Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank41Aligned Residues214
% Identity24%Templatec6tk7A_
PDB info PDB header: membrane proteinChain: A: PDB Molecule: Sodium pumping rhodopsin PDBTitle: femtosecond to millisecond structural changes in a light-driven sodium pump: dark structure in acidic conditions
PDB Entry: PDBe RCSB PDBj
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60..
Predicted Secondary structure 












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Query Sequence  WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTM. . .
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Template Conservation                              
        
  

   
  
           
Template Sequence  ILTLGYAVMLAGLLYFILTIKNVDDKKFQMSNILSAVVMVSAFLLLYAQAQNWTSSFTFN
Template Known Secondary structure  TGGGS
.GGG
Template Predicted Secondary structure 








   63......70.........80.........90..... ....100.........110.
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Query Sequence  . . . . . . VPFGGEQNPIYWARYADWLFTTPLLLLDLALLV. . . . . DADQGTILALVGADGI
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Template Conservation                     




  





  
                         
Template Sequence  EEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSSLTTSKFSSVRNQFWFSGAM
Template Known Secondary structure  TTTT
TTS



TGGGTS...SSS
Template Predicted Secondary structure 




















   112.......120...... ...130.........140.........150.........160.........
Predicted Secondary structure 

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Query Sequence  MIGTGLVGALTKVYS. . YRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLR
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Template Conservation 

  
  
                

   
  
   
       
             
 
Template Sequence  MIITGYIGQFYEVSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIW
Template Known Secondary structure  TTTT
TTS
Template Predicted Secondary structure 






   170.........180....... ..190 .........200.........210.........
Predicted Secondary structure  ....


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Query Sequence  NVTVVLWSAYPVVWLIGS. . . . EGA. . GIVPLNIETLLFMVLDVSAKVGFGLILLR
Query Conservation      
 
  


 
 
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Template Conservation        
  


   
       
     
        
 
 
   
  
   
  
Template Sequence  ILFLISWTLYPGAYLMPYLTGVDGFLYSEDGVMARQLVYTIADVSSKVIYGVLLGN
Template Known Secondary structure  GGGTT
TTSTTTT





Template Predicted Secondary structure 













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No model constructed - rank, confidence too low




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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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