Retrieve Phyre Job Id
Emailfeidakic@natur.cuni.cz
DescriptionUndefined
DateMon Apr 28 15:12:51 BST 2025
Unique Job ID1e07e1b7cd09b536
SequenceRPEWIWLALG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.247 Y:38.177 Z:61.924
Model (left) based on template c4y9hA_
Top template information
PDB header: lipid binding protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: the 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles
PDB Entry: PDBe RCSB PDBj
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Confidence and coverage
Confidence:100.0% Coverage:100%
218 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4y9hA_
100.0 100
PDB header: lipid binding protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: the 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles
PDB Entry: PDBe RCSB PDBj
2c5vn7B_
100.0 100
PDB header: membrane protein
Chain: B: PDB Molecule: Bacteriorhodopsin
PDBTitle: structure of bacteriorhodopsin from crystals grown at 20 deg celcius using glyncoc15+4 as an lcp host lipid
PDB Entry: PDBe RCSB PDBj
3c7z09A_
100.0 100
PDB header: membrane protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: crystal structure of the ground state of bacteriorhodopsin at 1.05 angstrom resolution
PDB Entry: PDBe RCSB PDBj
4c6guxA_
100.0 60
PDB header: proton transport
Chain: A: PDB Molecule: Archaerhodopsin-3
PDBTitle: dark-adapted structure of archaerhodopsin-3 at 100k
PDB Entry: PDBe RCSB PDBj
5c1uazA_
100.0 59
PDB header: proton transport
Chain: A: PDB Molecule: archaerhodopsin-1
PDBTitle: crystal structure of archaerhodopsin-1
PDB Entry: PDBe RCSB PDBj
6c2ei4A_
100.0 56
PDB header: transport protein
Chain: A: PDB Molecule: Archaerhodopsin-2
PDBTitle: trimeric complex of archaerhodopsin-2
PDB Entry: PDBe RCSB PDBj
7c4pxkA_
100.0 57
PDB header: proton transport
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: crystal structure of haloarcula marismortui bacteriorhodopsin i d94n mutant
PDB Entry: PDBe RCSB PDBj
8c4fbzA_
100.0 56
PDB header: membrane protein
Chain: A: PDB Molecule: deltarhodopsin
PDBTitle: crystal structure of deltarhodopsin from haloterrigena thermotolerans
PDB Entry: PDBe RCSB PDBj
9c4l35A_
100.0 57
PDB header: proton transport
Chain: A: PDB Molecule: Cruxrhodopsin-3
PDBTitle: crystal structure of cruxrhodopsin-3 at ph5 from haloarcula vallismortis at 2.1 angstrom resolution
PDB Entry: PDBe RCSB PDBj
10c4wavA_
100.0 56
PDB header: transport protein
Chain: A: PDB Molecule: Bacteriorhodopsin-I
PDBTitle: crystal structure of haloquadratum walsbyi bacteriorhodopsin mutant d93n
PDB Entry: PDBe RCSB PDBj
11c5itcA_
100.0 56
PDB header: membrane protein
Chain: A: PDB Molecule: Bacteriorhodopsin-I
PDBTitle: ;2.2-angstrom in meso crystal structure of haloquadratum walsbyi bacteriorhodopsin (hwbr) from styrene maleic acid (sma) polymer nanodiscs;
PDB Entry: PDBe RCSB PDBj
12c8wewA_
100.0 46
PDB header: membrane protein
Chain: A: PDB Molecule: Bacteriorhodopsin-II-like protein
PDBTitle: haloquadratum walsbyi middle rhodopsin
PDB Entry: PDBe RCSB PDBj
13c8xhwD_
100.0 48
PDB header: membrane protein
Chain: D: PDB Molecule: Bacteriorhodopsin-II-like protein
PDBTitle: haloquadratum walsbyi middle rhodopsin mutant - d84n
PDB Entry: PDBe RCSB PDBj
14c6kfqA_
100.0 46
PDB header: transport protein
Chain: A: PDB Molecule: Rhodopsin
PDBTitle: crystal structure of thermophilic rhodopsin from rubrobacter xylanophilus
PDB Entry: PDBe RCSB PDBj
15c6lm1A_
100.0 37
PDB header: membrane protein
Chain: A: PDB Molecule: Rhodopsin
PDBTitle: the crystal structure of cyanorhodopsin (cyr) n4075r from cyanobacteria tolypothrix sp. nies-4075
PDB Entry: PDBe RCSB PDBj
16c6lm0C_
100.0 37
PDB header: membrane protein
Chain: C: PDB Molecule: Rhodopsin
PDBTitle: the crystal structure of cyanorhodopsin (cyr) n2098r from cyanobacteria calothrix sp. nies-2098
PDB Entry: PDBe RCSB PDBj
17c1e12A_
