Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	A	E	F	I	I	R	L	I	L	A	A	I	A	C	G	A	I	G	M	E	R	Q	M	R	G	K	G	A	G	L	R	T	H	V	L	I	G	M	G	S	A	L	F	M	I	V	S	K	Y	G	F	A	D	V	L	S	L	D
Secondary structure
SS confidence
Disorder		?	?																									?		?																								?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	V	G	L	D	P	S	R	I	A	A	Q	V	V	T	G	V	G	F	I	G	A	G	N	I	L	V	R	N	Q	N	I	V	G	L	T	T	A	A	D	I	W	V	T	A	A	I	G	M	V	I	G	S	G	M	Y	E	L	G	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?																						?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	G	S	V	M	T	L	L	V	L	E	V	F	H	Q	L	T	F	R	L	M	N	K	N	Y	H	L	Q	L	T	L	V	N	G	N	T	V	S	M	L	D	W	F	K	Q	Q	K	I	K	T	D	L	V	S	L	Q	E	N	E	D
Secondary structure
SS confidence
Disorder																								?																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Sequence		H	E	V	V	A	I	D	I	Q	L	H	A	T	T	S	I	E	D	L	L	R	L	L	K	G	M	A	G	V	K	G	V	S	I	S
Secondary structure
SS confidence
Disorder																													?	?	?				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ibw chain A Region: 144 - 213 Aligned: 70 Modelled: 70 Confidence: 97.1% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 1sc6 chain A domain 3 Region: 141 - 214 Aligned: 73 Modelled: 74 Confidence: 95.6% Identity: 18% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 1u8s chain A domain 2 Region: 141 - 215 Aligned: 75 Modelled: 75 Confidence: 95.5% Identity: 15% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1ygy chain A domain 3 Region: 143 - 214 Aligned: 71 Modelled: 72 Confidence: 94.3% Identity: 10% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 2f1f chain A domain 1 Region: 142 - 213 Aligned: 72 Modelled: 72 Confidence: 94.0% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2fgc chain A domain 2 Region: 140 - 213 Aligned: 74 Modelled: 74 Confidence: 93.3% Identity: 12% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2pc6 chain A domain 2 Region: 141 - 213 Aligned: 73 Modelled: 72 Confidence: 92.5% Identity: 12% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f1f chain A Region: 141 - 213 Aligned: 73 Modelled: 73 Confidence: 92.4% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli Phyre2 PDB 2fgc chain A Region: 140 - 213 Aligned: 74 Modelled: 74 Confidence: 91.2% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima Phyre2 PDB 1ygy chain A Region: 141 - 214 Aligned: 73 Modelled: 74 Confidence: 90.0% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis Phyre2 PDB 2pc6 chain C Region: 141 - 213 Aligned: 73 Modelled: 72 Confidence: 89.6% Identity: 12% PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea Phyre2 PDB 1rwu chain A Region: 144 - 212 Aligned: 69 Modelled: 69 Confidence: 88.5% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli Phyre2 PDB 1rwu chain A Region: 144 - 212 Aligned: 69 Modelled: 69 Confidence: 88.5% Identity: 16% Fold: Ferredoxin-like Superfamily: YbeD/HP0495-like Family: YbeD-like Phyre2 PDB 2joq chain A domain 1 Region: 144 - 212 Aligned: 69 Modelled: 69 Confidence: 80.6% Identity: 12% Fold: Ferredoxin-like Superfamily: YbeD/HP0495-like Family: HP0495-like Phyre2 PDB 1kon chain A Region: 147 - 212 Aligned: 63 Modelled: 66 Confidence: 74.9% Identity: 13% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 2e1c chain A Region: 144 - 215 Aligned: 69 Modelled: 72 Confidence: 74.3% Identity: 10% PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Phyre2 PDB 1y7p chain B Region: 143 - 213 Aligned: 70 Modelled: 71 Confidence: 73.7% Identity: 9% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator Phyre2 PDB 2cyy chain A domain 2 Region: 144 - 213 Aligned: 67 Modelled: 70 Confidence: 68.6% Identity: 12% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2phm chain A Region: 144 - 214 Aligned: 71 Modelled: 71 Confidence: 65.6% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated Phyre2 PDB 2jsx chain A Region: 147 - 214 Aligned: 64 Modelled: 68 Confidence: 63.5% Identity: 9% PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd Phyre2 1 c3ibwA_ 2 d1sc6a3 3 d1u8sa2 4 d1ygya3 5 d2f1fa1 6 d2fgca2 7 d2pc6a2 8 c2f1fA_ 9 c2fgcA_ 10 c1ygyA_ 11 c2pc6C_ 12 c1rwuA_ 13 d1rwua_ 14 d2joqa1 15 d1kona_ 16 c2e1cA_ 17 c1y7pB_ 18 d2cyya2 19 c2phmA_ 20 c2jsxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ibwA_ 97.1 16 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 2 d1sc6a3 95.6 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 3 d1u8sa2 95.5 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 4 d1ygya3 94.3 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 5 d2f1fa1 94.0 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 6 d2fgca2 93.3 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 7 d2pc6a2 92.5 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 8 c2f1fA_ 92.4 16 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 9 c2fgcA_ 91.2 12 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 10 c1ygyA_ 90.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 11 c2pc6C_ 89.6 12 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 12 c1rwuA_ 88.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 13 d1rwua_ 88.5 16 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 14 d2joqa1 80.6 12 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:HP0495-like 15 d1kona_ 74.9 13 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 16 c2e1cA_ 74.3 10 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 17 c1y7pB_ 73.7 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 18 d2cyya2 68.6 12 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 19 c2phmA_ 65.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 20 c2jsxA_ 63.5 9 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 21 d1lfpa_ not modelled 62.1 13 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 22 c2ew9A_ not modelled 56.3 8 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 23 d1zpva1 not modelled 55.9 5 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 24 d1mw7a_ not modelled 55.7 16 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 25 c3k5pA_ not modelled 54.