Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank13Aligned Residues204
% Identity48%Templatec8xhwD_
PDB info PDB header: membrane proteinChain: D: PDB Molecule: Bacteriorhodopsin-II-like protein PDBTitle: haloquadratum walsbyi middle rhodopsin mutant - d84n
PDB Entry: PDBe RCSB PDBj
ResolutionUNK
Model Dimensions (Å)X:34.501 Y:41.020 Z:62.817

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
Predicted Secondary structure 













Query Sequence  WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF
Query Conservation 
     
 
      
            
       

  

  

  

   
      
Alig confidence 























































....
Template Conservation                              
        
  

   
  
    
  ....
Template Sequence  WLWIGTIGMVLGTVYFAVRGRGSTDPEQQTYYIITTLIPAIAAAAYLAMATGLGVI. . . .
Template Predicted Secondary structure 











....
   66...70.........80.........90.........100.........110.........120.. ..
Predicted Secondary structure 









.

Query Sequence  GGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALT. KV
Query Conservation      
 
   




 

 



  
 



        

 
   


 

 

  .  
Alig confidence  ......


















































.

Template Conservation  ......    


 
  
 



  
  
                 

  
         
Template Sequence  . . . . . . IYWARYANWLLTTPLLIIDLALVAGARKQTLYKLIIIDAIMILGGLAGSMMQQG
Template Predicted Secondary structure  ......






   125....130.........140.........150.........160.........170.........180....
Predicted Secondary structure 

Query Sequence  YSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWL
Query Conservation     

    

  
 
 
 
 
       
             
     
 
  


 
 
Alig confidence 



























































Template Conservation                   
   
                     
       
  


   
Template Sequence  AVIRIVWWAVSTAAFIILLYYLLGELSERARSRSAETGIVFNRLRNITLGLWALYPIVWI
Template Predicted Secondary structure 

   185.... 190.........200.........210.........
Predicted Secondary structure 

.





Query Sequence  IGSEG. AGIVPLNIETLLFMVLDVSAKVGFGLILLR
Query Conservation 
   
.   
      
 
 



 

  

   
 
Alig confidence 




.





























Template Conservation 
   
    
          
 
   
      
  
Template Sequence  LGTGGGFGIIAVTTEIMLYVMLDIGTKIGFGAVLLE
Template Predicted Secondary structure 








Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in JSmol

Send structure to FirstGlance for more viewing options


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D