100.0 35
PDB header: transport protein
Chain: A: PDB Molecule: HALORHODOPSIN
PDBTitle: halorhodopsin, a light-driven chloride pump
PDB Entry: PDBe RCSB PDBj
18c5ahyA_
100.0 35
PDB header: membrane protein
Chain: A: PDB Molecule: HALORHODOPSIN
PDBTitle: halorhodopsin from halobacterium salinarum in a new rhombohedral crystal form
PDB Entry: PDBe RCSB PDBj
19c6gyhA_
100.0 34
PDB header: proton transport
Chain: A: PDB Molecule: Family A G protein-coupled receptor-like protein
PDBTitle: crystal structure of the light-driven proton pump coccomyxa subellipsoidea rhodopsin csr
PDB Entry: PDBe RCSB PDBj
20c3qbgA_
100.0 33
PDB header: membrane protein
Chain: A: PDB Molecule: Halorhodopsin
PDBTitle: anion-free blue form of pharaonis halorhodopsin
PDB Entry: PDBe RCSB PDBj
21c8anqD_
not modelled 100.0 33
PDB header: membrane protein
Chain: D: PDB Molecule: Bacteriorhodopsin
PDBTitle: crystal structure of the microbial rhodopsin from sphingomonas paucimobilis (spar)
PDB Entry: PDBe RCSB PDBj
22c8xx8F_
not modelled 100.0 32
PDB header: membrane protein
Chain: F: PDB Molecule: Rhodopsin
PDBTitle: structure of glycilhalorhodopsin from salinarimonas soli
PDB Entry: PDBe RCSB PDBj
23c7bmhA_
not modelled 100.0 31
PDB header: membrane protein
Chain: A: PDB Molecule: Opsin
PDBTitle: crystal structure of a light-driven proton pump lr (mac) from leptosphaeria maculans
PDB Entry: PDBe RCSB PDBj
24c3am6A_
not modelled 100.0 31
PDB header: transport protein
Chain: A: PDB Molecule: rhodopsin-2
PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga acetabularia acetabulum
PDB Entry: PDBe RCSB PDBj
25c3am6D_
not modelled 100.0 31
PDB header: transport protein
Chain: D: PDB Molecule: rhodopsin-2
PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga acetabularia acetabulum
PDB Entry: PDBe RCSB PDBj
26c4hyjA_
not modelled 100.0 30
PDB header: proton transport
Chain: A: PDB Molecule: Rhodopsin
PDBTitle: crystal structure of exiguobacterium sibiricum rhodopsin
PDB Entry: PDBe RCSB PDBj
27c5jjnA_
not modelled 100.0 30
PDB header: signaling protein
Chain: A: PDB Molecule: Sensory rhodopsin-2
PDBTitle: ;structure of the srii/htrii(g83f) complex in p212121 space group ("v" shape);
PDB Entry: PDBe RCSB PDBj
28c5uk6A_
not modelled 100.0 29
PDB header: signaling protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: structure of anabaena sensory rhodopsin determined by solid state nmr spectroscopy and deer
PDB Entry: PDBe RCSB PDBj
29c5uk6C_
not modelled 100.0 29
PDB header: signaling protein
Chain: C: PDB Molecule: Bacteriorhodopsin
PDBTitle: structure of anabaena sensory rhodopsin determined by solid state nmr spectroscopy and deer
PDB Entry: PDBe RCSB PDBj
30c1xioA_
not modelled 100.0 30
PDB header: signaling protein
Chain: A: PDB Molecule: ANABAENA SENSORY RHODOPSIN
PDBTitle: anabaena sensory rhodopsin
PDB Entry: PDBe RCSB PDBj
31c5azdA_
not modelled 100.0 28
PDB header: transport protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: crystal structure of thermophilic rhodopsin.
PDB Entry: PDBe RCSB PDBj
32c8i2zA_
not modelled 100.0 27
PDB header: proton transport
Chain: A: PDB Molecule: Xanthorhodopsin
PDBTitle: cryo-em structure of the zeaxanthin-bound kin4b8
PDB Entry: PDBe RCSB PDBj
33c5awzA_
not modelled 100.0 27
PDB header: proton transport
Chain: A: PDB Molecule: Rhodopsin I
PDBTitle: crystal structure of the cell-free synthesized membrane protein, acetabularia rhodopsin i, at 1.57 angstrom
PDB Entry: PDBe RCSB PDBj
34c4jq6B_
not modelled 100.0 28
PDB header: proton transport
Chain: B: PDB Molecule: Proteorhodopsin
PDBTitle: crystal structure of blue light-absorbing proteorhodopsin from med12 at 2.3 angstrom
PDB Entry: PDBe RCSB PDBj
35c2l6xA_
not modelled 100.0 26
PDB header: proton transport
Chain: A: PDB Molecule: Green-light absorbing proteorhodopsin
PDBTitle: solution nmr structure of proteorhodopsin.
