Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	W	Q	S	I	D	E	L	Q	D	I	A	S	D	L	P	R	F	I	H	A	L	D	E	L	S	R	R	L	G	L	N	I	T	P	L	T	A	D	H	I	S	L	R	C	H	Q	N	A	T	A	E	R	W	R	R	G	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Q	C	G	E	L	L	S	E	N	M	I	N	G	R	P	I	C	L	F	K	L	H	E	P	V	Q	V	A	H	W	Q	F	S	I	V	E	L	P	W	P	G	E	K	R	Y	P	H	E	G	W	E	H	I	E	I	V	L	P	G
Secondary structure
SS confidence
Disorder									?	?	?	?																																?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	P	E	T	L	N	A	R	A	L	A	L	L	S	D	E	G	L	S	L	P	G	I	S	V	K	T	S	S	P	K	G	E	H	E	R	L	P	N	P	T	L	A	V	T	D	G	K	T	T	I	K	F	H	P	W	S	I	E	E
Secondary structure
SS confidence
Disorder								?	?			?	?	?	?	?	?	?		?	?	?	?			?	?				?	?	?	?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		I	V	A	S	E	Q	S	A
Secondary structure
SS confidence
Disorder							?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k4n chain A Region: 1 - 186 Aligned: 179 Modelled: 185 Confidence: 100.0% Identity: 99% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Hypothetical protein YecM (EC4020) Phyre2 PDB 1sp8 chain A domain 2 Region: 40 - 119 Aligned: 74 Modelled: 80 Confidence: 76.1% Identity: 20% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1t47 chain A domain 2 Region: 40 - 114 Aligned: 75 Modelled: 75 Confidence: 75.8% Identity: 16% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1sqi chain A domain 1 Region: 38 - 131 Aligned: 90 Modelled: 94 Confidence: 72.7% Identity: 16% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1zsw chain A Region: 40 - 119 Aligned: 76 Modelled: 80 Confidence: 69.7% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family Phyre2 PDB 2qh0 chain A Region: 38 - 127 Aligned: 89 Modelled: 90 Confidence: 64.4% Identity: 10% PDB header:lyase Chain: A: PDB Molecule:lactoylglutathione lyase; PDBTitle: crystal structure of a glyoxalase from clostridium acetobutylicum Phyre2 PDB 1sqd chain A domain 2 Region: 39 - 114 Aligned: 67 Modelled: 76 Confidence: 60.0% Identity: 16% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1sqd chain A domain 1 Region: 40 - 61 Aligned: 22 Modelled: 22 Confidence: 55.6% Identity: 18% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 3ct8 chain A Region: 40 - 63 Aligned: 24 Modelled: 24 Confidence: 53.3% Identity: 4% PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase; PDBTitle: crystal structure of a putative glyoxalase (np_243026.1) from bacillus2 halodurans at 2.10 a resolution Phyre2 PDB 3gm5 chain A Region: 40 - 63 Aligned: 24 Modelled: 24 Confidence: 52.7% Identity: 8% PDB header:isomerase Chain: A: PDB Molecule:lactoylglutathione lyase and related lyases; PDBTitle: crystal structure of a putative methylmalonyl-coenzyme a2 epimerase from thermoanaerobacter tengcongensis at 2.0 a3 resolution Phyre2 PDB 2r5v chain A Region: 40 - 116 Aligned: 75 Modelled: 77 Confidence: 50.1% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:pcza361.1; PDBTitle: hydroxymandelate synthase crystal structure Phyre2 PDB 1kll chain A Region: 40 - 120 Aligned: 77 Modelled: 81 Confidence: 49.2% Identity: 13% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Antibiotic resistance proteins Phyre2 PDB 1sp8 chain A domain 1 Region: 40 - 61 Aligned: 22 Modelled: 22 Confidence: 48.1% Identity: 23% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 3r4q chain B Region: 40 - 61 Aligned: 22 Modelled: 22 Confidence: 44.9% Identity: 18% PDB header:lyase Chain: B: PDB Molecule:lactoylglutathione lyase; PDBTitle: crystal structure of lactoylglutathione lyase from agrobacterium2 tumefaciens Phyre2 PDB 1zsw chain A domain 1 Region: 40 - 119 Aligned: 80 Modelled: 80 Confidence: 42.8% Identity: 11% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: BC1024-like Phyre2 PDB 3huh chain A Region: 40 - 61 Aligned: 22 Modelled: 22 Confidence: 41.2% Identity: 23% PDB header:viral protein Chain: A: PDB Molecule:virulence protein stm3117; PDBTitle: the structure of biphenyl-2,3-diol 1,2-dioxygenase iii-2 related protein from salmonella typhimurium Phyre2 PDB 1lgt chain A domain 2 Region: 40 - 64 Aligned: 25 Modelled: 25 Confidence: 37.4% Identity: 12% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1cjx chain A domain 2 Region: 40 - 61 Aligned: 22 Modelled: 22 Confidence: 36.2% Identity: 9% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 3oaj chain A Region: 40 - 121 Aligned: 81 Modelled: 82 Confidence: 35.6% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo; PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168 Phyre2 PDB 2gcu chain D Region: 18 - 105 Aligned: 80 Modelled: 88 Confidence: 35.4% Identity: 14% PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 Phyre2 1 d1k4na_ 2 d1sp8a2 3 d1t47a2 4 d1sqia1 5 c1zswA_ 6 c2qh0A_ 7 d1sqda2 8 d1sqda1 9 c3ct8A_ 10 c3gm5A_ 11 c2r5vA_ 12 d1klla_ 13 d1sp8a1 14 c3r4qB_ 15 d1zswa1 16 c3huhA_ 17 d1lgta2 18 d1cjxa2 19 c3oajA_ 20 c2gcuD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1k4na_ 100.0 99 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein YecM (EC4020) 2 d1sp8a2 76.1 20 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 3 d1t47a2 75.8 16 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 4 d1sqia1 72.7 16 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 5 c1zswA_ 69.