Email l.a.kelley@imperial.ac.uk Description P36553 Date Thu Jan 5 11:53:14 GMT 2012 Unique Job ID fccf22e93cca2329

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2aexA_ 100.0 48 PDB header:oxidoreductase Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial; PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria 2 d1tkla_ 100.0 47 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 3 d1vjua_ 100.0 66 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 4 d1txna_ 100.0 44 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 5 c3lm3A_ 47.3 42 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution 6 d1ci4a_ 35.3 18 Fold:SAM domain-like Superfamily:Barrier-to-autointegration factor, BAF Family:Barrier-to-autointegration factor, BAF 7 d1kkoa2 28.7 40 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 8 d1kcza2 28.3 50 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 9 c3fubA_ 27.9 27 PDB header:hormone Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: crystal structure of gdnf-gfralpha1 complex 10 c2v5eA_ 27.3 27 PDB header:receptor/glycoprotein complex Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: the structure of the gdnf\:coreceptor complex\: insights2 into ret signalling and heparin binding. 11 d1y7pa2 26.9 26 Fold:Ferredoxin-like Superfamily:ACT-like Family:AF1403 N-terminal domain-like 12 c2r7tA_ 21.7 38 PDB header:transferase/rna Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of rotavirus sa11 vp1/rna (ugugaacc)2 complex 13 c2r39A_ 21.1 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 14 c1kkoB_ 18.5 40 PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase 15 d1j2ga1 16.7 15 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 16 d1bdfa1 16.1 33 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 17 d1t9ka_ 16.0 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 18 d1gg4a1 15.7 21 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 19 c2pbyB_ 14.9 71 PDB header:hydrolase Chain: B: PDB Molecule:glutaminase; PDBTitle: probable glutaminase from geobacillus kaustophilus hta426 20 d1yuaa1 13.1 47 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 21 c3ccjU_ not modelled 13.0 29 PDB header:ribosome Chain: U: PDB Molecule:50s ribosomal protein l24e; PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u 22 d1vb5a_ not modelled 12.8 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 23 c2yvkA_ not modelled 12.7 16 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 24 c3llxA_ not modelled 12.5 12 PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution 25 d1vqou1 not modelled 12.3 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Ribosomal protein L24e 26 d1auna_ not modelled 12.0 38 Fold:Osmotin, thaumatin-like protein Superfamily:Osmotin, thaumatin-like protein Family:Osmotin, thaumatin-like protein 27 d2yzca1 not modelled 11.7 26 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 28 c2zkru_ not modelled 11.6 43 PDB header:ribosomal protein/rna Chain: U: PDB Molecule:rna expansion segment es41; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 29 d1wmxb_ not modelled 11.6 35 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 30 c1w2wJ_ not modelled 11.5 22 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 31 c3uo9B_ not modelled 11.3 14 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 32 c2d35A_ not modelled 11.1 60 PDB header:cell cycle Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure of cell division reactivation factor,2 ceda 33 c1yuaA_ not modelled 10.9 47 PDB header:dna binding protein Chain: A: PDB Molecule:topoisomerase i; PDBTitle: c-terminal domain of escherichia coli topoisomerase i 34 c2bn8A_ not modelled 10.9 60 PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda 35 c2yk5A_ not modelled 10.7 13 PDB header:transferase Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-2,3- PDBTitle: structure of neisseria los-specific sialyltransferase (nst),2 in complex with cmp. 36 c3n2bD_ not modelled 10.5 17 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 37 d2fkla1 not modelled 10.0 33 Fold:Dodecin subunit-like Superfamily:Amyloid beta a4 protein copper binding domain (domain 2) Family:Amyloid beta a4 protein copper binding domain (domain 2) 38 c3ecsD_ not modelled 9.9 24 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 39 c4a1eT_ not modelled 9.6 29 PDB header:ribosome Chain: T: PDB Molecule:rpl24; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 40 d1ccwb_ not modelled 9.5 23 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Glutamate mutase, large subunit 41 c1u2zC_ not modelled 9.4 14 PDB header:transferase Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 PDBTitle: crystal structure of histone k79 methyltransferase dot1p2 from yeast 42 c2ebsB_ not modelled 9.2 21 PDB header:hydrolase Chain: B: PDB Molecule:oligoxyloglucan reducing end-specific PDBTitle: crystal structure anaalysis of oligoxyloglucan reducing-end-2 specific cellobiohydrolase (oxg-rcbh) d465n mutant3 complexed with a xyloglucan heptasaccharide 43 c3f42A_ not modelled 9.2 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 44 c3izcZ_ not modelled 9.1 29 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 45 d1e88a3 not modelled 9.1 38 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 46 d2piaa2 not modelled 9.1 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 47 d1uc8a1 not modelled 8.8 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 48 d1tvca2 not modelled 8.8 22 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 49 d1u5la_ not modelled 8.6 10 Fold:Prion-like Superfamily:Prion-like Family:Prion-like 50 d1tz9a_ not modelled 8.3 