Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0C079
DateThu Jan 5 11:29:49 GMT 2012
Unique Job ID064dcf99beb1a18e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2k29A_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
Confidence and coverage
Confidence: 99.7% Coverage: 63%
50 residues ( 63% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
79 residues (100%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVE
Secondary structure 


















SS confidence 



























































Disorder  ???













































?

??





Disorder confidence 



























































 
   .........70.........
Sequence  IVKERLRNPKPVRVTLDEL
Secondary structure 



SS confidence 


















Disorder 





?????????????
Disorder confidence 


















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2k29 chain A

3D model

Region: 1 - 50
Aligned: 50
Modelled: 50
Confidence: 99.7%
Identity: 100%
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb

Phyre2

PDB 2kc8 chain B

3D model

Region: 49 - 79
Aligned: 31
Modelled: 31
Confidence: 94.4%
Identity: 100%
PDB header:toxin/toxin repressor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: structure of e. coli toxin rele (r81a/r83a) mutant in2 complex with antitoxin relbc (k47-l79) peptide

Phyre2

PDB 2bj7 chain A domain 1

3D model

Region: 1 - 44
Aligned: 44
Modelled: 44
Confidence: 90.6%
Identity: 18%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: CopG-like

Phyre2

PDB 1q5v chain B

3D model

Region: 1 - 43
Aligned: 43
Modelled: 43
Confidence: 87.0%
Identity: 26%
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr

Phyre2

PDB 2bj3 chain D

3D model

Region: 1 - 41
Aligned: 41
Modelled: 41
Confidence: 84.1%
Identity: 20%
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo

Phyre2

PDB 1p94 chain A

3D model

Region: 4 - 43
Aligned: 40
Modelled: 40
Confidence: 80.7%
Identity: 18%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: CopG-like

Phyre2

PDB 2keb chain A

3D model

Region: 6 - 45
Aligned: 40
Modelled: 40
Confidence: 79.6%
Identity: 8%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit

Phyre2

PDB 2ca9 chain B

3D model

Region: 1 - 41
Aligned: 41
Modelled: 41
Confidence: 77.4%
Identity: 17%
PDB header:transcriptional regulation
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation

Phyre2

PDB 2hza chain A domain 1

3D model

Region: 4 - 41
Aligned: 38
Modelled: 38
Confidence: 75.6%
Identity: 24%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: CopG-like

Phyre2

PDB 2hza chain B domain 1

3D model

Region: 4 - 42
Aligned: 39
Modelled: 39
Confidence: 74.2%
Identity: 26%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: CopG-like

Phyre2

PDB 2k5j chain B

3D model

Region: 1 - 45
Aligned: 45
Modelled: 45
Confidence: 58.9%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1

Phyre2

PDB 1sxj chain D domain 1

3D model

Region: 10 - 45
Aligned: 35
Modelled: 36
Confidence: 50.7%
Identity: 20%
Fold: post-AAA+ oligomerization domain-like
Superfamily: post-AAA+ oligomerization domain-like
Family: DNA polymerase III clamp loader subunits, C-terminal domain

Phyre2

PDB 1mnt chain A

3D model

Region: 1 - 66
Aligned: 62
Modelled: 66
Confidence: 42.0%
Identity: 16%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: Arc/Mnt-like phage repressors

Phyre2

PDB 1y9b chain A domain 1

3D model

Region: 2 - 41
Aligned: 40
Modelled: 40
Confidence: 39.5%
Identity: 15%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: VCA0319-like

Phyre2

PDB 2hsg chain A domain 1

3D model

Region: 7 - 34
Aligned: 28
Modelled: 28
Confidence: 36.0%
Identity: 14%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: GalR/LacI-like bacterial regulator

Phyre2

PDB 1myl chain A

3D model

Region: 1 - 43
Aligned: 43
Modelled: 43
Confidence: 35.9%
Identity: 19%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: Arc/Mnt-like phage repressors

Phyre2

PDB 1u9p chain A

3D model

Region: 3 - 43
Aligned: 41
Modelled: 41
Confidence: 35.2%
Identity: 17%
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc

