Email l.a.kelley@imperial.ac.uk Description Q47150 Date Thu Jan 5 12:36:25 GMT 2012 Unique Job ID 092353bcc562d3fa

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k29A_ 99.7 33 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 2 d2bj7a1 83.3 12 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 3 d1y9ba1 83.2 27 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VCA0319-like 4 d1p94a_ 82.6 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 5 c2kebA_ 80.2 9 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 6 c2bj3D_ 74.2 13 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 7 d2bsqe1 74.2 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Trafficking protein A-like 8 c1q5vB_ 73.5 22 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 9 d2hzab1 68.8 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 10 d2hzaa1 68.7 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 11 c2ca9B_ 59.3 18 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 12 c3bq3A_ 56.9 9 PDB header:cell cycle, ligase Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: crystal structure of s. cerevisiae dcn1 13 d1mnta_ 41.2 5 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 14 d1u5ta1 35.6 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 15 c2fe3B_ 31.6 13 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 16 c1u5tA_ 31.0 15 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 17 c3cuqA_ 29.7 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 18 c2zmeA_ 29.6 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 19 c2h1rA_ 28.1 24 PDB header:transferase Chain: A: PDB Molecule:dimethyladenosine transferase, putative; PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum 20 c3ltiA_ 25.5 19 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 21 c3g5oA_ not modelled 25.5 19 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 22 c3cqrB_ not modelled 23.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast; PDBTitle: crystal structure of the lipocalin domain of violaxanthin2 de-epoxidase (vde) at ph5 23 c1vbiA_ not modelled 22.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 24 c3ebwA_ not modelled 21.5 29 PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches 25 d1i4ua_ not modelled 21.2 0 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 26 c3h87D_ not modelled 20.2 22 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 27 c1u9pA_ not modelled 20.1 5 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 28 c1avoA_ not modelled 18.3 11 PDB header:proteasome activator Chain: A: PDB Molecule:11s regulator; PDBTitle: proteasome activator reg(alpha) 29 d2hsga1 not modelled 17.4 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 30 c1rr7A_ not modelled 17.2 11 PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu 31 d1rr7a_ not modelled 17.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor 32 c2g8yB_ not modelled 16.4 8 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 33 d1b28a_ not modelled 16.1 12 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 34 d1gkab_ not modelled 16.0 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 35 c2hzqA_ not modelled 15.9 5 PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone 36 d1qwda_ not modelled 15.8 24 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 37 c2k5jB_ not modelled 15.5 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 38 c3oopA_ not modelled 15.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 39 d1sxjd1 not modelled 15.0 5 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 40 c2fu4B_ not modelled 14.7 14 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 41 d2idba2 not modelled 14.4 10 Fold:UbiD C-terminal domain-like Superfamily:UbiD C-terminal domain-like Family:UbiD C-terminal domain-like 42 d2ff4a2 not modelled 14.0 16 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:BTAD-like 43 c2jucA_ not modelled 13.4 14 PDB header:unknown function Chain: A: PDB Molecule:pre-mrna-splicing factor urn1; PDBTitle: urn1 ff domain yeast 44 d1mzba_ not modelled 13.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 45 d1iwga5 not modelled 12.5 22 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 46 d2vqca1 not modelled 12.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 47 c2vqcA_ not modelled 12.3 20 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 48 d1v92a_ not modelled 10.9 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 49 c2kp6A_ not modelled 10.