PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6sqgE_

Fold library id	PDB Header	Molecule	Title
c6sqgE_	1.90	PDB header: membrane protein	Chain: E: PDB Molecule: viral rhodopsin olpvrii;

Links to external resources
Added to library: Sat Nov 9 08:22:59 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S D L I E Y S F Y L T Y A F L M T T G T I T F I E A L R T K N E S V R H I L N L E T C I S V V A A F F Y S N F I G K L E H I N Y E E I N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N R Y V D W A I T T P I M L L V L V L A F R V N Q T N K A M V K F S D F M I I L G M N Y G M L G T G Y L G D I G V I H K T M G T V L G F L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F G G L F Y K L N T L R T S N A S N D L L Y G A F F V L W A L Y G V F Y Q M E Q L P R N V G Y N V L D L F S K C F V G I Y F W A F Y A K I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T S
T T

. .

Sequence T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	D	L	I	E	Y	S	F	Y	L	T	Y	A	F	L	M	T	T	G	T	I	T	F	I	E	A	L	R	T	K	N	E	S	V	R	H	I	L	N	L	E	T	C	I	S	V	V	A	A	F	F	Y	S	N	F	I	G	K	L	E	H	I	N	Y	E	E	I	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T		S																												T		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	R	Y	V	D	W	A	I	T	T	P	I	M	L	L	V	L	V	L	A	F	R	V	N	Q	T	N	K	A	M	V	K	F	S	D	F	M	I	I	L	G	M	N	Y	G	M	L	G	T	G	Y	L	G	D	I	G	V	I	H	K	T	M	G	T	V	L	G	F	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											S																												T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	G	G	L	F	Y	K	L	N	T	L	R	T	S	N	A	S	N	D	L	L	Y	G	A	F	F	V	L	W	A	L	Y	G	V	F	Y	Q	M	E	Q	L	P	R	N	V	G	Y	N	V	L	D	L	F	S	K	C	F	V	G	I	Y	F	W	A	F	Y	A	K	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T				S																					T	T	S																	T													T
	.	.
Sequence	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)