Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6Y8
DateThu Jan 5 11:04:15 GMT 2012
Unique Job ID083c5b901308e030

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2khoA_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
Confidence and coverage
Confidence:100.0% Coverage: 94%
600 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT
Secondary structure 
SS confidence 
Disorder  ???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT
Secondary structure 
SS confidence 
Disorder 
???
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA
Secondary structure 
SS confidence 
Disorder  ?
???
????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGD
Secondary structure 
SS confidence 
Disorder 
????
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME
Secondary structure 
SS confidence 
Disorder 
??????
?
Disorder confidence 
 
   .........610.........620.........630........
Sequence  IAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDKK
Secondary structure 
SS confidence 
Disorder 
???????????????????????
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2kho chain A

3D model

Region: 4 - 603
Aligned: 600
Modelled: 600
Confidence: 100.0%
Identity: 100%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate

Phyre2

PDB 3d2f chain C

3D model

Region: 2 - 614
Aligned: 602
Modelled: 611
Confidence: 100.0%
Identity: 24%
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70

Phyre2

PDB 2v7y chain A

3D model

Region: 1 - 531
Aligned: 500
Modelled: 503
Confidence: 100.0%
Identity: 67%
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state

Phyre2

PDB 1dkg chain D

3D model

Region: 3 - 383
Aligned: 376
Modelled: 381
Confidence: 100.0%
Identity: 99%
PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak

Phyre2

PDB 3iuc chain C

3D model

Region: 1 - 384
Aligned: 374
Modelled: 384
Confidence: 100.0%
Identity: 54%
PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp

Phyre2

PDB 1hpm chain A

3D model

Region: 2 - 383
Aligned: 373
Modelled: 382
Confidence: 100.0%
Identity: 51%
PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site

Phyre2

PDB 2v7z chain A

3D model

Region: 2 - 384
Aligned: 374
Modelled: 379
Confidence: 100.0%
Identity: 50%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state

Phyre2

PDB 1jcg chain A

3D model

Region: 1 - 379
Aligned: 317
Modelled: 334
Confidence: 100.0%
Identity: 25%
PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp

Phyre2

PDB 3h1q chain B

3D model

Region: 5 - 379
Aligned: 242
Modelled: 273
Confidence: 100.0%
Identity: 29%
PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans

Phyre2

PDB 1dkg chain D domain 2

3D model

Region: 188 - 383
Aligned: 192
Modelled: 196
Confidence: 100.0%
Identity: 99%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1dkg chain D domain 1

3D model

Region: 3 - 183
Aligned: 181
Modelled: 181
Confidence: 100.0%
Identity: 100%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1e4g chain T

3D model

Region: 4 - 379
Aligned: 328
Modelled: 342
Confidence: 100.0%
Identity: 13%
PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima

Phyre2

PDB 2e8a chain A domain 1

3D model

Region: 2 - 183
Aligned: 181
Modelled: 182
Confidence: 100.0%
Identity: 56%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1bup chain A domain 2

3D model

Region: 185 - 383
Aligned: 191
Modelled: 199
Confidence: 100.0%
Identity: 47%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1u00 chain A

3D model

Region: 392 - 613
Aligned: 222
Modelled: 222
Confidence: 100.0%
Identity: 37%
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc

Phyre2

PDB 2e8a chain A domain 2

3D model

Region: 185 - 384
Aligned: 192
Modelled: 196
Confidence: 100.0%
Identity: 49%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1bup chain A domain 1

3D model

Region: 2 - 183
Aligned: 181
Modelled: 182
Confidence: 100.0%
Identity: 54%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1o1f chain 4

3D model

Region: 2 - 383
Aligned: 319
Modelled: 343
Confidence: 100.0%
Identity: 17%
PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle

Phyre2

PDB 2d0o chain A

3D model

Region: 4 - 381
Aligned: 328
Modelled: 343
Confidence: 100.0%
Identity: 18%
PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+

Phyre2

PDB 3dpq chain E

3D model

Region: 389 - 600
Aligned: 203
Modelled: 212
Confidence: 100.0%
Identity: 100%
PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)