PDB Entry: PDBe RCSB PDBj
36c8cl7A_
not modelled 100.0 25
PDB header: membrane protein
Chain: A: PDB Molecule: Sodium pumping rhodopsin
PDBTitle: krokinobacter eikastus rhodopsin 2 (kr2) in dark state
PDB Entry: PDBe RCSB PDBj
37c7b03D_
not modelled 100.0 27
PDB header: proton transport
Chain: D: PDB Molecule: Proteorhodopsin
PDBTitle: cryo-em structure of the green-light absorbing proteorhodopsin
PDB Entry: PDBe RCSB PDBj
38c4klyB_
not modelled 100.0 27
PDB header: proton transport
Chain: B: PDB Molecule: Blue-light absorbing proteorhodopsin
PDBTitle: crystal structure of a blue-light absorbing proteorhodopsin mutant d97n from hot75
PDB Entry: PDBe RCSB PDBj
39c8cnkA_
not modelled 100.0 26
PDB header: proton transport
Chain: A: PDB Molecule: Green-light absorbing proteorhodopsin
PDBTitle: cryo-em structure of retinal-free proteoopsin bound to decanoate
PDB Entry: PDBe RCSB PDBj
40c8cnkD_
not modelled 100.0 26
PDB header: proton transport
Chain: D: PDB Molecule: Green-light absorbing proteorhodopsin
PDBTitle: cryo-em structure of retinal-free proteoopsin bound to decanoate
PDB Entry: PDBe RCSB PDBj
41c6tk7A_
not modelled 100.0 24
PDB header: membrane protein
Chain: A: PDB Molecule: Sodium pumping rhodopsin
PDBTitle: femtosecond to millisecond structural changes in a light-driven sodium pump: dark structure in acidic conditions
PDB Entry: PDBe RCSB PDBj
42c7o8fA_
not modelled 100.0 24
PDB header: membrane protein
Chain: A: PDB Molecule: Chloride pumping rhodopsin
PDBTitle: nmhr dark state structure determined by serial femtosecond crystallography
PDB Entry: PDBe RCSB PDBj
43c6nwdA_
not modelled 100.0 24
PDB header: transport protein
Chain: A: PDB Molecule: Gll0198 protein
PDBTitle: x-ray crystallographic structure of gloeobacter rhodopsin
PDB Entry: PDBe RCSB PDBj
44c8qleA_
not modelled 100.0 23
PDB header: membrane protein
Chain: A: PDB Molecule: Bacteriorhodopsin-like protein
PDBTitle: crystal structure of the light-driven sodium pump ernar in the monomeric form at ph 4.6
PDB Entry: PDBe RCSB PDBj
45c3ddlA_
not modelled 100.0 22
PDB header: transport protein
Chain: A: PDB Molecule: Xanthorhodopsin
PDBTitle: crystallographic structure of xanthorhodopsin, a light-driven ion pump with dual chromophore
PDB Entry: PDBe RCSB PDBj
46c8jh0B_
not modelled 100.0 22
PDB header: metal transport
Chain: B: PDB Molecule: Xanthorhodopsin
PDBTitle: crystal structure of the light-driven sodium pump ianar
PDB Entry: PDBe RCSB PDBj
47c6edqB_
not modelled 100.0 23
PDB header: membrane protein
Chain: B: PDB Molecule: Anion channelrhodopsin 1
PDBTitle: crystal structure of the light-gated anion channelrhodopsin gtacr1
PDB Entry: PDBe RCSB PDBj
48c6eyuA_
not modelled 100.0 23
PDB header: membrane protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
PDB Entry: PDBe RCSB PDBj
49c7e4gA_
not modelled 100.0 23
PDB header: membrane protein
Chain: A: PDB Molecule: schizorhodopsin 4
PDBTitle: crystal structure of schizorhodopsin 4
PDB Entry: PDBe RCSB PDBj
50c7avpA_
not modelled 100.0 22
PDB header: membrane protein
Chain: A: PDB Molecule: Bacteriorhodopsin
PDBTitle: crystal structure of marine actinobacteria clade rhodopsin (mar) in the o state
PDB Entry: PDBe RCSB PDBj
51c8yelA_
not modelled 100.0 20
PDB header: membrane protein
Chain: A: PDB Molecule: Cation channel rhodopsin 4
PDBTitle: cryo-em structure of the channelrhodopsin gtccr4
PDB Entry: PDBe RCSB PDBj
52c7e6zA_
not modelled 100.0 20
PDB header: membrane protein
Chain: A: PDB Molecule: Archaeal-type opsin 1, Archaeal-type opsin 2
PDBTitle: time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 50 microsecond structure