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family 6 c2qh0A_ 64.4 10 PDB header:lyase Chain: A: PDB Molecule:lactoylglutathione lyase; PDBTitle: crystal structure of a glyoxalase from clostridium acetobutylicum 7 d1sqda2 60.0 16 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 8 d1sqda1 55.6 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 9 c3ct8A_ 53.3 4 PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase; PDBTitle: crystal structure of a putative glyoxalase (np_243026.1) from bacillus2 halodurans at 2.10 a resolution 10 c3gm5A_ 52.7 8 PDB header:isomerase Chain: A: PDB Molecule:lactoylglutathione lyase and related lyases; PDBTitle: crystal structure of a putative methylmalonyl-coenzyme a2 epimerase from thermoanaerobacter tengcongensis at 2.0 a3 resolution 11 c2r5vA_ 50.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:pcza361.1; PDBTitle: hydroxymandelate synthase crystal structure 12 d1klla_ 49.2 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 13 d1sp8a1 48.1 23 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 14 c3r4qB_ 44.9 18 PDB header:lyase Chain: B: PDB Molecule:lactoylglutathione lyase; PDBTitle: crystal structure of lactoylglutathione lyase from agrobacterium2 tumefaciens 15 d1zswa1 42.8 11 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:BC1024-like 16 c3huhA_ 41.2 23 PDB header:viral protein Chain: A: PDB Molecule:virulence protein stm3117; PDBTitle: the structure of biphenyl-2,3-diol 1,2-dioxygenase iii-2 related protein from salmonella typhimurium 17 d1lgta2 37.4 12 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 18 d1cjxa2 36.2 9 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 19 c3oajA_ 35.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo; PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168 20 c2gcuD_ 35.4 14 PDB header:hydrolase Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3; PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580 21 c1cjxC_ not modelled 34.5 15 PDB header:oxidoreductase Chain: C: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: crystal structure of pseudomonas fluorescens hppd 22 d1kw3b2 not modelled 34.1 10 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 23 c2p7pB_ not modelled 33.6 13 PDB header:metal binding protein, hydrolase Chain: B: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of genomically encoded fosfomycin resistance2 protein, fosx, from listeria monocytogenes complexed with mn(ii) and3 sulfate ion 24 d1xqaa_ not modelled 33.5 14 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 25 d1qbaa1 not modelled 32.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 26 c2rk0B_ not modelled 32.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase domain; PDBTitle: crystal structure of glyoxylase/bleomycin resistance2 protein/dioxygenase domain from frankia sp. ean1pec 27 c2pkaB_ not modelled 31.4 18 PDB header:serine proteinase Chain: B: PDB Molecule:kallikrein a; PDBTitle: refined 2 angstroms x-ray crystal structure of porcine2 pancreatic kallikrein a, a specific trypsin-like serine3 proteinase. crystallization, structure determination,4 crystallographic refinement, structure and its comparison5 with bovine trypsin 28 c3ghjA_ not modelled 31.0 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative integron gene cassette protein; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass4 29 c1sp8A_ not modelled 30.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: 4-hydroxyphenylpyruvate dioxygenase 30 c2qqzB_ not modelled 30.