Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank44Aligned Residues213
% Identity23%Templatec8qleA_
PDB info PDB header: membrane proteinChain: A: PDB Molecule: Bacteriorhodopsin-like protein PDBTitle: crystal structure of the light-driven sodium pump ernar in the monomeric form at ph 4.6
PDB Entry: PDBe RCSB PDBj
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60....
Predicted Secondary structure 












Query Sequence  IWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVP
Query Conservation   
     
 
      
            
       

  

  

  

   
     
Alig confidence 























.


































Template Conservation                          .    
    
   
  

   
  
          
Template Sequence  HLFAFSTAVFLAGLVYFAMTARTT. APNYRLSANISAVVMVSAALELGQLWLLWNESFQW
Template Known Secondary structure  S.
Template Predicted Secondary structure 



.


   65. ...70.. .......80.........90........ .100.........110..
Predicted Secondary structure 

.......




.



....
Query Sequence  FG. . . . . . . GEQNPI. YWARYADWLFTTPLLLLDLALLVDAD. . . . QGTILALVGADGIM
Query Conservation    .......   
 
.   




 

 



  
 



  ....      

 
   
Alig confidence 

.......





.

























....













Template Conservation      
      
       

  
 






  
  
              
      
Template Sequence  AELQGSFVPVAGERFSNGYRYMNWLIDVPMLATQLVVVCGFVGTELRNRWAKLTIAGVLM
Template Known Secondary structure  TTTT.TT



GGGT

Template Predicted Secondary structure 





















   113......120... . .....130.........140.........150.........160..
Predicted Secondary structure 
.........
.

Query Sequence  IGTGLVGALTK. . . . . . . . . V. YSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVA
Query Conservation 

 

 

   ......... .   

    

  
 
 
 
 
       
        
Alig confidence 










.........
.





































Template Conservation 
  
  
                   
     
   
      
                
Template Sequence  ILTGYVGQYFEPAVAGVPGYEGAEQFWIWGIISTAFFVWMLLILANAVRNPQGAPSDEVR
Template Known Secondary structure  TTTT
TT


S
SS


Template Predicted Secondary structure 














   163......170.........180.........190.........200.........210.........
Predicted Secondary structure 







Query Sequence  STFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLR
Query Conservation       
     
 
  


 
 
   
   
      
 
 



 

  

   
 
Alig confidence 














































.








Template Conservation       
       
  


   
   
              
 

  .  

  
  
Template Sequence  SRLKFCFWFLLATWSIYPFAYAMPLFAPTADGVVVRQVIYTVADVSS. LVFGVILSQ
Template Known Secondary structure  TTGGGG


S.S
Template Predicted Secondary structure 







.
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D