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 26 c2djwF_ not modelled 54.1 9 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 27 c2e1aD_ not modelled 52.1 6 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 28 d1qupa2 not modelled 52.0 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 29 d1lk5a2 not modelled 50.5 14 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 30 d1i1ga2 not modelled 49.9 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 31 c1u8sB_ not modelled 49.7 17 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 32 c2zbcH_ not modelled 47.6 9 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 33 d1u8sa1 not modelled 46.6 5 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 34 c1i1gA_ not modelled 40.7 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 35 c2qmxB_ not modelled 39.2 9 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 36 d3bpda1 not modelled 38.8 16 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 37 d2f06a2 not modelled 38.5 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 38 c1ybaC_ not modelled 38.2 19 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 39 d1tdja2 not modelled 36.5 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 40 c2x3dC_ not modelled 36.3 35 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 41 d1phza1 not modelled 34.9 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 42 d2raqa1 not modelled 34.0 24 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 43 c2crlA_ not modelled 33.2 18 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 44 c3mtjA_ not modelled 32.0 8 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 45 c3mwbA_ not modelled 31.5 12 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 46 d1m0sa2 not modelled 30.5 13 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 47 d1o8ba2 not modelled 28.1 10 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 48 d2cg4a2 not modelled 27.8 21 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 49 d1p6ta1 not modelled 26.3 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 50 c2e7xA_ not modelled 26.3 7 PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand 51 c3hyjD_ not modelled 26.1 12 PDB header:transcription regulator Chain: D: PDB Molecule:protein duf199/whia; PDBTitle: crystal structure of the n-terminal laglidadg domain of duf199/whia 52 c2gqqB_ not modelled 26.1 11 PDB header:transcription Chain: B: PDB Molecule:leucine-responsive regulatory protein; PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp) 53 c3n0vD_ not modelled 25.4 5 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 54 c3dxsX_ not modelled 25.2 12 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 55 d2nzca1 not modelled 25.2 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 56 c2l3mA_ not modelled 25.0 14 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 57 d2qmwa2 not modelled 24.8 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 58 c2aj1A_ not modelled 24.5 20 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 59 c3luyA_ not modelled 24.3 14 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 60 c2ldiA_ not modelled 24.2 15 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 61 d2qifa1 not modelled 23.8 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 62 d1s6ua_ not modelled 23.5 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 63 c2p6tH_ not modelled 23.3 8 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 64 c2bj3D_ not modelled 22.5 14 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 65 c2yy3B_ not modelled 22.1 10 PDB header:translation Chain: B: PDB Molecule:elongation factor 1-beta; PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii 66 d1q8la_ not modelled 21.4 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 67 d1uj4a2 not modelled 21.2 15 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 68 d1cc8a_ not modelled 20.9 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 69 d1p6ta2 not modelled 20.5 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 70 c2cg4B_ not modelled 18.8 9 PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc 71 c2ia0A_ not modelled 17.3 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 72 c2rogA_ not modelled 17.0 19 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 73 d1sb6a_ not modelled 16.8 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 74 c1yjrA_ not modelled 16.5 11 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 75 d1osda_ not modelled 16.1 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 76 c3i4pA_ not modelled 16.0 4 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, asnc family; PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens 77 c2gcfA_ not modelled 15.8 9 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 78 d1u0sa_ not modelled 15.7 16 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 79 c2vbzA_ not modelled 15.3 15 PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan 80 d1afia_ not modelled 14.2 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 81 c1lk5C_ not modelled 14.0 13 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 82 d2ggpb1 not modelled 13.6 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 83 c1vi7A_ not modelled 13.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein 84 d2f1fa2 not modelled 13.1 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 85 c2ca9B_ not modelled 12.9 16 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 86 d2i5nl1 not modelled 12.7 21 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 87 c2ofhX_ not modelled 12.5 15 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 88 d2fmra_ not modelled 12.4 13 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 89 c2k2pA_ not modelled 12.0 5 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 90 c2kt2A_ not modelled 11.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 91 c2y3yC_ not modelled 11.2 16 PDB header:transcription Chain: C: PDB Molecule:putative nickel-responsive regulator; PDBTitle: holo-ni(ii) hpnikr is a symmetric tetramer containing four2 canonic square-planar ni(ii) ions at physiological ph 92 c1yg0A_ not modelled 11.2 16 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 93 d1q5ya_ not modelled 11.1 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:Nickel responsive regulator NikR, C-terminal domain 94 d2pc6a1 not modelled 11.0 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 95 c2cveA_ not modelled 10.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 96 c2w2mP_ not modelled 10.6 29 PDB header:hydrolase/receptor Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: wt pcsk9-deltac bound to wt egf-a of ldlr 97 c2pmwA_ not modelled 10.6 29 PDB header:hydrolase Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9) 98 c2p4eP_ not modelled 10.6 29 PDB header:hydrolase Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: crystal structure of pcsk9 99 d2cu6a1 not modelled 10.3 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0