Phyre2

PDB 1b28 chain A

3D model

Region: 1 - 35
Aligned: 35
Modelled: 35
Confidence: 30.1%
Identity: 20%
Fold: Ribbon-helix-helix
Superfamily: Ribbon-helix-helix
Family: Arc/Mnt-like phage repressors

Phyre2

PDB 1u5t chain A domain 1

3D model

Region: 9 - 27
Aligned: 19
Modelled: 19
Confidence: 29.2%
Identity: 16%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Vacuolar sorting protein domain

Phyre2

PDB 1u5t chain A

3D model

Region: 9 - 39
Aligned: 31
Modelled: 31
Confidence: 28.0%
Identity: 10%
PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex

Phyre2
1

c2k29A_
2

c2kc8B_
3

d2bj7a1
4

c1q5vB_
5

c2bj3D_
6

d1p94a_
7

c2kebA_
8

c2ca9B_
9

d2hzaa1
10

d2hzab1
11

c2k5jB_
12

d1sxjd1
13

d1mnta_
14

d1y9ba1
15

d2hsga1
16

d1myla_
17

c1u9pA_
18

d1b28a_
19

d1u5ta1
20

c1u5tA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k29A_



99.7 100 PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
2c2kc8B_



94.4 100 PDB header:toxin/toxin repressor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: structure of e. coli toxin rele (r81a/r83a) mutant in2 complex with antitoxin relbc (k47-l79) peptide
3d2bj7a1



90.6 18 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4c1q5vB_



87.0 26 PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
5c2bj3D_



84.1 20 PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
6d1p94a_



80.7 18 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
7c2kebA_



79.6 8 PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
8c2ca9B_



77.4 17 PDB header:transcriptional regulation
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
9d2hzaa1



75.6 24 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
10d2hzab1



74.2 26 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
11c2k5jB_



58.9 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
12d1sxjd1



50.7 20 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
13d1mnta_



42.0 16 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
14d1y9ba1



39.5 15 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
15d2hsga1



36.0 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
16d1myla_



35.9 19 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
17c1u9pA_



35.2 17 PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
18d1b28a_



30.1 20 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
19d1u5ta1



29.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
20c1u5tA_



28.0 10 PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
21c2kwpA_



not modelled 27.0 18 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: solution structure of the aminoterminal domain of e. coli nusa
22c3cuqA_



not modelled 26.7 21 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
23c2zmeA_



not modelled 26.4 21 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
24c1vbiA_



not modelled 26.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase;
PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
25c3ltiA_



not modelled 25.8 25 PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
26d1mylb_



not modelled 24.5 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
27c3cqrB_



not modelled 23.9 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast;
PDBTitle: crystal structure of the lipocalin domain of violaxanthin2 de-epoxidase (vde) at ph5
28d2cpga_



not modelled 23.5 13 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
29d1i4ua_



not modelled 23.3 19 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
30d1qpza1



not modelled 22.8 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
31d2bsqe1



not modelled 22.6 18 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
32c2h1rA_



not modelled 22.5 19 PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase, putative;
PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum
33c3ebwA_



not modelled 22.3 24 PDB header:allergen
Chain: A: PDB Molecule:per a 4 allergen;
PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches
34d2ff4a2



not modelled 20.4 26 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:BTAD-like
35c3oopA_



not modelled 20.3 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
36d1efaa1



not modelled 20.3 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
37c2jucA_



not modelled 20.2 9 PDB header:unknown function
Chain: A: PDB Molecule:pre-mrna-splicing factor urn1;
PDBTitle: urn1 ff domain yeast
38d1cuka1



not modelled 20.1 31 Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
39d2bjca1



not modelled 19.1 11 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
40d1uxca_



not modelled 18.1 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
41c3nrwA_



not modelled 18.1 18 PDB header:recombination
Chain: A: PDB Molecule:phage integrase/site-specific recombinase;
PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a
42d1lcda_



not modelled 17.1 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
43d2vqca1



not modelled 16.8 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:F112-like
44c2vqcA_



not modelled 16.8 11 PDB header:dna-binding protein
Chain: A: PDB Molecule:hypothetical 13.2 kda protein;
PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1.
45d1sxjb1



not modelled 16.6 8 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
46d1gkab_



not modelled 16.5 24 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
47d1qwda_



not modelled 16.4 33 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
48c2hzqA_



