Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A0Q4
DateTue Jul 17 17:05:08 BST 2012
Unique Job ID110c69bdcb90a068

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3kbyB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein from staphylococcus aureus
Confidence and coverage
Confidence:100.0% Coverage: 91%
142 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDN
Secondary structure 
SS confidence 
Disorder  ????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150......
Sequence  VNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3kby chain B

3D model

Region: 15 - 156
Aligned: 142
Modelled: 141
Confidence: 100.0%
Identity: 95%
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein from staphylococcus aureus

Phyre2

PDB 2w6k chain A domain 1

3D model

Region: 93 - 129
Aligned: 37
Modelled: 37
Confidence: 31.4%
Identity: 27%
Fold: CobE/GbiG C-terminal domain-like
Superfamily: CobE/GbiG C-terminal domain-like
Family: CobE/GbiG C-terminal domain-like

Phyre2

PDB 2l9s chain A

3D model

Region: 104 - 130
Aligned: 27
Modelled: 27
Confidence: 25.1%
Identity: 33%
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 12;
PDBTitle: solution structure of pf1 sid1-msin3a pah2 complex

Phyre2

PDB 3by5 chain A

3D model

Region: 93 - 131
Aligned: 39
Modelled: 39
Confidence: 22.5%
Identity: 28%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein;
PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58

Phyre2

PDB 3by5 chain A domain 1

3D model

Region: 93 - 131
Aligned: 39
Modelled: 39
Confidence: 22.5%
Identity: 28%
Fold: CobE/GbiG C-terminal domain-like
Superfamily: CobE/GbiG C-terminal domain-like
Family: CobE/GbiG C-terminal domain-like

Phyre2

PDB 3bpq chain C

3D model

Region: 1 - 12
Aligned: 12
Modelled: 12
Confidence: 18.1%
Identity: 67%
PDB header:toxin
Chain: C: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii

Phyre2

PDB 1eu3 chain A domain 1

3D model

Region: 78 - 96
Aligned: 17
Modelled: 19
Confidence: 14.8%
Identity: 47%
Fold: OB-fold
Superfamily: Bacterial enterotoxins
Family: Superantigen toxins, N-terminal domain

Phyre2

PDB 1uf0 chain A

3D model

Region: 56 - 87
Aligned: 31
Modelled: 32
Confidence: 14.5%
Identity: 26%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: Doublecortin (DC)
Family: Doublecortin (DC)

Phyre2

PDB 1jrx chain A

3D model

Region: 77 - 123
Aligned: 47
Modelled: 47
Confidence: 13.9%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina

Phyre2

PDB 1r17 chain A domain 2

3D model

Region: 38 - 99
Aligned: 53
Modelled: 62
Confidence: 12.2%
Identity: 19%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Fibrinogen-binding domain

Phyre2

PDB 2qne chain A

3D model

Region: 25 - 48
Aligned: 24
Modelled: 24
Confidence: 12.1%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution

Phyre2

PDB 3o0l chain B

3D model

Region: 88 - 98
Aligned: 10
Modelled: 11
Confidence: 11.1%
Identity: 70%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution

Phyre2

PDB 2bps chain A

3D model

Region: 103 - 135
Aligned: 33
Modelled: 33
Confidence: 9.2%
Identity: 18%
PDB header:ubiquitin
Chain: A: PDB Molecule:yukd protein;
PDBTitle: ubiquitin-like protein yukd of bacillus subtilis

Phyre2

PDB 3l9k chain Z

3D model

Region: 20 - 32
Aligned: 13
Modelled: 13
Confidence: 8.8%
Identity: 38%
PDB header:motor protein
Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure

Phyre2

PDB 2ysf chain A

3D model

Region: 37 - 45
Aligned: 9
Modelled: 9
Confidence: 8.7%
Identity: 33%
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch

