PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6eyuA_

Fold library id	PDB Header	Molecule	Title
c6eyuA_	2.50	PDB header: membrane protein	Chain: A: PDB Molecule: bacteriorhodopsin;

Links to external resources
Added to library: Sat Dec 16 08:26:05 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M V Y E A I T A G G F G S Q P F I L A Y I I T A M I S G L L F L Y L P R K L D V P Q K F G I I H F F I V V W S G L M Y T N F L N Q S F L S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T T
S
T T G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y A W Y M D W M V S T P L I L L A L G L T A F H G A D T K R Y D L L G A L L G A E F T L V I T G L L A Q A Q G S I T P Y Y V G V L L L L G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T T
S
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V Y L L A K P F R E I A E E S S D G L A R A Y K I L A G Y I G I F F L S Y P T V W Y I S G I D A L P G S L N I L D P T Q T S I A L V V L P F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
B
T T S
S
B

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence F C K Q V Y G F L D M Y L I H K A E L E H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	V	Y	E	A	I	T	A	G	G	F	G	S	Q	P	F	I	L	A	Y	I	I	T	A	M	I	S	G	L	L	F	L	Y	L	P	R	K	L	D	V	P	Q	K	F	G	I	I	H	F	F	I	V	V	W	S	G	L	M	Y	T	N	F	L	N	Q	S	F	L	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T		T	T																										T																									S			T	T	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	A	W	Y	M	D	W	M	V	S	T	P	L	I	L	L	A	L	G	L	T	A	F	H	G	A	D	T	K	R	Y	D	L	L	G	A	L	L	G	A	E	F	T	L	V	I	T	G	L	L	A	Q	A	Q	G	S	I	T	P	Y	Y	V	G	V	L	L	L	L	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G																							T	T		S																												T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	Y	L	L	A	K	P	F	R	E	I	A	E	E	S	S	D	G	L	A	R	A	Y	K	I	L	A	G	Y	I	G	I	F	F	L	S	Y	P	T	V	W	Y	I	S	G	I	D	A	L	P	G	S	L	N	I	L	D	P	T	Q	T	S	I	A	L	V	V	L	P	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T							T	T	S																													B			T	T	S			S				B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	F	C	K	Q	V	Y	G	F	L	D	M	Y	L	I	H	K	A	E	L	E	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T																		T