PDB Entry: PDBe RCSB PDBj
53c7c86A_
not modelled 100.0 20
PDB header: membrane protein
Chain: A: PDB Molecule: Sensory opsin A, Channelrhodopsin (ChR) chimera between ChR1 & ChR2
PDBTitle: time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: dark state structure
PDB Entry: PDBe RCSB PDBj
54c9go1A_
not modelled 100.0 19
PDB header: membrane protein
Chain: A: PDB Molecule: Archaeal-type opsin 1, Archaeal-type opsin 2
PDBTitle: c1c2 channelrhodopsin - smx dark structure
PDB Entry: PDBe RCSB PDBj
55c8yekA_
not modelled 100.0 18
PDB header: membrane protein
Chain: A: PDB Molecule: GtCCR2
PDBTitle: cryo-em structure of the channelrhodopsin gtccr2
PDB Entry: PDBe RCSB PDBj
56c6sqgE_
not modelled 100.0 19
PDB header: membrane protein
Chain: E: PDB Molecule: viral rhodopsin OLPVRII
PDBTitle: crystal structure of viral rhodopsin olpvrii
PDB Entry: PDBe RCSB PDBj
57c6sqgD_
not modelled 100.0 19
PDB header: membrane protein
Chain: D: PDB Molecule: viral rhodopsin OLPVRII
PDBTitle: crystal structure of viral rhodopsin olpvrii
PDB Entry: PDBe RCSB PDBj
58c6jo0A_
not modelled 100.0 18
PDB header: membrane protein
Chain: A: PDB Molecule: VirRDTS
PDBTitle: crystal structure of the dts-motif rhodopsin from phaeocystis globosa virus 12t
PDB Entry: PDBe RCSB PDBj
59c6eidB_
not modelled 100.0 14
PDB header: membrane protein
Chain: B: PDB Molecule: Archaeal-type opsin 2
PDBTitle: crystal structure of wild-type channelrhodopsin 2
PDB Entry: PDBe RCSB PDBj
60c7akxA_
not modelled 100.0 16
PDB header: membrane protein
Chain: A: PDB Molecule: viral rhodopsin OLPVR1
PDBTitle: crystal structure of the viral rhodopsin olpvr1 in p1 space group
PDB Entry: PDBe RCSB PDBj
61c7u55A_
not modelled 96.1 15
PDB header: membrane protein
Chain: A: PDB Molecule: Heliorhodopsin
PDBTitle: crystal structure of thermoplasmatales archaeon heliorhodopsin at ph 4.5
PDB Entry: PDBe RCSB PDBj
62c9ljjA_
not modelled 98.7 12
PDB header: membrane protein
Chain: A: PDB Molecule: Heliorhodopsin
PDBTitle: cryo-em structure of a nanobody bound heliorhodopsin
PDB Entry: PDBe RCSB PDBj
63c6su3A_
not modelled 98.7 12
PDB header: membrane protein
Chain: A: PDB Molecule: 48C12 heliorhodopsin
PDBTitle: crystal structure of the 48c12 heliorhodopsin in the violet form at ph 8.8
PDB Entry: PDBe RCSB PDBj
64c5abbC_
not modelled 98.5 30
PDB header: translation
Chain: C: PDB Molecule: GREEN-LIGHT ABSORBING PROTEORHODOPSIN
PDBTitle: visualization of a polytopic membrane protein during secy-mediated membrane insertion
PDB Entry: PDBe RCSB PDBj
65c8wjhA_
not modelled 13.4 17
PDB header: transport protein
Chain: A: PDB Molecule: Solute carrier family 22 member 11
PDBTitle: cryo-em structure of oat4
PDB Entry: PDBe RCSB PDBj
66c6od7A_
not modelled 40.1 36
PDB header: viral protein
Chain: A: PDB Molecule: Portal protein
PDBTitle: herpes simplex virus type 1 (hsv-1) pul6 portal protein, dodecameric complex
PDB Entry: PDBe RCSB PDBj
67c6od7D_
not modelled 40.1 36
PDB header: viral protein
Chain: D: PDB Molecule: Portal protein
PDBTitle: herpes simplex virus type 1 (hsv-1) pul6 portal protein, dodecameric complex
PDB Entry: PDBe RCSB PDBj
68c9je0A_
not modelled 7.2 13
PDB header: transport protein
Chain: A: PDB Molecule: Solute carrier family 22 member 12
PDBTitle: human urat1 bound to benzbromarone
PDB Entry: PDBe RCSB PDBj
69c6m20B_
not modelled 6.0 11
PDB header: transport protein
Chain: B: PDB Molecule: Hexose transporter 1
PDBTitle: crystal structure of plasmodium falciparum hexose transporter pfht1 bound with glucose
PDB Entry: PDBe RCSB PDBj

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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