Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank7Aligned Residues215
% Identity57%Templatec4pxkA_
PDB info PDB header: proton transportChain: A: PDB Molecule: Bacteriorhodopsin PDBTitle: crystal structure of haloarcula marismortui bacteriorhodopsin i d94n mutant
PDB Entry: PDBe RCSB PDBj
ResolutionUNK
Model Dimensions (Å)X:38.876 Y:36.308 Z:61.154

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
Predicted Secondary structure 












Query Sequence  IWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVP
Query Conservation   
     
 
      
            
       

  

  

  

   
     
Alig confidence 



























































Template Conservation                               
        
  

   
             
Template Sequence  IWLWLGTAGMFLGMLYFIARGWGETDGRRQKFYIATILITAIAFVNYLAMALGFGLTFIE
Template Predicted Secondary structure 










   65....70.........80.........90.........100.........110.........120....
Predicted Secondary structure 












Query Sequence  FGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKV
Query Conservation       
 
   




 

 



  
 



        

 
   


 

 

    
Alig confidence 



























































Template Conservation    
        


 
  
 



  
  
                 

  
        
Template Sequence  FGGEQHPIYWARYTDWLFTTPLLLYNLGLLAGADRNTIYSLVSLDVLMIGTGVVATLSAG
Template Predicted Secondary structure 










   125 ....130.........140.........150.........160.........170........
Predicted Secondary structure  ......

Query Sequence  Y. . . . . . SYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSA
Query Conservation   ......  

    

  
 
 
 
 
       
             
     
 
  
Alig confidence 
......




















































Template Conservation                             
                     
       
  
Template Sequence  SGVLSAGAERLVWWGISTAFLLVLLYFLFSSLSGRVANLPSDTRSTFKTLRNLVTVVWLV
Template Predicted Secondary structure 








   179180.........190.........200.........210.........
Predicted Secondary structure 







Query Sequence  YPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLR
Query Conservation 


 
 
   
   
      
 
 



 

  

   
 
Alig confidence 








































Template Conservation 

    
   
   
          
 
   
  
      
Template Sequence  YPVWWLVGSEGLGLVGIGIETAGFMVIDLVAKVGFGIILLR
Template Predicted Secondary structure 






Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in JSmol

Send structure to FirstGlance for more viewing options


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D