Job Description Undefined Confidence 100.00% Date Mon Apr 28 15:12:51 BST 2025
Rank 53 Aligned Residues 205
% Identity 20% Template c7c86A_
PDB info
PDB header: membrane proteinChain: A: PDB Molecule: Sensory opsin A, Channelrhodopsin (ChR) chimera between ChR1 & ChR2
PDBTitle: time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: dark state structure
PDB Entry: PDBe RCSB PDBj
Resolution UNK
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
2 . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 .
Predicted Secondary structure  
Query Sequence  
P E W I W L A L G T A L M G L G T L Y F L V K G M G V S D P D A K K F Y A I T T L V P A I A F T M Y L S M L L G Y G L T
Query Conservation  
                                                                                         
Alig confidence  
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Template Conservation  
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Template Sequence  
A A N I L Q W I T F A L S A L C L M F Y G Y .
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C G W E E I Y V A T I E M I K F I I .
E Y F H E F D E P A V I
Template Predicted Secondary structure  
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62 . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . .
. 100 . . . . . . . . . 110 . . . . . . . .
Predicted Secondary structure  
. . .
Query Sequence  
M V P F G G E Q N P I Y W A R Y A D W L F T T P L L L L D L A L L V D A D .
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Q G T I L A L V G A D G I M I G T G L V
Query Conservation  
                                      . . .                        
Alig confidence  
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Template Conservation  
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Template Sequence  
Y S .
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S N G N K T V W L R Y A E W L L T C P V I L I H L S N L T G L A N D Y N K R T M G L L V S D I G T I V W G T T
Template Predicted Secondary structure  
. . .
   
119 120 . . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . .
. 160 . . . . . . . . . 170 . . . . . . .
Predicted Secondary structure  
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Query Sequence  
G A L T K V Y S Y R F V W W A I S T A A M L Y I L Y V L F F G F T S K A E S M R .
P E V A S T F K V L R N V T V V L W S
Query Conservation  
                                                        .                                
Alig confidence  
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Template Conservation  
            .                                                                                                  
Template Sequence  
A A L S K G .
Y V R V I F F L M G L C Y G I Y T F F N A A K V Y I E A Y H T V P K G R C R Q V V T G M A W L F F V S W G
Template Predicted Secondary structure  
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178 . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . .
Predicted Secondary structure  
Query Sequence  
A Y P V V W L I G S E G A G I V P L N I E T L L F M V L D V S A K V G F G L I L L
Query Conservation  
                                             
Alig confidence  
Template Conservation  
                                                             
Template Sequence  
M F P I L F I L G P E G F G V L S V Y G S T V G H T I I D L M S K N C W G L L G H
Template Predicted Secondary structure  
No model constructed - rank, confidence too low
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