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase family protein, putative; PDBTitle: crystal structure of putative glyoxalase family protein from bacillus2 anthracis 31 c3zw5A_ not modelled 28.8 14 PDB header:lyase Chain: A: PDB Molecule:glyoxalase domain-containing protein 5; PDBTitle: crystal structure of the human glyoxalase domain-containing2 protein 5 32 d1e8oa_ not modelled 28.0 15 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 33 c3e5dA_ not modelled 28.0 10 PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase i; PDBTitle: crystal structure of a putative glyoxalase i (lmof2365_0426) from2 listeria monocytogenes str. 4b f2365 at 2.70 a resolution 34 c3l7tB_ not modelled 27.9 9 PDB header:metal binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1112c 35 c3pkwA_ not modelled 27.8 5 PDB header:lyase Chain: A: PDB Molecule:toxoflavin lyase (tfla); PDBTitle: crystal structure of toxoflavin lyase (tfla) bound to mn(ii) 36 d2c21a1 not modelled 27.5 9 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase) 37 d1qipa_ not modelled 26.7 9 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase) 38 c2rbbB_ not modelled 26.3 5 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase family enzyme from burkholderia phytofirmans psjn 39 d1t47a1 not modelled 26.2 10 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 40 d1zvpa2 not modelled 25.5 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 41 d1914a1 not modelled 24.3 15 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 42 d1h3ga2 not modelled 22.7 24 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 43 d1nkia_ not modelled 22.4 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 44 d1lgta1 not modelled 22.1 5 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 45 d1f1xa2 not modelled 21.7 10 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 46 c3p3dA_ not modelled 21.5 26 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii 47 d1f9za_ not modelled 20.5 10 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase) 48 d1sqia2 not modelled 19.6 23 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 49 c2wl9A_ not modelled 19.6 7 PDB header:oxidoreductase Chain: A: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: crystal structure of catechol 2,3-dioxygenase 50 c1kw3B_ not modelled 18.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:2,3-dihydroxybiphenyl dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxybiphenyal dioxygenase (bphc) at 1.452 a resolution 51 c3rriB_ not modelled 18.7 9 PDB header:metal binding protein Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of glyoxalase/bleomycin resistance2 protein/dioxygenase from alicyclobacillus acidocaldarius 52 c3kolA_ not modelled 18.6 17 PDB header:metal binding protein Chain: A: PDB Molecule:glyoxalase/bleomycin resistance PDBTitle: crystal structure of a glyoxalase/dioxygenase from nostoc2 punctiforme 53 d1ryua_ not modelled 18.4 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 54 d1npba_ not modelled 17.8 7 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 55 c3g12A_ not modelled 17.7 13 PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus 56 c2w00B_ not modelled 17.1 29 PDB header:hydrolase Chain: B: PDB Molecule:hsdr; PDBTitle: crystal structure of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp 57 c3rmuD_ not modelled 17.0 9 PDB header:isomerase Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial; PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee 58 d1jc4a_ not modelled 17.0 19 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Methylmalonyl-CoA epimerase 59 c3lm4C_ not modelled 16.4 10 PDB header:oxidoreductase Chain: C: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxy biphenyl dioxygenase from2 rhodococcus sp. (strain rha1) 60 d1sp9a_ not modelled 15.8 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 61 c3oa4A_ not modelled 15.6 20 PDB header:lyase Chain: A: PDB Molecule:glyoxalase; PDBTitle: crystal structure of hypothetical protein bh1468 from bacillus2 halodurans c-125 62 d1c20a_ not modelled 15.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 63 c1914A_ not modelled 15.4 15 PDB header:alu domain Chain: A: PDB Molecule:signal recognition particle 9/14 fusion protein; PDBTitle: signal recognition particle alu rna binding heterodimer, srp9/14 64 c2fupA_ not modelled 14.8 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:hypothetical protein pa3352; PDBTitle: crystal structure of a putative flagella synthesis protein flgn2 (pa3352) from pseudomonas aeruginosa at 1.48 a resolution 65 d2fupa1 not modelled 14.8 18 Fold:STAT-like Superfamily:FlgN-like Family:FlgN-like 66 c2zi8A_ not modelled 14.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:probable biphenyl-2,3-diol 1,2-dioxygenase bphc; PDBTitle: crystal structure of the hsac extradiol dioxygenase from m.2 tuberculosis in complex with 3,4-dihydroxy-9,10-3 seconandrost-1,3,5(10)-triene-9,17-dione (dhsa) 67 c3bqxA_ not modelled 14.