Phyre2
1
c2khoA_
2
c3d2fC_
3
c2v7yA_
4
c1dkgD_
5
c3iucC_
6
c1hpmA_
7
c2v7zA_
8
c1jcgA_
9
c3h1qB_
10
d1dkgd2
11
d1dkgd1
12
c1e4gT_
13
d2e8aa1
14
d1bupa2
15
c1u00A_
16
d2e8aa2
17
d1bupa1
18
c1o1f4_
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c2d0oA_
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c3dpqE_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2khoA_
100.0 100 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
2c3d2fC_
100.0 24 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
3c2v7yA_
100.0 67 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
4c1dkgD_
100.0 99 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
5c3iucC_
100.0 54 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
6c1hpmA_
100.0 51 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
7c2v7zA_
100.0 50 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
8c1jcgA_
100.0 25 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
9c3h1qB_
100.0 29 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
10d1dkgd2
100.0 99 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
11d1dkgd1
100.0 100 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
12c1e4gT_
100.0 13 PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima
13d2e8aa1
100.0 56 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
14d1bupa2
100.0 47 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
15c1u00A_
100.0 37 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
16d2e8aa2
100.0 49 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
17d1bupa1
100.0 54 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
18c1o1f4_
100.0 17 PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle
19c2d0oA_
100.0 18 PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+
20c3dpqE_
100.0 100 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
21c3dwlB_
not modelled 99.9 16 PDB header:structural protein
Chain: B: PDB Molecule:actin-related protein 3;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
22c2p9lA_
not modelled 99.9 16 PDB header:structural protein
Chain: A: PDB Molecule:actin-like protein 3;
PDBTitle: crystal structure of bovine arp2/3 complex
23d1jcea2
not modelled 99.9 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
24c1mwmA_
not modelled 99.9 17 PDB header:structural protein
Chain: A: PDB Molecule:parm;
PDBTitle: parm from plasmid r1 adp form
25d1jcea1
not modelled 99.9 34 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
26c2fsnB_
not modelled 99.9 20 PDB header:structural protein
Chain: B: PDB Molecule:hypothetical protein ta0583;
PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp
27c3n8eA_
not modelled 99.9 63 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
28c1bprA_
not modelled 99.9 98 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
29c3qb0C_
not modelled 99.8 18 PDB header:structural protein
Chain: C: PDB Molecule:actin-related protein 4;
PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp
30c2ychA_
not modelled 99.8 19 PDB header:cell cycle
Chain: A: PDB Molecule:competence protein pilm;
PDBTitle: pilm-piln type iv pilus biogenesis complex
31c3js6A_
not modelled 99.8 21 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized parm protein;
PDBTitle: crystal structure of apo psk41 parm protein
32d1yuwa1
not modelled 99.8 58 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
33c2op6A_
not modelled 99.8 56 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
34d1e4ft2
not modelled 99.8 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
35d1u00a2
not modelled 99.7 50 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
36c3dqgC_
not modelled 99.7 64 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
37d1dkza2
not modelled 99.7 99 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
38d2zgya2
not modelled 99.6 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
39d1huxa_
not modelled 99.6 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
40d2fsja1
not modelled 99.4 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
41d1dkza1
not modelled 99.3 100 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
42d1u00a1
not modelled 99.3 23 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
43d1nm1a2
not modelled 99.2 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
44d2hf3a2
not modelled 99.1 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
45d1dkyb1
not modelled 99.1 100 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
46d2fxua2
not modelled 99.1 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
47d1ud0a_
not modelled 99.0 14 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
48c3lofF_
not modelled 99.0 17 PDB header:chaperone
Chain: F: PDB Molecule:heat shock 70 kda protein 1;
PDBTitle: c-terminal domain of human heat shock 70kda protein 1b.
49c2p32B_
not modelled 98.9 16 PDB header:chaperone
Chain: B: PDB Molecule:heat shock 70 kda protein a;
PDBTitle: crystal structure of the c-terminal 10 kda subdomain from c. elegans2 hsp70
50d1yaga2
not modelled 98.9 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
51d1k8ka2
not modelled 98.9 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
52c2e2pA_
not modelled 98.8 13 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
53c1ud0B_
not modelled 98.8 14 PDB header:chaperone
Chain: B: PDB Molecule:70 kda heat-shock-like protein;
PDBTitle: crystal structure of the c-terminal 10-kda subdomain of hsc70
54c2p9kB_
not modelled 98.7 21 PDB header:structural protein
Chain: B: PDB Molecule:actin-like protein 2;
PDBTitle: crystal structure of bovine arp2/3 complex co-crystallized2 with atp and crosslinked with glutaraldehyde
55d1k8kb1
