Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank54Aligned Residues206
% Identity19%Templatec9go1A_
PDB info PDB header: membrane proteinChain: A: PDB Molecule: Archaeal-type opsin 1, Archaeal-type opsin 2 PDBTitle: c1c2 channelrhodopsin - smx dark structure
PDB Entry: PDBe RCSB PDBj
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
Predicted Secondary structure 













Query Sequence  PEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLT
Query Conservation   
  
     
 
      
            
       

  

  

  

   
  
Alig confidence 





















.......

















.











Template Conservation                        .......                  . 
          
Template Sequence  AANILQWITFALSALCLMFYGY. . . . . . . CGWEEIYVATIEMIKFII. EYFHEFDEPAVI
Template Predicted Secondary structure  .......

.



   62.......70.........80.........90........ .100.........110........
Predicted Secondary structure 










...
Query Sequence  MVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDAD. . . QGTILALVGADGIMIGTGLV
Query Conservation          
 
   




 

 



  
 



  ...      

 
   


 

 
Alig confidence 
...
































...



















Template Conservation   ...   
  
   

  
 

 



  
  
 
           
      

  
  
Template Sequence  Y. . . SSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGTIVWGTT
Template Predicted Secondary structure  ...









   119120.........130.........140.........150........ .160.........170.......
Predicted Secondary structure 



.
Query Sequence  GALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMR. PEVASTFKVLRNVTVVLWS
Query Conservation 

       

    

  
 
 
 
 
       
    .         
     
 
 
Alig confidence 





.
































.


















Template Conservation 
     .                    
                      
     
 
 
Template Sequence  AALSKG. YVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWG
Template Predicted Secondary structure  .



   178.180.........190.........200.........210.........
Predicted Secondary structure 







Query Sequence  AYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLR
Query Conservation   


 
 
   
   
      
 
 



 

  

   
 
Alig confidence 









































Template Conservation   


 
 
   
   
      
   
 
   
         
Template Sequence  MFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHY
Template Predicted Secondary structure 







Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D