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase-related enzyme; PDBTitle: high resolution crystal structure of a glyoxalase-related enzyme from2 fulvimarina pelagi 68 c1zvpB_ not modelled 14.4 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein vc0802; PDBTitle: crystal structure of a protein of unknown function vc0802 from vibrio2 cholerae, possible transport protein 69 c2jxjA_ not modelled 13.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:histone demethylase jarid1a; PDBTitle: nmr structure of the arid domain from the histone h3k42 demethylase rbp2 70 d2dyna_ not modelled 13.2 23 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 71 c3ktcB_ not modelled 13.1 21 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 72 c3omsA_ not modelled 12.8 14 PDB header:transferase Chain: A: PDB Molecule:phnb protein; PDBTitle: putative 3-demethylubiquinone-9 3-methyltransferase, phnb protein,2 from bacillus cereus. 73 d1mpya2 not modelled 12.5 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 74 c2ei2A_ not modelled 12.5 10 PDB header:oxidoreductase Chain: A: PDB Molecule:1,2-dihydroxynaphthalene dioxygenase; PDBTitle: crystal structure analysis of the 1,2-dihydroxynaphthalene dioxygenase2 from pseudomonas sp. stain c18 75 c3l9dA_ not modelled 12.2 8 PDB header:transferase Chain: A: PDB Molecule:putative gtp pyrophosphokinase; PDBTitle: the crystal structure of smu.1046c from streptococcus mutans ua159 76 c2p25A_ not modelled 12.2 5 PDB header:oxidoreductase Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: the crystal structure of the glyoxalase family protein from2 enterococcus faecalis 77 c1jmtB_ not modelled 12.2 63 PDB header:rna binding protein Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer 78 c1tfzA_ not modelled 12.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: structural basis for herbicidal inhibitor selectivity revealed by2 comparison of crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases 79 d1mpya1 not modelled 12.0 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 80 d1h7sa1 not modelled 11.9 67 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 81 d1nxia_ not modelled 11.8 10 Fold:Ferredoxin-like Superfamily:Hypothetical protein VC0424 Family:Hypothetical protein VC0424 82 c1knfA_ not modelled 11.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:2,3-dihydroxybiphenyl 1,2-dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase complexed2 with 3-methyl catechol under anaerobic condition 83 d1f1ua2 not modelled 11.7 10 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 84 d1lnsa2 not modelled 11.4 22 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:PepX C-terminal domain-like 85 d1xo8a_ not modelled 11.2 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 86 d1ig6a_ not modelled 10.9 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 87 d1e5xa_ not modelled 10.7 24 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 88 d1hl6a_ not modelled 10.2 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 89 c2hntE_ not modelled 10.2 32 PDB header:serine protease Chain: E: PDB Molecule:gamma-thrombin; PDBTitle: crystallographic structure of human gamma-thrombin 90 c1mpyD_ not modelled 10.1 10 PDB header:oxidoreductase Chain: D: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: structure of catechol 2,3-dioxygenase (metapyrocatechase)2 from pseudomonas putida mt-2 91 d2ibxa1 not modelled 10.0 28 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 92 c3h1tA_ not modelled 10.0 14 PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 93 d2dbsa1 not modelled 9.8 56 Fold:TTHC002-like Superfamily:TTHC002-like Family:TTHC002-like 94 c2w74B_ not modelled 9.6 29 PDB header:hydrolase Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein; PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp 95 d2i7ra1 not modelled 9.5 0 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 96 c3pyiA_ not modelled 9.3 13 PDB header:structural protein Chain: A: PDB Molecule:spindle assembly abnormal protein 6; PDBTitle: structure of the n-terminal domain of c. elegans sas-6 97 d1b63a1 not modelled 9.3 50 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 98 c3ey7B_ not modelled 9.2 14 PDB header:oxidoreductase Chain: B: PDB Molecule:biphenyl-2,3-diol 1,2-dioxygenase iii-related PDBTitle: structure from the mobile metagenome of v. cholerae.2 integron cassette protein vch_cass1 99 d1vjea_ not modelled 9.2 30 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0