Phyre2

PDB 1xg0 chain C

3D model

Region: 95 - 114
Aligned: 20
Modelled: 20
Confidence: 8.2%
Identity: 40%
Fold: Globin-like
Superfamily: Globin-like
Family: Phycocyanin-like phycobilisome proteins

Phyre2

PDB 1eyx chain B

3D model

Region: 95 - 114
Aligned: 20
Modelled: 20
Confidence: 8.2%
Identity: 40%
Fold: Globin-like
Superfamily: Globin-like
Family: Phycocyanin-like phycobilisome proteins

Phyre2

PDB 1j3k chain A

3D model

Region: 1 - 9
Aligned: 9
Modelled: 9
Confidence: 7.1%
Identity: 44%
Fold: Dihydrofolate reductase-like
Superfamily: Dihydrofolate reductase-like
Family: Dihydrofolate reductases

Phyre2

PDB 2ysg chain A

3D model

Region: 34 - 45
Aligned: 12
Modelled: 12
Confidence: 7.1%
Identity: 17%
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4

Phyre2

PDB 2y9x chain G

3D model

Region: 129 - 136
Aligned: 8
Modelled: 8
Confidence: 6.9%
Identity: 75%
PDB header:oxidoreductase
Chain: G: PDB Molecule:lectin-like fold protein;
PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone

Phyre2
1
c3kbyB_
2
d2w6ka1
3
c2l9sA_
4
c3by5A_
5
d3by5a1
6
c3bpqC_
7
d1eu3a1
8
d1uf0a_
9
c1jrxA_
10
d1r17a2
11
c2qneA_
12
c3o0lB_
13
c2bpsA_
14
c3l9kZ_
15
c2ysfA_
16
d1xg0c_
17
d1eyxb_
18
d1j3ka_
19
c2ysgA_
20
c2y9xG_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kbyB_
100.0 95 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein from staphylococcus aureus
2d2w6ka1
31.4 27 Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
3c2l9sA_
25.1 33 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 12;
PDBTitle: solution structure of pf1 sid1-msin3a pah2 complex
4c3by5A_
22.5 28 PDB header:biosynthetic protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein;
PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
5d3by5a1
22.5 28 Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
6c3bpqC_
18.1 67 PDB header:toxin
Chain: C: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
7d1eu3a1
14.8 47 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
8d1uf0a_
14.5 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
9c1jrxA_
13.9 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
10d1r17a2
12.2 19 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Fibrinogen-binding domain
11c2qneA_
12.1 17 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution
12c3o0lB_
11.1 70 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
13c2bpsA_
9.2 18 PDB header:ubiquitin
Chain: A: PDB Molecule:yukd protein;
PDBTitle: ubiquitin-like protein yukd of bacillus subtilis
14c3l9kZ_
8.8 38 PDB header:motor protein
Chain: Z: PDB Molecule:dynein intermediate chain, cytosolic;
PDBTitle: insights into dynein assembly from a dynein intermediate chain-light2 chain roadblock structure
15c2ysfA_
8.7 33 PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
16d1xg0c_
8.2 40 Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
17d1eyxb_
8.2 40 Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
18d1j3ka_
7.1 44 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
19c2ysgA_
7.1 17 PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
20c2y9xG_
6.9 75 PDB header:oxidoreductase
Chain: G: PDB Molecule:lectin-like fold protein;
PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone
21c3ctrA_
not modelled 6.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of the rrm-domain of the poly(a)-specific2 ribonuclease parn bound to m7gtp
22c2dmvA_
not modelled 6.9 33 PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)
23d1a21a2
not modelled 6.7 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
24c2dnfA_
not modelled 6.6 16 PDB header:protein binding
Chain: A: PDB Molecule:doublecortin domain-containing protein 2;
PDBTitle: solution structure of rsgi ruh-062, a dcx domain from human
25d1df7a_
not modelled 6.6 33 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
26d1mjda_
not modelled 6.5 19 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
27d1ha7b_
not modelled 6.3 30 Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
28d2fzia1
not modelled 6.3 67 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
29d1kmva_
not modelled 6.2 44 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
30c1ymzA_
not modelled 6.2 18 PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
31c2zajA_
not modelled 6.2 44 PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1)
32c2blcA_
not modelled 6.2 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase-thymidylate synthase;
PDBTitle: sp21 double mutant p. vivax dihydrofolate reductase in2 complex with des-chloropyrimethamine
33c3cseA_
not modelled 6.1 67 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b)
34c1wr4A_
not modelled 6.1 56 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
35d1aoea_
not modelled 6.0 67 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
36c1zdrB_
not modelled 5.9 67 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrofolate reductase;
PDBTitle: dhfr from bacillus stearothermophilus
37c4ehpB_
not modelled 5.9 22 PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: crystal structure of human vinculin head domain (residues 1-252) in2 complex with alpha-catenin (residues 277-382)
38d2f21a1
not modelled 5.9 33 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
39c3opwA_
not modelled 5.7 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:dna damage-responsive transcriptional repressor rph1;
PDBTitle: crystal structure of the rph1 catalytic core
40c3dg8B_
not modelled 5.7 44 PDB header:oxidoreductase, transferase
Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate
PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump
41c2ysdA_
not modelled 5.7 18 PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the first ww domain from the human2 membrane-associated guanylate kinase, ww and pdz domain-3 containing protein 1. magi-1
42d1phnb_
not modelled 5.7 30 Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
43d2jmfa1
not modelled 5.6 44 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
44c3tq8A_
not modelled 5.5 44 PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: structure of the dihydrofolate reductase (fola) from coxiella burnetii2 in complex with trimethoprim
45d1js8a2
not modelled 5.5 15 Fold:C-terminal domain of mollusc hemocyanin
Superfamily:C-terminal domain of mollusc hemocyanin
Family:C-terminal domain of mollusc hemocyanin
46c3f0uX_
not modelled 5.5 67 PDB header:oxidoreductase
Chain: X: PDB Molecule:trimethoprim-sensitive dihydrofolate reductase;
PDBTitle: staphylococcus aureus f98y mutant dihydrofolate reductase2 complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-3 phenylphenyl)but-1-ynyl]-6-methylpyrimidine
47c2j96B_
not modelled 5.5 25 PDB header:photosynthesis
Chain: B: PDB Molecule:phycoerythrocyanin alpha chain;
PDBTitle: the e-configuration of alfa-phycoerythrocyanin
48c2lawA_
not modelled 5.4 33 PDB header:signaling protein/transcription
Chain: A: PDB Molecule:yorkie homolog;
PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide
49c4ei0B_
not modelled 5.4 26 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized hypothetical protein;
PDBTitle: crystal structure of a hypothetical protein (parmer_03218) from2 parabacteroides merdae atcc 43184 at 2.00 a resolution
50d8dfra_
not modelled 5.4 44 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
51c2yadA_
not modelled 5.4 53 PDB header:surfactant protein
Chain: A: PDB Molecule:surfactant protein c brichos domain;
PDBTitle: brichos domain of surfactant protein c precursor protein
52d1tk7a2
not modelled 5.3 44 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
53d1ra9a_
not modelled 5.3 56 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
54c1jmuE_
not modelled 5.2 64 PDB header:viral protein
Chain: E: PDB Molecule:protein mu-1;
PDBTitle: crystal structure of the reovirus mu1/sigma3 complex
55d1lnla2
not modelled 5.2 20 Fold:C-terminal domain of mollusc hemocyanin
Superfamily:C-terminal domain of mollusc hemocyanin
Family:C-terminal domain of mollusc hemocyanin
56c2lazA_
not modelled 5.1 0 PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
57c2lb0A_
not modelled 5.1 0 PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
58c1mhmA_
not modelled 5.0 23 PDB header:lyase
Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase;
PDBTitle: crystal structure of s-adenosylmethionine decarboxylase2 from potato

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite