 |
Job Description | Undefined | Confidence | 100.00% | Date | Mon Apr 28 15:12:51 BST 2025 |
Rank | 59 | Aligned Residues | 212 |
% Identity | 14% | Template | c6eidB_ |
PDB info |
PDB header: membrane protein | Chain: B: PDB Molecule: Archaeal-type opsin 2 |
PDBTitle: crystal structure of wild-type channelrhodopsin 2
PDB Entry: PDBe RCSB PDBj
|
Resolution | UNK |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query Sequence |   |
R | P | E | W | I | W | L | A | L | G | T | A | L | M | G | L | G | T | L | Y | F | L | V | K | G | M | G | V | S | D | P | D | A | K | K | F | Y | A | I | T | T | L | V | P | A | I | A | F | T | M | Y | L | S | M | L | L | G | Y | G | L |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
| . |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | A | S | N | V | L | Q | W | L | A | A | G | F | S | I | L | L | L | M | F | Y | A | Y | Q | T | W | K | S | T | C | G | W | . |
E | E | I | Y | V | C | A | I | E | M | V | K | V | I | L | E | F | F | . |
F | E | F | K | N | P | S | M |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |
|
|
|  |  |
  |   |
61 | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |   |
T | M | V | P | F | G | G | E | Q | N | P | I | Y | W | A | R | Y | A | D | W | L | F | T | T | P | L | L | L | L | D | L | A | L | L | V | D | A | D | . |
. |
. |
Q | G | T | I | L | A | L | V | G | A | D | G | I | M | I | G | T | G | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|
|
|   |
|
|   |
|
|
|
|   |   |
|   |
|
|
|
|   |   | . | . | . |   |   |   |   |   |   |
|
|   |
|   |   |   |
|
|
|   |
|
|
Alig confidence |   |
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . | . |   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |
|   |
|
|
|
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
Template Sequence |   |
L | Y | . |
. |
. |
L | A | T | G | H | R | V | Q | W | L | R | Y | A | E | W | L | L | T | C | P | V | I | L | I | H | L | S | N | L | T | G | L | S | N | D | Y | S | R | R | T | M | G | L | L | V | S | D | I | G | T | I | V | W | G | A |
Template Predicted Secondary structure |   |
 |  | . | . | . |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | |
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |   |
V | G | A | L | T | K | V | Y | S | Y | R | F | V | W | W | A | I | S | T | A | A | M | L | Y | I | L | Y | V | L | F | F | G | F | T | S | K | A | E | S | M | R | . |
P | E | V | A | S | T | F | K | V | L | R | N | V | T | V | V | L | W |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|   |   |
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |   | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
Template Sequence |   |
T | S | A | M | A | T | G | . |
Y | V | K | V | I | F | F | C | L | G | L | C | Y | G | A | N | T | F | F | H | A | A | K | A | Y | I | E | G | Y | H | T | V | P | K | G | R | C | R | Q | V | V | T | G | M | A | W | L | F | F | V | S | W |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query Sequence |   |
S | A | Y | P | V | V | W | L | I | G | S | E | G | A | G | I | V | P | L | N | I | E | T | L | L | F | M | V | L | D | V | S | A | K | V | G | F | G | L | I | L | L | R |
Query Conservation |   |
  |   |
|
|
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|   |   |
|
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   | . |   |   |
|
|   |   |   |   |   |
Template Sequence |   |
G | M | F | P | I | L | F | I | L | G | P | E | G | F | G | V | L | S | V | Y | G | S | T | V | G | H | T | I | I | D | L | M | S | . |
N | C | W | G | L | L | G | H | Y |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
No model constructed - rank, confidence too low
Phyre is now FREE for commercial users!
All images and data generated by Phyre2 are free to use in any
publication with acknowledgement
Accessibility Statement