Phyre 2 Results for P48940

Email	l.a.kelley@imperial.ac.uk
Description	P48940
Date	Tue Jul 17 17:05:10 BST 2012
Unique Job ID	09716ae2790fb751

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c3gtyS_

Top template information

PDB header:chaperone/ribosomal protein
Chain: S: PDB Molecule:30s ribosomal protein s7;
PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone

Confidence and coverage

Confidence:

100.0%

Coverage:

94%

147 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M P R K G S V P K R D V L P D P I H N S K L V T K L I N K I M L D G K R G T A Q R I L Y S A F D L V E Q R S G R D A L E

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence V F E E A I N N I M P V L E V K A R R V G G S N Y Q V P V E V R P E R R T T L G L R W L V N Y A R L R G E K T M E D R L

Secondary structure

SS confidence

Disorder
? ?
? ? ? ? ? ? ?
? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . .

Sequence A N E I L D A A N N T G G A V K K R E D T H K M A E A N K A F A H Y R W

Secondary structure

SS confidence

Disorder
? ? ? ?
? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 3gty chain S

Region: 10 - 156
Aligned: 147
Modelled: 147
Confidence: 100.0%
Identity: 56%
PDB header:chaperone/ribosomal protein
Chain: S: PDB Molecule:30s ribosomal protein s7;
PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone

Phyre2

PDB 3bbn chain G

Region: 2 - 155
Aligned: 154
Modelled: 154
Confidence: 100.0%
Identity: 44%
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.

Phyre2

PDB 2qal chain G domain 1

Region: 3 - 152
Aligned: 150
Modelled: 150
Confidence: 100.0%
Identity: 59%
Fold: Ribosomal protein S7
Superfamily: Ribosomal protein S7
Family: Ribosomal protein S7

Phyre2

PDB 1vs5 chain G

Region: 3 - 152
Aligned: 150
Modelled: 150
Confidence: 100.0%
Identity: 59%
PDB header:ribosome
Chain: G: PDB Molecule:30s ribosomal protein s7;
PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with the antibiotic kasugamyin3 at 3.5a resolution. this file contains the 30s subunit of4 one 70s ribosome. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400.

Phyre2

PDB 1rss chain A

Region: 12 - 156
Aligned: 140
Modelled: 145
Confidence: 100.0%
Identity: 51%
Fold: Ribosomal protein S7
Superfamily: Ribosomal protein S7
Family: Ribosomal protein S7

Phyre2

PDB 1hus chain A

Region: 10 - 148
Aligned: 139
Modelled: 139
Confidence: 100.0%
Identity: 76%
Fold: Ribosomal protein S7
Superfamily: Ribosomal protein S7
Family: Ribosomal protein S7

Phyre2

PDB 2xzm chain G

Region: 16 - 149
Aligned: 134
Modelled: 134
Confidence: 100.0%
Identity: 27%
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1

Phyre2

PDB 1iqv chain A

Region: 19 - 149
Aligned: 131
Modelled: 131
Confidence: 100.0%
Identity: 31%
Fold: Ribosomal protein S7
Superfamily: Ribosomal protein S7
Family: Ribosomal protein S7

Phyre2

PDB 1s1h chain G

Region: 9 - 149
Aligned: 141
Modelled: 141
Confidence: 100.0%
Identity: 27%
PDB header:ribosome
Chain: G: PDB Molecule:40s ribosomal protein s5;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.

Phyre2

PDB 3izb chain F

Region: 18 - 149
Aligned: 132
Modelled: 132
Confidence: 100.0%
Identity: 28%
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

Phyre2

PDB 2zkq chain G

Region: 19 - 149
Aligned: 130
Modelled: 131
Confidence: 100.0%
Identity: 28%
PDB header:ribosomal protein/rna
Chain: G: PDB Molecule:rna helix;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map

Phyre2

PDB 2kn8 chain A

Region: 29 - 73
Aligned: 45
Modelled: 45
Confidence: 28.8%
Identity: 22%
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89

Phyre2

PDB 3bul chain A domain 1

Region: 21 - 104
Aligned: 75
Modelled: 84
Confidence: 27.9%
Identity: 19%
Fold: Methionine synthase domain-like
Superfamily: Methionine synthase domain
Family: Methionine synthase domain

Phyre2

PDB 1u5t chain A domain 1

Region: 62 - 90
Aligned: 29
Modelled: 29
Confidence: 27.1%
Identity: 14%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Vacuolar sorting protein domain

Phyre2

PDB 1o7f chain A domain 1

Region: 60 - 127
Aligned: 61
Modelled: 68
Confidence: 21.2%
Identity: 15%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: DEP domain

Phyre2

PDB 2zme chain A

Region: 62 - 135
Aligned: 74
Modelled: 74
Confidence: 20.4%
Identity: 19%
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex

Phyre2

PDB 3cuq chain A

Region: 62 - 135
Aligned: 74
Modelled: 74
Confidence: 18.9%
Identity: 19%
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex

Phyre2

PDB 1u5t chain A

Region: 62 - 135
Aligned: 74
Modelled: 74
Confidence: 15.9%
Identity: 16%
PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex

Phyre2

PDB 2hv8 chain D

Region: 115 - 154
Aligned: 35
Modelled: 40
Confidence: 10.5%
Identity: 26%
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3

Phyre2

PDB 1kx9 chain B

Region: 17 - 34
Aligned: 18
Modelled: 18
Confidence: 9.2%
Identity: 28%
Fold: alpha-alpha superhelix
Superfamily: Chemosensory protein Csp2
Family: Chemosensory protein Csp2

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	P	R	K	G	S	V	P	K	R	D	V	L	P	D	P	I	H	N	S	K	L	V	T	K	L	I	N	K	I	M	L	D	G	K	R	G	T	A	Q	R	I	L	Y	S	A	F	D	L	V	E	Q	R	S	G	R	D	A	L	E
Secondary structure
SS confidence
Disorder	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	V	F	E	E	A	I	N	N	I	M	P	V	L	E	V	K	A	R	R	V	G	G	S	N	Y	Q	V	P	V	E	V	R	P	E	R	R	T	T	L	G	L	R	W	L	V	N	Y	A	R	L	R	G	E	K	T	M	E	D	R	L
Secondary structure
SS confidence
Disorder												?	?					?	?	?	?	?	?	?																										?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Sequence	A	N	E	I	L	D	A	A	N	N	T	G	G	A	V	K	K	R	E	D	T	H	K	M	A	E	A	N	K	A	F	A	H	Y	R	W
Secondary structure
SS confidence
Disorder												?	?	?	?																?	?	?	?	?	?
Disorder confidence