PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6kfqA_

Fold library id	PDB Header	Molecule	Title
c6kfqA_	1.84	PDB header: transport protein	Chain: A: PDB Molecule: rhodopsin;

Links to external resources
Added to library: Sat Apr 11 08:28:15 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E A L W L W I G F V G M L L G T L Y F A F L L T N A P E G T R Y F F V I T A T I T G I A A I A Y L V M A T G S G S T V L P D G R E F Y W A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
T T
S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R Y I D W V I T T P L L L L D L C L L A L A D P R R N V T F I A S L I A L D V V M I L T G L W A G A T V N V A G R A I L F I I S T A A F I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V L Y L L V S R L F A E A S R R T P A V A Q I F R T L A V L T I V L W I C Y P I V W L I G T E G F G A V S L S V E V F L F M V L D L L A K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S T T T T
S S

. . . . . . . . . 220 . . . . . . . . .

Sequence G F G L L L L S S R Q A L S D I G S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	A	L	W	L	W	I	G	F	V	G	M	L	L	G	T	L	Y	F	A	F	L	L	T	N	A	P	E	G	T	R	Y	F	F	V	I	T	A	T	I	T	G	I	A	A	I	A	Y	L	V	M	A	T	G	S	G	S	T	V	L	P	D	G	R	E	F	Y	W	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								G	G	G			T	T																								T	T		S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	Y	I	D	W	V	I	T	T	P	L	L	L	L	D	L	C	L	L	A	L	A	D	P	R	R	N	V	T	F	I	A	S	L	I	A	L	D	V	V	M	I	L	T	G	L	W	A	G	A	T	V	N	V	A	G	R	A	I	L	F	I	I	S	T	A	A	F	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S		G	G	G																											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	L	Y	L	L	V	S	R	L	F	A	E	A	S	R	R	T	P	A	V	A	Q	I	F	R	T	L	A	V	L	T	I	V	L	W	I	C	Y	P	I	V	W	L	I	G	T	E	G	F	G	A	V	S	L	S	V	E	V	F	L	F	M	V	L	D	L	L	A	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T						T	T	S																													S	T	T	T	T		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	G	F	G	L	L	L	L	S	S	R	Q	A	L	S	D	I	G	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)