Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	S	E	K	V	I	D	H	Y	E	N	P	R	N	V	G	S	F	D	N	N	D	E	N	V	G	S	G	M	V	G	A	P	A	C	G	D	V	M	K	L	Q	I	K	V	N	D	E	G	I	I	E	D	A	R	F	K	T
Secondary structure
SS confidence
Disorder		?	?	?	?													?												?	?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	G	C	G	S	A	I	A	S	S	S	L	V	T	E	W	V	K	G	K	S	L	D	E	A	Q	A	I	K	N	T	D	I	A	E	E	L	E	L	P	P	V	K	I	H	C	S	I	L	A	E	D	A	I	K	A	A	I	A	D
Secondary structure
SS confidence
Disorder																																							?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		Y	K	S	K	R	E	A	K
Secondary structure
SS confidence
Disorder						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1r9p chain A Region: 1 - 126 Aligned: 126 Modelled: 126 Confidence: 100.0% Identity: 86% Fold: SufE/NifU Superfamily: SufE/NifU Family: NifU/IscU domain Phyre2 PDB 2z7e chain B Region: 1 - 128 Aligned: 125 Modelled: 128 Confidence: 100.0% Identity: 53% PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster Phyre2 PDB 1wfz chain A Region: 9 - 128 Aligned: 120 Modelled: 120 Confidence: 100.0% Identity: 74% Fold: SufE/NifU Superfamily: SufE/NifU Family: NifU/IscU domain Phyre2 PDB 1xjs chain A Region: 2 - 124 Aligned: 118 Modelled: 123 Confidence: 100.0% Identity: 31% Fold: SufE/NifU Superfamily: SufE/NifU Family: NifU/IscU domain Phyre2 PDB 1su0 chain B Region: 2 - 120 Aligned: 114 Modelled: 119 Confidence: 100.0% Identity: 38% Fold: SufE/NifU Superfamily: SufE/NifU Family: NifU/IscU domain Phyre2 PDB 2qq4 chain A Region: 2 - 119 Aligned: 114 Modelled: 118 Confidence: 100.0% Identity: 32% PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 Phyre2 PDB 1mzg chain A Region: 19 - 126 Aligned: 106 Modelled: 108 Confidence: 96.2% Identity: 13% Fold: SufE/NifU Superfamily: SufE/NifU Family: SufE-like Phyre2 PDB 1ni7 chain A Region: 35 - 122 Aligned: 86 Modelled: 88 Confidence: 94.9% Identity: 21% Fold: SufE/NifU Superfamily: SufE/NifU Family: SufE-like Phyre2 PDB 1wlo chain A Region: 35 - 123 Aligned: 86 Modelled: 89 Confidence: 91.3% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 Phyre2 PDB 2e5a chain A Region: 16 - 95 Aligned: 76 Modelled: 80 Confidence: 75.5% Identity: 11% PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp Phyre2 PDB 1u0l chain A domain 1 Region: 34 - 56 Aligned: 23 Modelled: 23 Confidence: 67.4% Identity: 22% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2zkr chain R Region: 70 - 124 Aligned: 55 Modelled: 55 Confidence: 56.0% Identity: 15% PDB header:ribosomal protein/rna Chain: R: PDB Molecule:rna expansion segment es39 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1t9h chain A domain 1 Region: 34 - 56 Aligned: 23 Modelled: 23 Confidence: 54.1% Identity: 26% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1v97 chain A domain 4 Region: 41 - 120 Aligned: 80 Modelled: 80 Confidence: 52.3% Identity: 8% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1ffv chain C domain 1 Region: 41 - 119 Aligned: 78 Modelled: 79 Confidence: 50.5% Identity: 13% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 1fs1 chain B domain 1 Region: 64 - 88 Aligned: 25 Modelled: 25 Confidence: 49.6% Identity: 24% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 1fs2 chain B domain 1 Region: 64 - 88 Aligned: 25 Modelled: 25 Confidence: 42.2% Identity: 24% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 3jyw chain N Region: 70 - 124 Aligned: 55 Modelled: 55 Confidence: 38.3% Identity: 18% PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Phyre2 PDB 1nex chain A domain 1 Region: 64 - 88 Aligned: 25 Modelled: 25 Confidence: 37.8% Identity: 24% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 2kel chain B Region: 112 - 127 Aligned: 16 Modelled: 16 Confidence: 35.7% Identity: 44% PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 Phyre2 1 d1r9pa_ 2 c2z7eB_ 3 d1wfza_ 4 d1xjsa_ 5 d1su0b_ 6 c2qq4A_ 7 d1mzga_ 8 d1ni7a_ 9 c1wloA_ 10 c2e5aA_ 11 d1u0la1 12 c2zkrr_ 13 d1t9ha1 14 d1v97a4 15 d1ffvc1 16 d1fs1b1 17 d1fs2b1 18 c3jywN_ 19 d1nexa1 20 c2kelB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1r9pa_ 100.0 86 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 2 c2z7eB_ 100.0 53 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 3 d1wfza_ 100.0 74 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 4 d1xjsa_ 100.0 31 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 5 d1su0b_ 100.0 38 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 6 c2qq4A_ 100.0 32 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 7 d1mzga_ 96.2 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 8 d1ni7a_ 94.9 21 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 9 c1wloA_ 91.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 10 c2e5aA_ 75.5 11 PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp 11 d1u0la1 67.4 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 12 c2zkrr_ 56.0 15 PDB header:ribosomal protein/rna Chain: R: PDB Molecule:rna expansion segment es39 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 13 d1t9ha1 54.1 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 d1v97a4 52.3 8 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 15 d1ffvc1 50.5 13 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 16 d1fs1b1 49.6 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 17 d1fs2b1 42.2 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 18 c3jywN_ 38.3 18 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 19 d1nexa1 37.8 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 20 c2kelB_ 35.7 44 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 21 d1i4ja_ not modelled 34.8 23 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 22 d1n62c1 not modelled 33.6 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 23 c3cxoA_ not modelled 33.3 13 PDB header:lyase Chain: A: PDB Molecule:putative galactonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate 24 c4a17Q_ not modelled 33.2 16 PDB header:ribosome Chain: Q: PDB Molecule:rpl17; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 25 c3iz5V_ not modelled 33.0 18 PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l17 (l22p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 26 c2ftcM_ not modelled 31.8 16 PDB header:ribosome Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 27 d2ovra1 not modelled 31.7 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 28 c1x2gB_ not modelled 28.7 18 PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli 29 d1vqza1 not modelled 28.0 17 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 30 d1t3qc1 not modelled 27.9 17 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 31 d1x2ga1 not modelled 27.6 26 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 32 d2zjrp1 not modelled 25.9 23 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 33 d2p92a1 not modelled 24.0 25 Fold:eIF1-like Superfamily:TM1457-like Family:TM1457-like 34 c3bboU_ not modelled 23.6 23 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l22; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 35 d1jroa3 not modelled 21.5 13 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 36 c2p1nD_ not modelled 18.2 20 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 37 d2axoa1 not modelled 18.1 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 38 c3hrdC_ not modelled 18.1 16 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 39 d1vqor1 not modelled 15.8 24 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 40 d1io2a_ not modelled 14.9 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 41 c1nexC_ not modelled 14.7 24 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 42 c2yv5A_ not modelled 14.3 17 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 43 c1t9hA_ not modelled 14.0 24 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 44 c2axoA_ not modelled 13.8 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein atu2684; PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35. 45 c3h5fB_ not modelled 13.0 27 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 46 c3h5fA_ not modelled 13.0 27 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 47 c3h5gA_ not modelled 13.0 27 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 48 c3h5gC_ not modelled 13.0 27 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 49 c3h5fC_ not modelled 13.0 27 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 50 c3h5gB_ not modelled 13.0 27 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 51 c2l55A_ not modelled 12.7 15 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 52 d1rvka2 not modelled 12.5 9 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 53 c1zeqX_ not modelled 12.2 15 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 54 c1vqzA_ not modelled 12.0 17 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 55 c2ovqA_ not modelled 11.1 24 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 56 c2p0iA_ not modelled 10.8 10 PDB header:lyase Chain: A: PDB Molecule:l-rhamnonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae 57 c2jnvA_ not modelled 10.0 17 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 58 c1u0lB_ not modelled 10.0 22 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 59 d1iloa_ not modelled 9.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 60 d2if6a1 not modelled 8.8 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 61 c3nyeA_ not modelled 8.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine 62 c3iz5w_ not modelled 8.0 35 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 63 c2fgxA_ not modelled 7.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 64 d1r8ja1 not modelled 7.6 29 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 65 c2k8sA_ not modelled 7.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6 66 d1ofcx1 not modelled 7.4 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 67 d1lj8a3 not modelled 7.3 23 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Mannitol 2-dehydrogenase 68 c2oz3F_ not modelled 7.2 13 PDB header:lyase Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii 69 c3ic4A_ not modelled 7.2 5 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin (grx-1); PDBTitle: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus2 fulgidus 70 c3f4yF_ not modelled 7.0 41 PDB header:viral protein Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain; PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence 71 d1egoa_ not modelled 7.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 72 d1yeya2 not modelled 6.9 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 73 d1v2za_ not modelled 6.8 14 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 74 d1rm6b1 not modelled 6.8 14 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 75 d1sv1a_ not modelled 6.7 14 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 76 d1r5qa_ not modelled 6.5 7 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 77 c2x6pA_ not modelled 6.4 29 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 78 c2x6pC_ not modelled 6.4 29 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 79 c2x6pB_ not modelled 6.4 29 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 80 d2cona1 not modelled 6.4 30 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 81 d1nm3a1 not modelled 6.2 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 82 c1cosB_ not modelled 6.1 29 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 83 c1cosA_ not modelled 6.1 29 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 84 c1cosC_ not modelled 6.1 29 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 85 c1ffuF_ not modelled 6.1 14 PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 86 d2jnya1 not modelled 6.0 10 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 87 d1yq9h1 not modelled 6.0 28 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 88 c2wpnB_ not modelled 5.9 28 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 89 c3pdgA_ not modelled 5.8 12 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 90 d1ryph_ not modelled 5.6 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 91 d2gl5a2 not modelled 5.5 13 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 92 c2kpiA_ not modelled 5.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 93 d1u07a_ not modelled 5.4 17 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 94 d1iyxa2 not modelled 5.2 20 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 95 c3b9jJ_ not modelled 5.2 7 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 96 c3etrM_ not modelled 5.2 7 PDB header:oxidoreductase Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine 97 d1rypi_ not modelled 5.2 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 98 c3hrdF_ not modelled 5.2 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 99 d1e3db_ not modelled 5.1 31 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0