.0 | 32 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
63 | d1ix9a1 |
| not modelled | 100.0 | 43 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
64 | d1ma1a1 |
| not modelled | 100.0 | 34 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
65 | d1y67a1 |
| not modelled | 100.0 | 46 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
66 | d1kkca1 |
| not modelled | 100.0 | 37 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
67 | d1wb8a1 |
| not modelled | 100.0 | 36 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
68 | d1unfx1 |
| not modelled | 100.0 | 54 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
69 | d1b06a1 |
| not modelled | 100.0 | 35 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
70 | d3sdpa1 |
| not modelled | 100.0 | 77 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
71 | d1coja1 |
| not modelled | 99.9 | 31 | Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
72 | d2gykb1 |
| not modelled | 61.6 | 27 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
73 | d2jb0b1 |
| not modelled | 47.9 | 32 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
74 | c7ceiB_ |
| not modelled | 45.4 | 32 | PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
75 | d1kfta_ |
| not modelled | 28.6 | 12 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain
76 | c1kftA_ |
| not modelled | 28.6 | 12 | PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
77 | d2a1jb1 |
| not modelled | 21.4 | 18 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
78 | c1wqsA_ |
| not modelled | 19.1 | 47 | PDB header:hydrolase Chain: A: PDB Molecule:3c-like protease; PDBTitle: crystal structure of norovirus 3c-like protease
79 | c2jesG_ |
| not modelled | 19.0 | 11 | PDB header:viral protein Chain: G: PDB Molecule:portal protein; PDBTitle: portal protein from bacteriophage spp1
80 | d1t1ua1 |
| not modelled | 17.6 | 26 | Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase
81 | d2bgwa1 |
| not modelled | 16.9 | 30 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
82 | d1x2ia1 |
| not modelled | 16.8 | 21 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
83 | d1xl7a1 |
| not modelled | 15.8 | 27 | Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase
84 | d3cjsb1 |
| not modelled | 14.4 | 18 | Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain
85 | c2rnnA_ |
| not modelled | 14.3 | 17 | PDB header:ligase Chain: A: PDB Molecule:e3 sumo-protein ligase siz1; PDBTitle: solution structure of the n-terminal sap domain of sumo e3 ligases2 from saccharomyces cerevisiae
86 | c1xl8B_ |
| not modelled | 13.4 | 27 | PDB header:transferase Chain: B: PDB Molecule:peroxisomal carnitine o-octanoyltransferase; PDBTitle: crystal structure of mouse carnitine octanoyltransferase in2 complex with octanoylcarnitine
87 | c1skoA_ |
| not modelled | 12.8 | 24 | PDB header:signaling protein Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1 PDBTitle: mp1-p14 complex
88 | d1nm8a1 |
| not modelled | 12.7 | 41 | Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase
89 | d1ndba1 |
| not modelled | 12.0 | 41 | Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase
90 | c2fy2A_ |
| not modelled | 11.7 | 32 | PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: structures of ligand bound human choline acetyltransferase2 provide insight into regulation of acetylcholine synthesis
91 | c3cjtP_ |
| not modelled | 11.7 | 18 | PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11
92 | c2h4tB_ |
| not modelled | 10.8 | 27 | PDB header:transferase Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii
93 | d2dlka1 |
| not modelled | 10.5 | 16 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
94 | c1t7qA_ |
| not modelled | 10.5 | 41 | PDB header:transferase Chain: A: PDB Molecule:carnitine acetyltransferase; PDBTitle: crystal structure of the f565a mutant of murine carnitine2 acetyltransferase in complex with carnitine and coa
95 | c2nrzB_ |
| not modelled | 9.9 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation
96 | d2hu7a1 |
| not modelled | 8.9 | 50 | Fold:7-bladed beta-propeller Superfamily:Peptidase/esterase 'gauge' domain Family:Acylamino-acid-releasing enzyme, N-terminal donain
97 | d1mmsa2 |
| not modelled | 8.4 | 18 | Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain
98 | c2fyoA_ |
| not modelled | 8.3 | 27 | PDB header:transferase Chain: A: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase 22 in space group p43212
99 | c1q6xA_ |
| not modelled | 8.2 | 27 | PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: crystal structure of rat choline acetyltransferase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0