Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank31Aligned Residues212
% Identity28%Templatec5azdA_
PDB info PDB header: transport proteinChain: A: PDB Molecule: Bacteriorhodopsin PDBTitle: crystal structure of thermophilic rhodopsin.
PDB Entry: PDBe RCSB PDBj
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
Predicted Secondary structure 













Query Sequence  WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF
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Template Sequence  MLSLTIAGMLAAFVFFLLARSYVA. PRYHIALYLSALIVFIAGYHYLRIFESWVGAYQLQ
Template Known Secondary structure  GGGTS
.GGG
Template Predicted Secondary structure 




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   66. ..70.. .......80.........90........ .100.........110......
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Query Sequence  GG. . . . EQNPI. YWARYADWLFTTPLLLLDLALLVDAD. . . . QGTILALVGADGIMIGTG
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Template Conservation   
     
       

  
  





  
  
                     

  
Template Sequence  DGVYVPTGKPFNDFYRYADWLLTVPLLLLELILVLGLTAARTWNLSIKLVVASVLMLALG
Template Known Secondary structure  TT
S



STT

Template Predicted Secondary structure 


















   117..120.........130.........140.........150....... ..160.........170....
Predicted Secondary structure 


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Query Sequence  LVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESM. . RPEVASTFKVLRNVTVV
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Template Conservation    
               
   
      
                       
     
Template Sequence  YVGEVNTEPGPRTLWGALSSIPFFYILYVLWVELGQAIREAKFGPRVLELLGATRLVLLM
Template Known Secondary structure  S







S


Template Predicted Secondary structure 








   175....180.........190. ........200.........210.........
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Query Sequence  LWSAYPVVWLIGSEGAG. IVPLNIETLLFMVLDVSAKVGFGLILLR
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Template Sequence  SWGFYPIAYALGTWLPGGAAQEVAIQIGYSLADLIA. PIYGLLVFA
Template Known Secondary structure  S


S.S
Template Predicted Secondary structure 










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Download:Text version FASTA version

No model constructed - rank, confidence too low




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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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