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Job DescriptionUndefined
Confidence100.00%DateMon Apr 28 15:12:51 BST 2025
Rank51Aligned Residues205
% Identity20%Templatec8yelA_
PDB info PDB header: membrane proteinChain: A: PDB Molecule: Cation channel rhodopsin 4 PDBTitle: cryo-em structure of the channelrhodopsin gtccr4
PDB Entry: PDBe RCSB PDBj
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.. .......30....... ..40.........50......
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Query Sequence  WLALGTALMGLGTLYFL. . VKGMGVSDPDAKKFY. . . . . . . AITTLVPAIAFTMYLSMLL
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Template Sequence  VDWLGFLCLLGASLALMYKLMSFKGPDGD. QEFFVGYREEKCLSIYVNLIAAITYWGRIC
Template Known Secondary structure  T

TTTT
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TTTTTT
GGGG
Template Predicted Secondary structure 






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   57..60.........70.........80.........90.........100.........110......
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Query Sequence  GYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTG
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Template Sequence  AHFNNDM. . . GLSLSVNYFKYLDYIFTCPILTLDLLWSLNLPYKITYSLFV. . GLTIACG
Template Known Secondary structure  TTS
...GGGGGGGSSTTSGGGGTTT
SSTT..
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   117..120.........130.........140.........150.........160.........170......
Predicted Secondary structure 



Query Sequence  LVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLW
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Template Conservation          .   
     
   
  
   
                     
       
Template Sequence  VFCNAFEP. PARYLWFMFGCFIFAFTWISIIRLVYARFQQFLNKIRAPLKLSLTLYFSIW
Template Known Secondary structure  S
.TSS
Template Predicted Secondary structure  .

   177..180.........190.........200.........210.........
Predicted Secondary structure 







Query Sequence  SAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLR
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Template Sequence  CGYPALWLL. TEFGA. ISQLAAHVTTVIMDVAAKSVYGFALLK
Template Known Secondary structure  .TTS.S





T
Template Predicted Secondary structure  .




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No model constructed - rank, confidence too low




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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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