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 50 d1l6ja1 not modelled 10.4 17 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 51 c2l5pA_ not modelled 10.4 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 52 c2vzaD_ not modelled 10.3 12 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 53 c2xstA_ not modelled 10.2 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 54 c3by0B_ not modelled 10.1 19 PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin 55 c3l4rA_ not modelled 9.8 19 PDB header:allergen, lipid binding protein Chain: A: PDB Molecule:minor allergen can f 2; PDBTitle: crystal structure of the dog lipocalin allergen can f 2 and2 implications for cross-reactivity to the cat allergen fel d 4 56 c2qwwB_ not modelled 9.5 31 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 57 c2k23A_ not modelled 9.1 19 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 58 d1epba_ not modelled 9.0 5 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 59 c1a11A_ not modelled 8.8 15 PDB header:acetylcholine receptor Chain: A: PDB Molecule:acetylcholine receptor m2; PDBTitle: nmr structure of membrane spanning segment 2 of the2 acetylcholine receptor in dpc micelles, 10 structures 60 d2ohwa1 not modelled 8.7 13 Fold:Bacillus chorismate mutase-like Superfamily:YueI-like Family:YueI-like 61 c1eq8A_ not modelled 8.7 15 PDB header:signaling protein Chain: A: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 62 c1eq8E_ not modelled 8.7 15 PDB header:signaling protein Chain: E: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 63 c1eq8C_ not modelled 8.7 15 PDB header:signaling protein Chain: C: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 64 c1eq8B_ not modelled 8.7 15 PDB header:signaling protein Chain: B: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 65 c1eq8D_ not modelled 8.7 15 PDB header:signaling protein Chain: D: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 66 d1ew3a_ not modelled 8.1 10 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 67 d1gm6a_ not modelled 8.0 14 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 68 d1znda1 not modelled 7.7 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 69 c1z4hA_ not modelled 7.6 13 PDB header:protein binding, dna binding protein Chain: A: PDB Molecule:tor inhibition protein; PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase 70 d2pb9a1 not modelled 7.5 8 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 71 d12asa_ not modelled 7.5 12 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 72 d1uxca_ not modelled 7.4 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 73 c3nrwA_ not modelled 7.3 17 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 74 d1cuka1 not modelled 7.2 18 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 75 c2rn7A_ not modelled 7.2 18 PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 76 d1xkia_ not modelled 7.1 11 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 77 c2jyaA_ not modelled 7.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 78 c3czcA_ not modelled 6.9 14 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 79 c3ld1A_ not modelled 6.8 24 PDB header:hydrolase Chain: A: PDB Molecule:replicase polyprotein 1a; PDBTitle: crystal structure of ibv nsp2a 80 c2w57A_ not modelled 6.6 14 PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains 81 c2rdpA_ not modelled 6.6 22 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus 82 c3iukB_ not modelled 6.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 83 c3ecoB_ not modelled 6.5 17 PDB header:transcription Chain: B: PDB Molecule:mepr; PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa 84 d1efaa1 not modelled 6.3 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 85 c1vjqB_ not modelled 6.3 30 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 86 d1yupa1 not modelled 6.3 11 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 87 d1oqya2 not modelled 6.3 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 88 d1qpza1 not modelled 6.2 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 89 c3mr2A_ not modelled 6.2 15 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 90 d2ieaa3 not modelled 6.2 12 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 91 c1vzmB_ not modelled 6.1 25 PDB header:calcium-binding protein Chain: B: PDB Molecule:osteocalcin; PDBTitle: osteocalcin from fish argyrosomus regius 92 c3bx6A_ not modelled 6.0 10 PDB header:signaling protein Chain: A: PDB Molecule:alpha-1-acid glycoprotein; PDBTitle: crystal structure of human alpha 1 acid glycoprotein 93 d1bw6a_ not modelled 6.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 94 d1i94m_ not modelled 6.0 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 95 d1mkma1 not modelled 5.9 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 96 d1zj8a1 not modelled 5.8 17 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 97 d1q9ja2 not modelled 5.7 9 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:NRPS condensation domain (amide synthase) 98 d1dv0a_ not modelled 5.7 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 99 c2idbB_ not modelled 5.6 10 PDB header:lyase Chain: B: PDB Molecule:3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PDBTitle: crystal structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase2 (ubid) from escherichia coli, northeast structural genomics target3 er459.