Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	I	Y	K	I	P	L	P	L	N	I	L	E	A	A	R	E	R	I	T	W	T	L	N	T	L	P	R	V	C	V	S	F	S	G	G	K	D	S	G	L	M	L	H	L	T	A	E	L	A	R	Q	M	G	K	K	I	C	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	F	I	D	W	E	A	Q	F	S	C	T	I	N	Y	V	Q	S	L	R	E	L	Y	T	D	V	I	E	E	F	Y	W	V	A	L	P	L	T	T	Q	N	S	L	S	Q	Y	Q	P	E	W	Q	C	W	E	P	D	V	E	W	V
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?			?	?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	Q	P	P	Q	D	A	I	T	D	P	D	F	F	C	F	Y	Q	P	G	M	T	F	E	Q	F	V	R	E	F	A	E	W	F	S	Q	K	R	P	A	A	M	M	I	G	I	R	A	D	E	S	Y	N	R	F	V	A	I	A	S
Secondary structure
SS confidence
Disorder																																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	N	K	Q	R	F	A	D	D	K	P	W	T	T	A	A	P	G	G	H	S	W	Y	I	Y	P	I	Y	D	W	K	V	A	D	I	W	T	W	Y	A	N	H	Q	S	L	C	N	P	L	Y	N	L	M	Y	Q	A	G	V	P	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	H	M	R	I	C	E	P	F	G	P	E	Q	R	Q	G	L	W	L	Y	H	V	I	E	P	D	R	W	A	A	M	C	A	R	V	S	G	V	K	S	G	G	I	Y	A	G	H	D	N	H	F	Y	G	H	R	K	I	L	K	P
Secondary structure
SS confidence
Disorder													?																																									?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	H	L	D	W	Q	E	Y	A	L	L	L	L	N	S	M	P	E	K	T	A	E	H	Y	R	N	K	I	A	I	Y	L	H	W	Y	Q	K	K	G	I	E	V	P	Q	T	Q	Q	G	D	I	G	A	K	D	I	P	S	W	R	R
Secondary structure
SS confidence
Disorder		?																																							?	?	?	?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Sequence		I	C	K	V	L	L	N	N	D	Y	W	C	R	A	L	S	F	S	P	T	K	S	K	N	Y	Q	R	Y	N	E	R	I	K	G	K	R	Q	E	W	G	I	L	C	N	N	D
Secondary structure
SS confidence
Disorder																	?		?	?	?	?																								?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2oq2 chain B Region: 13 - 256 Aligned: 209 Modelled: 224 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex Phyre2 PDB 3g59 chain A Region: 6 - 236 Aligned: 170 Modelled: 191 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:fmn adenylyltransferase; PDBTitle: crystal structure of candida glabrata fmn2 adenylyltransferase in complex with atp Phyre2 PDB 2wsi chain A Region: 10 - 236 Aligned: 164 Modelled: 176 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:fad synthetase; PDBTitle: crystal structure of yeast fad synthetase (fad1) in complex2 with fad Phyre2 PDB 2o8v chain A Region: 16 - 236 Aligned: 178 Modelled: 188 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a Phyre2 PDB 1zun chain A Region: 10 - 230 Aligned: 186 Modelled: 202 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae Phyre2 PDB 2goy chain C Region: 8 - 256 Aligned: 209 Modelled: 229 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: C: PDB Molecule:adenosine phosphosulfate reductase; PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps Phyre2 PDB 1sur chain A Region: 16 - 236 Aligned: 178 Modelled: 182 Confidence: 100.0% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: PAPS reductase-like Phyre2 PDB 1zun chain A domain 1 Region: 9 - 230 Aligned: 187 Modelled: 203 Confidence: 100.0% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: PAPS reductase-like Phyre2 PDB 3bl5 chain E Region: 28 - 230 Aligned: 164 Modelled: 179 Confidence: 99.6% Identity: 15% PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis Phyre2 PDB 3a2k chain B Region: 17 - 228 Aligned: 178 Modelled: 179 Confidence: 99.5% Identity: 16% PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna Phyre2 PDB 1wy5 chain A domain 1 Region: 10 - 228 Aligned: 180 Modelled: 186 Confidence: 99.5% Identity: 13% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: PP-loop ATPase Phyre2 PDB 1ni5 chain A domain 1 Region: 19 - 226 Aligned: 168 Modelled: 175 Confidence: 99.5% Identity: 13% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: PP-loop ATPase Phyre2 PDB 1k92 chain A domain 1 Region: 28 - 226 Aligned: 164 Modelled: 168 Confidence: 99.3% Identity: 12% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 2e21 chain A Region: 9 - 228 Aligned: 181 Modelled: 187 Confidence: 99.3% Identity: 12% PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. Phyre2 PDB 1ni5 chain A Region: 19 - 228 Aligned: 169 Modelled: 173 Confidence: 99.3% Identity: 12% PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli Phyre2 PDB 1j20 chain A domain 1 Region: 29 - 226 Aligned: 159 Modelled: 164 Confidence: 99.3% Identity: 13% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 3p52 chain B Region: 10 - 274 Aligned: 209 Modelled: 224 Confidence: 99.2% Identity: 13% PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion Phyre2 PDB 2dpl chain A Region: 11 - 262 Aligned: 185 Modelled: 201 Confidence: 99.2% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 Phyre2 PDB 1vl2 chain A domain 1 Region: 28 - 226 Aligned: 164 Modelled: 180 Confidence: 99.1% Identity: 11% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 2e18 chain B Region: 13 - 229 Aligned: 168 Modelled: 173 Confidence: 99.1% Identity: 14% PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of project ph0182 from pyrococcus horikoshii ot3 Phyre2 PDB 2ghj chain D Region: 215 - 273 Aligned: 47 Modelled: 46 Confidence: 77.1% Identity: 19% PDB header:structural protein Chain: D: PDB Molecule:50s ribosomal protein l20; PDBTitle: crystal structure of folded and partially unfolded forms of2 aquifex aeolicus ribosomal protein l20 Phyre2 PDB 1gyz chain A Region: 217 - 278 Aligned: 50 Modelled: 50 Confidence: 73.2% Identity: 18% Fold: PABP domain-like Superfamily: Ribosomal protein L20 Family: Ribosomal protein L20 Phyre2 PDB 1a0p chain A domain 1 Region: 306 - 370 Aligned: 65 Modelled: 65 Confidence: 59.9% Identity: 25% Fold: SAM domain-like Superfamily: lambda integrase-like, N-terminal domain Family: lambda integrase-like, N-terminal domain Phyre2 1 c2oq2B_ 2 c3g59A_ 3 c2wsiA_ 4 c2o8vA_ 5 c1zunA_ 6 c2goyC_ 7 d1sura_ 8 d1zuna1 9 c3bl5E_ 10 c3a2kB_ 11 d1wy5a1 12 d1ni5a1 13 d1k92a1 14 c2e21A_ 15 c1ni5A_ 16 d1j20a1 17 c3p52B_ 18 c2dplA_ 19 d1vl2a1 20 c2e18B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 c2ghjD_ 57 58 d1gyza_ 59 60 61 62 63 64 65 66 67 d1a0pa1 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2oq2B_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 2 c3g59A_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:fmn adenylyltransferase; PDBTitle: crystal structure of candida glabrata fmn2 adenylyltransferase in complex with atp 3 c2wsiA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:fad synthetase; PDBTitle: crystal structure of yeast fad synthetase (fad1) in complex2 with fad 4 c2o8vA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a 5 c1zunA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 6 c2goyC_ 100.0 17 PDB header:oxidoreductase Chain: C: PDB Molecule:adenosine phosphosulfate reductase; PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps 7 d1sura_ 100.0 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 8 d1zuna1 100.0 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 9 c3bl5E_ 99.6 15 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 10 c3a2kB_ 99.5 16 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 11 d1wy5a1 99.5 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 12 d1ni5a1 99.5 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 13 d1k92a1 99.3 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 14 c2e21A_ 99.3 12 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 15 c1ni5A_ 99.3 12 PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli 16 d1j20a1 99.3 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 17 c3p52B_ 99.2 13 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion 18 c2dplA_ 99.2 15 PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 19 d1vl2a1 99.1 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 20 c2e18B_ 99.1 14 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of project ph0182 from pyrococcus horikoshii ot3 21 d1gpma1 not modelled 99.1 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 22 c1kh2D_ not modelled 99.0 12 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 23 d2pg3a1 not modelled 99.0 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 24 d1xnga1 not modelled 98.9 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 25 c2nz2A_ not modelled 98.9 13 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline 26 c1k97A_ not modelled 98.9 12 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 27 c1vl2C_ not modelled 98.9 13 PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution 28 d2c5sa1 not modelled 98.8 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 29 c3fiuD_ not modelled 98.8 14 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 30 c3tqiB_ not modelled 98.8 14 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 31 c2ywcC_ not modelled 98.6 13 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 32 c1gpmD_ not modelled 98.6 11 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 33 c2derA_ not modelled 98.5 13 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 34 c3uowB_ not modelled 98.5 16 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 35 c2vxoB_ not modelled 98.4 13 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 36 c2hmaA_ not modelled 98.4 14 PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae 37 d1kqpa_ not modelled 98.2 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 38 c2c5sA_ not modelled 98.2 16 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 39 c3k32D_ not modelled 98.1 23 PDB header:transferase Chain: D: PDB Molecule:uncharacterized protein mj0690; PDBTitle: the crystal structure of predicted subunit of trna2 methyltransferase from methanocaldococcus jannaschii dsm 40 c3q4gA_ not modelled 98.1 13 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 41 c3dpiA_ not modelled 98.0 14 PDB header:ligase Chain: A: PDB Molecule:nad+ synthetase; PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei 42 d1vbka1 not modelled 98.0 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 43 d1ru8a_ not modelled 97.9 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 44 d1wxia1 not modelled 97.7 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 45 c3n05B_ not modelled 97.2 12 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis 46 d2d13a1 not modelled 96.9 41 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 47 d1q15a1 not modelled 95.2 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 48 d1jgta1 not modelled 95.1 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 49 c1ct9D_ not modelled 94.3 17 PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli 50 d1ct9a1 not modelled 93.4 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 51 c1q15A_ not modelled 93.0 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase 52 c3dlaD_ not modelled 93.0 21 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 53 c1m1zB_ not modelled 92.8 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 54 c3ilvA_ not modelled 84.6 21 PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii 55 c2pfsA_ not modelled 83.4 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 56 c2ghjD_ 77.1 19 PDB header:structural protein Chain: D: PDB Molecule:50s ribosomal protein l20; PDBTitle: crystal structure of folded and partially unfolded forms of2 aquifex aeolicus ribosomal protein l20 57 c1wozA_ not modelled 75.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long conserved hypothetical protein (st1454); PDBTitle: crystal structure of uncharacterized protein st1454 from sulfolobus2 tokodaii 58 d1gyza_ 73.2 18 Fold:PABP domain-like Superfamily:Ribosomal protein L20 Family:Ribosomal protein L20 59 d2zjrn1 not modelled 70.8 19 Fold:PABP domain-like Superfamily:Ribosomal protein L20 Family:Ribosomal protein L20 60 c3bs7A_ not modelled 69.3 26 PDB header:signaling protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle 61 d2j01u1 not modelled 66.9 21 Fold:PABP domain-like Superfamily:Ribosomal protein L20 Family:Ribosomal protein L20 62 c2ftcL_ not modelled 66.1 18 PDB header:ribosome Chain: L: PDB Molecule:mrpl20 protein; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 63 d1tq8a_ not modelled 65.6 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 64 c2nt8A_ not modelled 64.6 15 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase; PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri 65 c2ah6B_ not modelled 63.5 19 PDB header:transferase Chain: B: PDB Molecule:bh1595, unknown conserved protein; PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution 66 c3bs5A_ not modelled 61.2 26 PDB header:signaling protein/membrane protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of hcnk2-sam/dhyp-sam complex 67 d1a0pa1 59.9 25 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 68 c3bq7A_ not modelled 57.4 11 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase delta; PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g) 69 c3ci1A_ not modelled 55.4 17 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase pduo-like protein; PDBTitle: structure of the pduo-type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri complexed3 with four-coordinate cob(ii)alamin and atp 70 c1nogA_ not modelled 53.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein ta0546; PDBTitle: crystal structure of conserved protein 0546 from thermoplasma2 acidophilum 71 d1noga_ not modelled 53.9 17 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 72 d1rtya_ not modelled 53.5 18 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 73 c2zhzC_ not modelled 53.4 19 PDB header:transferase Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative; PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis 74 c1vbkA_ not modelled 52.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 75 d2z3va1 not modelled 52.8 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 76 c3ke4B_ not modelled 52.3 18 PDB header:transferase Chain: B: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of a pduo-type atp:cob(i)alamin adenosyltransferase2 from bacillus cereus 77 c2idxA_ not modelled 51.2 18 PDB header:transferase Chain: A: PDB Molecule:cob(i)yrinic acid a,c-diamide PDBTitle: structure of human atp:cobalamin adenosyltransferase bound2 to atp. 78 c2g2dA_ not modelled 51.1 18 PDB header:transferase Chain: A: PDB Molecule:atp:cobalamin adenosyltransferase; PDBTitle: crystal structure of a putative pduo-type atp:cobalamin2 adenosyltransferase from mycobacterium tuberculosis 79 d1rtyb_ not modelled 50.8 18 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 80 c1y89B_ not modelled 49.6 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein 81 d1pk1c1 not modelled 47.9 25 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 82 c1wvtA_ not modelled 41.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st2180; PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii 83 c1pk1B_ not modelled 41.5 12 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 84 c3bboS_ not modelled 41.4 11 PDB header:ribosome Chain: S: PDB Molecule:ribosomal protein l20; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 85 c2e7pC_ not modelled 38.0 18 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 86 c2j0eA_ not modelled 35.3 11 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei 87 c2jrmA_ not modelled 32.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ribosome modulation factor; PDBTitle: solution nmr structure of ribosome modulation factor vp1593 from2 vibrio parahaemolyticus. northeast structural genomics target vpr55 88 c1pk1A_ not modelled 30.7 28 PDB header:transcription repression Chain: A: PDB Molecule:polyhomeotic-proximal chromatin protein; PDBTitle: hetero sam domain structure of ph and scm. 89 d1wwva1 not modelled 30.7 20 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 90 c1tx2A_ not modelled 30.6 13 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 91 d1tx2a_ not modelled 30.6 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 92 d2gyco1 not modelled 29.3 12 Fold:PABP domain-like Superfamily:Ribosomal protein L20 Family:Ribosomal protein L20 93 c3mt0A_ not modelled 27.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 94 c1wy1B_ not modelled 27.5 13 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein ph0671; PDBTitle: crystal structure of the ph0671 protein from pyrococcus horikoshii ot3 95 c1v85A_ not modelled 27.5 9 PDB header:apoptosis Chain: A: PDB Molecule:similar to ring finger protein 36; PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator 96 d1kw4a_ not modelled 27.2 28 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 97 c1pbtA_ not modelled 26.9 19 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima 98 c3oc6A_ not modelled 26.8 14 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form 99 c3loqA_ not modelled 26.7 10 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 100 c3lhiA_ not modelled 26.2 13 PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution 101 d1vl1a_ not modelled 25.8 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 102 c3lwdA_ not modelled 24.9 18 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution 103 c2dkzA_ not modelled 24.7 0 PDB header:signaling protein Chain: A: PDB Molecule:hypothetical protein loc64762; PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762 104 c3olqA_ not modelled 24.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 105 c3bkhA_ not modelled 24.0 17 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 106 c2gleA_ not modelled 23.4 9 PDB header:protein binding Chain: A: PDB Molecule:neurabin-1; PDBTitle: solution structure of neurabin sam domain 107 d1luaa2 not modelled 23.3 16 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Methylene-tetrahydromethanopterin dehydrogenase 108 d1fsfa_ not modelled 22.9 14 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 109 d1sv0a_ not modelled 22.2 14 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Pointed domain 110 c2d1fA_ not modelled 21.4 10 PDB header:lyase Chain: A: PDB Molecule:threonine synthase; PDBTitle: structure of mycobacterium tuberculosis threonine synthase 111 c2jacA_ not modelled 20.9 11 PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: glutaredoxin grx1p c30s mutant from yeast 112 c3hn6D_ not modelled 20.5 14 PDB header:isomerase Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0