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 51 d1tzpa_ not modelled 8.2 35 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:MepA-like 52 d2a0ua1 not modelled 8.1 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 53 d1gff1_ not modelled 7.9 67 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 54 d1qfja2 not modelled 7.9 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 55 c3iz5Z_ not modelled 7.7 29 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 d1pzra_ not modelled 7.7 86 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 57 d1ulva3 not modelled 7.7 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:CBD9-like Family:Glucodextranase, domain C 58 d2ibaa1 not modelled 7.5 16 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 59 d3be7a1 not modelled 7.4 27 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Zn-dependent arginine carboxypeptidase-like 60 c3cxjB_ not modelled 7.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 61 c2jv4A_ not modelled 7.4 25 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis/trans isomerase; PDBTitle: structure characterisation of pina ww domain and comparison2 with other group iv ww domains, pin1 and ess1 62 c2xdyA_ not modelled 7.4 20 PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid domain 63 d2d6fc2 not modelled 7.4 44 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 64 d2bi0a1 not modelled 7.3 46 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 65 d1edta_ not modelled 7.3 30 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 66 d1ny722 not modelled 7.3 27 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 67 d1pcva_ not modelled 7.3 38 Fold:Osmotin, thaumatin-like protein Superfamily:Osmotin, thaumatin-like protein Family:Osmotin, thaumatin-like protein 68 d1ddga2 not modelled 7.2 25 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 69 c2rhfA_ not modelled 7.2 13 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 70 c3n8bB_ not modelled 7.1 14 PDB header:nucleic acid binding protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 71 c1i7wB_ not modelled 7.1 50 PDB header:cell adhesion Chain: B: PDB Molecule:epithelial-cadherin; PDBTitle: beta-catenin/phosphorylated e-cadherin complex 72 d1e8ga1 not modelled 7.0 10 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like 73 c3nzpA_ not modelled 7.0 22 PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 74 c3nm7C_ not modelled 7.0 14 PDB header:nucleic acid binding protein Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 75 d1pgl22 not modelled 6.9 36 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 76 c2j3zA_ not modelled 6.9 18 PDB header:toxin Chain: A: PDB Molecule:c2 toxin component i; PDBTitle: crystal structure of the enzymatic component c2-i of the2 c2-toxin from clostridium botulinum at ph 6.1 77 c3nzqB_ not modelled 6.8 41 PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600 78 c3nm7D_ not modelled 6.7 14 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 79 c3n8bA_ not modelled 6.7 14 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 80 d1ehsa_ not modelled 6.6 19 Fold:Toxic hairpin Superfamily:Heat-stable enterotoxin B Family:Heat-stable enterotoxin B 81 c3ik2A_ not modelled 6.5 6 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase a; PDBTitle: crystal structure of a glycoside hydrolase family 44 endoglucanase2 produced by clostridium acetobutylium atcc 824 82 c3aagA_ not modelled 6.3 44 PDB header:transferase Chain: A: PDB Molecule:general glycosylation pathway protein; PDBTitle: crystal structure of c. jejuni pglb c-terminal domain 83 c1tvcA_ not modelled 6.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) 84 c2j10B_ not modelled 6.2 58 PDB header:transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 85 c2ahnA_ not modelled 6.2 38 PDB header:allergen Chain: A: PDB Molecule:thaumatin-like protein; PDBTitle: high resolution structure of a cherry allergen pru av 2 86 d1qt1a_ not modelled 6.2 19 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 87 c2j10D_ not modelled 6.1 58 PDB header:transcription Chain: D: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 88 c2j10A_ not modelled 6.1 58 PDB header:transcription Chain: A: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 89 c3a11D_ not modelled 6.1 20 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 90 c3ic8D_ not modelled 6.0 19 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein; PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a 91 d1rqwa_ not modelled 5.9 38 Fold:Osmotin, thaumatin-like protein Superfamily:Osmotin, thaumatin-like protein Family:Osmotin, thaumatin-like protein 92 c2k5dA_ not modelled 5.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sag0934; PDBTitle: solution nmr structure of sag0934 from streptococcus2 agalactiae. northeast structural genomics target sar32[1-3 108]. 93 d2aama1 not modelled 5.8 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:TM1410-like 94 c2aamA_ not modelled 5.8 12 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein tm1410; PDBTitle: crystal structure of a putative glycosidase (tm1410) from thermotoga2 maritima at 2.20 a resolution 95 d1ry7a_ not modelled 5.8 16 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 96 d1qqha_ not modelled 5.8 8 Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain 97 c3mt1B_ not modelled 5.7 15 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 98 c1s1iS_ not modelled 5.6 29 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l24-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 99 d1t3la1 not modelled 5.6 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain