Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Y	T	L	P	S	L	P	Y	A	Y	D	A	L	E	P	H	F	D	K	Q	T	M	E	I	H	H	T	K	H	H	Q	T	Y	V	N	N	A	N	A	A	L	E	S	L	P	E	F	A	N	L	P	V	E	E	L	I	T	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	D	Q	L	P	A	D	K	K	T	V	L	R	N	N	A	G	G	H	A	N	H	S	L	F	W	K	G	L	K	K	G	T	T	L	Q	G	D	L	K	A	A	I	E	R	D	F	G	S	V	D	N	F	K	A	E	F	E	K	A
Secondary structure
SS confidence
Disorder				?	?	?																									?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	S	R	F	G	S	G	W	A	W	L	V	L	K	G	D	K	L	A	V	V	S	T	A	N	Q	D	S	P	L	M	G	E	A	I	S	G	A	S	G	F	P	I	M	G	L	D	V	W	E	H	A	Y	Y	L	K	F	Q	N
Secondary structure
SS confidence
Disorder				?	?																																?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence		R	R	P	D	Y	I	K	E	F	W	N	V	V	N	W	D	E	A	A	A	R	F	A	A	K	K
Secondary structure
SS confidence
Disorder		?																							?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1en4 chain C Region: 2 - 206 Aligned: 205 Modelled: 205 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: C: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure analysis of the e. coli manganese2 superoxide dismutase q146h mutant Phyre2 PDB 1y67 chain D Region: 2 - 206 Aligned: 204 Modelled: 205 Confidence: 100.0% Identity: 70% PDB header:oxidoreductase Chain: D: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans Phyre2 PDB 1gv3 chain B Region: 1 - 205 Aligned: 199 Modelled: 199 Confidence: 100.0% Identity: 52% PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase Phyre2 PDB 1xre chain B Region: 2 - 205 Aligned: 198 Modelled: 204 Confidence: 100.0% Identity: 51% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution. Phyre2 PDB 1mng chain A Region: 1 - 205 Aligned: 199 Modelled: 199 Confidence: 100.0% Identity: 55% PDB header:oxidoreductase(superoxide acceptor) Chain: A: PDB Molecule:manganese superoxide dismutase; PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus Phyre2 PDB 2rcv chain A Region: 2 - 205 Aligned: 198 Modelled: 204 Confidence: 100.0% Identity: 61% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase Phyre2 PDB 2cw2 chain B Region: 2 - 206 Aligned: 192 Modelled: 205 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase 1; PDBTitle: crystal structure of superoxide dismutase from p. marinus Phyre2 PDB 1gn4 chain B Region: 2 - 206 Aligned: 192 Modelled: 198 Confidence: 100.0% Identity: 42% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase. Phyre2 PDB 3h1s chain B Region: 1 - 204 Aligned: 190 Modelled: 204 Confidence: 100.0% Identity: 46% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4 Phyre2 PDB 3js4 chain C Region: 3 - 206 Aligned: 196 Modelled: 203 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum Phyre2 PDB 3cei chain A Region: 3 - 206 Aligned: 190 Modelled: 204 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori Phyre2 PDB 1ma1 chain E Region: 2 - 205 Aligned: 191 Modelled: 204 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum Phyre2 PDB 1my6 chain A Region: 2 - 204 Aligned: 194 Modelled: 197 Confidence: 100.0% Identity: 46% PDB header:oxidoreductase Chain: A: PDB Molecule:iron (iii) superoxide dismutase; PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics Phyre2 PDB 2a03 chain A Region: 1 - 205 Aligned: 192 Modelled: 198 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei Phyre2 PDB 3bfr chain A Region: 2 - 205 Aligned: 197 Modelled: 204 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: the crystal structure of sod2 from saccharomyces cerevisiae Phyre2 PDB 1avm chain A Region: 3 - 206 Aligned: 191 Modelled: 197 Confidence: 100.0% Identity: 47% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide Phyre2 PDB 1p7g chain L Region: 1 - 206 Aligned: 193 Modelled: 206 Confidence: 100.0% Identity: 42% PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum Phyre2 PDB 1b06 chain A Region: 2 - 206 Aligned: 195 Modelled: 199 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: superoxide dismutase from sulfolobus acidocaldarius Phyre2 PDB 1dt0 chain A Region: 2 - 206 Aligned: 191 Modelled: 205 Confidence: 100.0% Identity: 45% PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis Phyre2 PDB 1n0n chain B Region: 2 - 206 Aligned: 193 Modelled: 198 Confidence: 100.0% Identity: 45% PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [mn]; PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase Phyre2 1 c1en4C_ 2 c1y67D_ 3 c1gv3B_ 4 c1xreB_ 5 c1mngA_ 6 c2rcvA_ 7 c2cw2B_ 8 c1gn4B_ 9 c3h1sB_ 10 c3js4C_ 11 c3ceiA_ 12 c1ma1E_ 13 c1my6A_ 14 c2a03A_ 15 c3bfrA_ 16 c1avmA_ 17 c1p7gL_ 18 c1b06A_ 19 c1dt0A_ 20 c1n0nB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1en4C_ 100.0 100 PDB header:oxidoreductase Chain: C: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure analysis of the e. coli manganese2 superoxide dismutase q146h mutant 2 c1y67D_ 100.0 70 PDB header:oxidoreductase Chain: D: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of manganese superoxide dismutase from2 deinococcus radiodurans 3 c1gv3B_ 100.0 52 PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase 4 c1xreB_ 100.0 51 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution. 5 c1mngA_ 100.0 55 PDB header:oxidoreductase(superoxide acceptor) Chain: A: PDB Molecule:manganese superoxide dismutase; PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus 6 c2rcvA_ 100.0 61 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: crystal structure of the bacillus subtilis superoxide2 dismutase 7 c2cw2B_ 100.0 39 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase 1; PDBTitle: crystal structure of superoxide dismutase from p. marinus 8 c1gn4B_ 100.0 42 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase. 9 c3h1sB_ 100.0 46 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4 10 c3js4C_ 100.0 37 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum 11 c3ceiA_ 100.0 37 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori 12 c1ma1E_ 100.0 43 PDB header:oxidoreductase Chain: E: PDB Molecule:superoxide dismutase; PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum 13 c1my6A_ 100.0 46 PDB header:oxidoreductase Chain: A: PDB Molecule:iron (iii) superoxide dismutase; PDBTitle: the 1.6 a structure of fe-superoxide dismutase from the2 thermophilic cyanobacterium thermosynechococcus elongatus3 : correlation of epr and structural characteristics 14 c2a03A_ 100.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:fe-superoxide dismutase homolog; PDBTitle: superoxide dismutase protein from plasmodium berghei 15 c3bfrA_ 100.0 43 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase [mn]; PDBTitle: the crystal structure of sod2 from saccharomyces cerevisiae 16 c1avmA_ 100.0 47 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide 17 c1p7gL_ 100.0 42 PDB header:oxidoreductase Chain: L: PDB Molecule:superoxide dismutase; PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum 18 c1b06A_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: superoxide dismutase from sulfolobus acidocaldarius 19 c1dt0A_ 100.0 45 PDB header:oxidoreductase Chain: A: PDB Molecule:superoxide dismutase; PDBTitle: cloning, sequence, and crystallographic structure of2 recombinant iron superoxide dismutase from pseudomonas3 ovalis 20 c1n0nB_ 100.0 45 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [mn]; PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase 21 c1unfX_ not modelled 100.0 45 PDB header:oxidoreductase Chain: X: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the eukaryotic fesod from vigna2 unguiculata suggests a new enzymatic mechanism 22 c3tqjB_ not modelled 100.0 47 PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase [fe]; PDBTitle: structure of the superoxide dismutase (fe) (sodb) from coxiella2 burnetii 23 c3dc5C_ not modelled 100.0 43 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [mn] 2; PDBTitle: crystal structure of a manganese superoxide dismutases from2 caenorhabditis elegans 24 c2nybC_ not modelled 100.0 46 PDB header:oxidoreductase Chain: C: PDB Molecule:superoxide dismutase [fe]; PDBTitle: crystal structure of e.coli iron superoxide dismutase q69e2 at 1.1 angstrom resolution 25 c1kkcB_ not modelled 100.0 48 PDB header:oxidoreductase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: crystal structure of aspergillus fumigatus mnsod 26 c3lj9A_ not modelled 100.0 44 PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of the iron superoxide dismutase from2 pseudoalteromonas haloplanktis in complex with sodium azide 27 c1qnnD_ not modelled 100.0 43 PDB header:oxidoreductase Chain: D: PDB Molecule:superoxide dismutase; PDBTitle: cambialistic superoxide dismutase from porphyromonas2 gingivalis 28 c2gpcB_ not modelled 100.0 38 PDB header:oxidoreductase Chain: B: PDB Molecule:iron superoxide dismutase; PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi 29 c2cw3A_ not modelled 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:iron superoxide dismutase; PDBTitle: x-ray structure of pmsod2, superoxide dismutase from2 perkinsus marinus 30 c1cojA_ not modelled 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (superoxide dismutase); PDBTitle: fe-sod from aquifex pyrophilus, a hyperthermophilic bacterium 31 d1ix9a2 not modelled 100.0 99 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 32 d1y67a2 not modelled 100.0 68 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 33 d2p4ka2 not modelled 100.0 44 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 34 d1idsa2 not modelled 100.0 42 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 35 d1bsma2 not modelled 100.0 43 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 36 d1unfx2 not modelled 100.0 51 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 37 d1gv3a2 not modelled 100.0 54 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 38 d1mnga2 not modelled 100.0 53 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 39 d1wb8a2 not modelled 100.0 39 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 40 d1b06a2 not modelled 100.0 39 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 41 d1jr9a2 not modelled 100.0 56 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 42 d1dt0a2 not modelled 100.0 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 43 d1p7ga2 not modelled 100.0 39 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 44 d2nyba2 not modelled 100.0 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 45 d1my6a2 not modelled 100.0 54 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 46 d1ma1a2 not modelled 100.0 43 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 47 d1uera2 not modelled 100.0 44 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 48 d1kkca2 not modelled 100.0 43 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 49 d1coja2 not modelled 100.0 32 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 50 d3sdpa2 not modelled 100.0 48 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 51 d1uerc2 not modelled 100.0 45 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 52 d1mnga1 not modelled 100.0 55 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 53 d1gv3a1 not modelled 100.0 49 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 54 d1ix9a1 not modelled 100.0 100 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 55 d1jr9a1 not modelled 100.0 57 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 56 d1p7ga1 not modelled 100.0 44 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 57 d1y67a1 not modelled 100.0 75 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 58 d1uera1 not modelled 100.0 42 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 59 d1bsma1 not modelled 100.0 49 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 60 d1dt0a1 not modelled 100.0 42 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 61 d1idsa1 not modelled 100.0 43 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 62 d1my6a1 not modelled 100.0 36 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 63 d2nyba1 not modelled 100.0 43 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 64 d2p4ka1 not modelled 100.0 43 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 65 d1ma1a1 not modelled 100.0 43 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 66 d1kkca1 not modelled 100.0 52 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 67 d1wb8a1 not modelled 100.0 35 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 68 d1unfx1 not modelled 100.0 35 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 69 d1b06a1 not modelled 100.0 33 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 70 d3sdpa1 not modelled 100.0 44 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 71 d1coja1 not modelled 99.9 21 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 72 d2gykb1 not modelled 61.9 20 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 73 c1kftA_ not modelled 40.7 9 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 74 d1kfta_ not modelled 40.7 9 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 75 c7ceiB_ not modelled 37.1 21 PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein 76 d2jb0b1 not modelled 35.9 23 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 77 d1t1ua1 not modelled 35.2 22 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 78 d1nm8a1 not modelled 31.7 36 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 79 c1t7qA_ not modelled 30.2 41 PDB header:transferase Chain: A: PDB Molecule:carnitine acetyltransferase; PDBTitle: crystal structure of the f565a mutant of murine carnitine2 acetyltransferase in complex with carnitine and coa 80 d1ndba1 not modelled 30.1 41 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 81 c1xl8B_ not modelled 28.7 32 PDB header:transferase Chain: B: PDB Molecule:peroxisomal carnitine o-octanoyltransferase; PDBTitle: crystal structure of mouse carnitine octanoyltransferase in2 complex with octanoylcarnitine 82 c2fy2A_ not modelled 27.5 23 PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: structures of ligand bound human choline acetyltransferase2 provide insight into regulation of acetylcholine synthesis 83 d2bgwa1 not modelled 24.9 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 84 d1x2ia1 not modelled 24.2 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 85 c1q6xA_ not modelled 22.4 23 PDB header:transferase Chain: A: PDB Molecule:choline o-acetyltransferase; PDBTitle: crystal structure of rat choline acetyltransferase 86 c2fyoA_ not modelled 22.1 36 PDB header:transferase Chain: A: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase 22 in space group p43212 87 d2a1jb1 not modelled 21.7 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 88 c3oruA_ not modelled 18.8 21 PDB header:metal binding protein Chain: A: PDB Molecule:duf1989 family protein; PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution 89 d1dgsa1 not modelled 15.0 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 90 c2nrzB_ not modelled 13.9 24 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 91 d1xl7a1 not modelled 13.4 17 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 92 c2h4tB_ not modelled 11.7 17 PDB header:transferase Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii 93 c3amkA_ not modelled 11.4 15 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 94 c1wqsA_ not modelled 9.9 32 PDB header:hydrolase Chain: A: PDB Molecule:3c-like protease; PDBTitle: crystal structure of norovirus 3c-like protease 95 c3di4A_ not modelled 9.7 17 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf1989; PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution 96 c2hjmB_ not modelled 8.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 97 c1k32E_ not modelled 8.4 12 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 98 c1n6dE_ not modelled 8.4 12 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 99 d1mhyd_ not modelled 8.4 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0