not modelled 98.7 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
56c3gg4B_
not modelled 98.6 13 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
57d2hf3a1
not modelled 98.2 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
58d1c0fa1
not modelled 98.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
59c3hz6A_
not modelled 98.1 12 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
60c3ifrB_
not modelled 98.1 19 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
61d1yaga1
not modelled 98.0 10 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
62c2nlxA_
not modelled 98.0 18 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
63d2fxua1
not modelled 97.9 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
64d1k8ka1
not modelled 97.9 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
65d2p3ra2
not modelled 97.8 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
66c2zf5O_
not modelled 97.8 18 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
67d1r59o2
not modelled 97.8 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
68c3gbtA_
not modelled 97.8 13 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
69c1t6dB_
not modelled 97.8 21 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
70c2dpnB_
not modelled 97.8 17 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
71d1e4ft1
not modelled 97.7 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
72c3hi0B_
not modelled 97.7 21 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
73c3flcX_
not modelled 97.7 23 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
74c1glbG_
not modelled 97.7 14 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
75c1nbwA_
not modelled 97.7 26 PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
76c3g25B_
not modelled 97.7 18 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
77c1xupO_
not modelled 97.7 22 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
78c2aa4B_
not modelled 97.7 17 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
79c3i8bA_
not modelled 97.7 22 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
80c3jvpA_
not modelled 97.7 15 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
81c2d4wA_
not modelled 97.6 16 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
82c2cgkB_
not modelled 97.6 18 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
83c3htvA_
not modelled 97.6 20 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
84c3ezwD_
not modelled 97.5 19 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
85d2d0oa3
not modelled 97.5 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
86c2w40C_
not modelled 97.4 14 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
87d1nbwa3
not modelled 97.4 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
88c3cerD_
not modelled 97.2 15 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
89c2floA_
not modelled 97.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
90c3eo3B_
not modelled 97.0 20 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
91c1zc6A_
not modelled 96.8 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
92c2ap1A_
not modelled 96.7 17 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
93c1z6rC_
not modelled 96.7 14 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
94c2ivoC_
not modelled 96.7 18 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
95c3enoB_
not modelled 96.4 17 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
96c3r8eA_
not modelled 96.3 19 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
97c2qm1D_
not modelled 96.0 21 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
98c3h6eB_
not modelled 95.8 13 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
99c2ch5D_
not modelled 95.8 15 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
100d2ewsa1
not modelled 95.7 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
101c1woqB_
not modelled 94.9 21 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
102c3mdqA_
not modelled 94.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
103c1z05A_
not modelled 93.9 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
104d1zc6a1
not modelled 93.5 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
105d2p3ra1
not modelled 93.4 35 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
106c3cetA_
not modelled 92.8 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63
107d1sz2a1
not modelled 91.8 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
108d1vhxa_
not modelled 91.7 41 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
109d2ap1a1
not modelled 91.4 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
110c3tsuA_
not modelled 91.1 12 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
111d1nu0a_
not modelled 90.9 32 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
112d2fsja2
not modelled 90.7 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
113d1iv0a_
not modelled 90.4 18 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
114d2aa4a2
not modelled 90.0 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
115d2ch5a2
not modelled 89.8 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
116d2i7na2
not modelled 89.7 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
117c3aapA_
not modelled 89.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:ectonucleoside triphosphate diphosphohydrolase i;
PDBTitle: crystal structure of lp1ntpdase from legionella pneumophila
118c3cqyA_
not modelled 89.5 14 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
119d1u6za3
not modelled 88.7 24 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
120d1z05a2
not modelled 88.6 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0