not modelled 16.1 10 PDB header:transport protein
Chain: A: PDB Molecule:apolipoprotein d;
PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone
49c3h87D_



not modelled 16.0 28 PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
50d1l6ja1



not modelled 16.0 27 Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
51c3ecoB_



not modelled 15.4 24 PDB header:transcription
Chain: B: PDB Molecule:mepr;
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
52c2lcvA_



not modelled 14.2 19 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
53c2q37A_



not modelled 13.9 24 PDB header:plant protein, lyase
Chain: A: PDB Molecule:ohcu decarboxylase;
PDBTitle: crystal structure of ohcu decarboxylase in the presence of2 (s)-allantoin
54d2q37a1



not modelled 13.9 24 Fold:UraD-like
Superfamily:UraD-Like
Family:UraD-like
55c3by0B_



not modelled 13.6 19 PDB header:ligand binding protein
Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin;
PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin
56c2l8nA_



not modelled 13.2 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
57c2k23A_



not modelled 12.8 29 PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 2;
PDBTitle: solution structure analysis of the rlcn2
58c2xstA_



not modelled 12.6 5 PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 15;
PDBTitle: crystal structure of the human lipocalin 15
59c2qwwB_



not modelled 12.5 10 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
60d1a0pa1



not modelled 12.3 14 Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
61d2d0ob1



not modelled 11.9 14 Fold:Anticodon-binding domain-like
Superfamily:B12-dependent dehydatase associated subunit
Family:Dehydratase-reactivating factor beta subunit
62c3l4rA_



not modelled 11.5 10 PDB header:allergen, lipid binding protein
Chain: A: PDB Molecule:minor allergen can f 2;
PDBTitle: crystal structure of the dog lipocalin allergen can f 2 and2 implications for cross-reactivity to the cat allergen fel d 4
63d2pb9a1



not modelled 11.4 21 Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:Phosphomethylpyrimidine kinase C-terminal domain-like
64d1epba_



not modelled 11.3 10 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
65c2l5pA_



not modelled 10.9 18 PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 12;
PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis
66d1jhfa1



not modelled 10.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
67d1v92a_



not modelled 10.8 30 Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
68c1avoA_



not modelled 10.5 17 PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
69c2rdpA_



not modelled 10.5 24 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
70c2rn7A_



not modelled 10.4 23 PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
71d1gm6a_



not modelled 10.4 14 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
72d2ieaa3



not modelled 10.3 15 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
73d1ew3a_



not modelled 9.9 19 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
74c3jw4C_



not modelled 9.9 18 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family;
PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum
75d1mkma1



not modelled 9.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
76d1iqpa1



not modelled 9.7 14 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
77c3k0lA_



not modelled 9.7 16 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
78d1uxda_



not modelled 9.6 19 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
79c2pexA_



not modelled 9.5 10 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
80d1g7oa1



not modelled 9.4 9 Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
81d1bazb_



not modelled 9.2 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
82c2jxnA_



not modelled 9.2 6 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein ymr074c;
PDBTitle: solution structure of s. cerevisiae pdcd5-like protein ymr074cp
83d1znda1



not modelled 9.2 19 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
84d1x71a1



not modelled 9.1 19 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
85d1iwga5



not modelled 8.9 17 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
86c2g8yB_



not modelled 8.8 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:malate/l-lactate dehydrogenases;
PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli.
87d2o8ia1



not modelled 8.8 14 Fold:UraD-like
Superfamily:UraD-Like
Family:UraD-like
88d2o70a1



not modelled 8.7 17 Fold:UraD-like
Superfamily:UraD-Like
Family:UraD-like
89d2doda1



not modelled 8.7 18 Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
90d1uzca_



not modelled 8.3 18 Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
91d1xkia_



not modelled 8.1 16 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
92d2jn6a1



not modelled 8.1 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
93c2kobA_



not modelled 8.0 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a
94d1avsa_



not modelled 7.9 14 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
95d1baza_



not modelled 7.8 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
96d1xl3c1



not modelled 7.7 6 Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:TyeA-like
97c1bdhA_



not modelled 7.7 19 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
98d1yupa1



not modelled 7.5 26 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
99d2isya1



not modelled 7.5 6 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0