Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	K	L	T	L	L	L	L	A	I	L	V	W	L	Q	Y	S	L	W	F	G	K	N	G	I	H	D	Y	T	R	V	N	D	D	V	A	A	Q	Q	A	T	N	A	K	L	K	A	R	N	D	Q	L	F	A	E	I	D	D	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Sequence		N	G	G	Q	E	A	L	E	E	R	A	R	N	E	L	S	M	T	R	P	G	E	T	F	Y	R	L	V	P	D	A	S	K	R	A	Q	S	A	G	Q	N	N	R
Secondary structure
SS confidence
Disorder		?	?													?															?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2xzr chain A Region: 23 - 61 Aligned: 39 Modelled: 39 Confidence: 80.8% Identity: 5% PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors Phyre2 PDB 1ci6 chain B Region: 27 - 62 Aligned: 36 Modelled: 36 Confidence: 78.6% Identity: 22% PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer Phyre2 PDB 2yy0 chain D Region: 32 - 59 Aligned: 28 Modelled: 28 Confidence: 77.5% Identity: 14% PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens Phyre2 PDB 2e43 chain A Region: 28 - 62 Aligned: 35 Modelled: 35 Confidence: 74.6% Identity: 23% PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment Phyre2 PDB 1fos chain F Region: 28 - 61 Aligned: 34 Modelled: 34 Confidence: 72.5% Identity: 21% PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes Phyre2 PDB 1ci6 chain A Region: 31 - 73 Aligned: 43 Modelled: 43 Confidence: 72.3% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer Phyre2 PDB 2xdj chain F Region: 28 - 61 Aligned: 34 Modelled: 34 Confidence: 71.8% Identity: 9% PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf Phyre2 PDB 1fos chain E Region: 31 - 70 Aligned: 40 Modelled: 40 Confidence: 69.8% Identity: 28% PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes Phyre2 PDB 1u2u chain A Region: 35 - 60 Aligned: 26 Modelled: 26 Confidence: 69.7% Identity: 38% PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper Phyre2 PDB 3mud chain A Region: 34 - 77 Aligned: 41 Modelled: 44 Confidence: 69.7% Identity: 15% PDB header:contractile protein Chain: A: PDB Molecule:dna repair protein xrcc4, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle Phyre2 PDB 1t2k chain D Region: 28 - 61 Aligned: 34 Modelled: 34 Confidence: 67.5% Identity: 15% PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna Phyre2 PDB 1gk7 chain A Region: 22 - 60 Aligned: 39 Modelled: 39 Confidence: 67.4% Identity: 28% PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) Phyre2 PDB 1ce0 chain B Region: 34 - 62 Aligned: 29 Modelled: 29 Confidence: 64.9% Identity: 14% PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model Phyre2 PDB 3m9b chain K Region: 28 - 61 Aligned: 34 Modelled: 34 Confidence: 63.0% Identity: 18% PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa Phyre2 PDB 1dh3 chain A Region: 31 - 62 Aligned: 32 Modelled: 32 Confidence: 62.3% Identity: 22% PDB header:transcription/dna Chain: A: PDB Molecule:transcription factor creb; PDBTitle: crystal structure of a creb bzip-cre complex reveals the2 basis for creb faimly selective dimerization and dna3 binding Phyre2 PDB 1cz7 chain C Region: 32 - 75 Aligned: 43 Modelled: 44 Confidence: 60.6% Identity: 23% PDB header:contractile protein Chain: C: PDB Molecule:microtubule motor protein ncd; PDBTitle: the crystal structure of a minus-end directed microtubule2 motor protein ncd reveals variable dimer conformations Phyre2 PDB 1nkp chain A Region: 29 - 62 Aligned: 34 Modelled: 34 Confidence: 58.6% Identity: 21% Fold: HLH-like Superfamily: HLH, helix-loop-helix DNA-binding domain Family: HLH, helix-loop-helix DNA-binding domain Phyre2 PDB 1ij3 chain C Region: 36 - 61 Aligned: 26 Modelled: 26 Confidence: 57.1% Identity: 15% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position Phyre2 PDB 1ij3 chain B Region: 36 - 61 Aligned: 26 Modelled: 26 Confidence: 57.1% Identity: 15% PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position Phyre2 PDB 1ij2 chain C Region: 36 - 61 Aligned: 26 Modelled: 26 Confidence: 56.9% Identity: 15% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position Phyre2 1 c2xzrA_ 2 c1ci6B_ 3 c2yy0D_ 4 c2e43A_ 5 c1fosF_ 6 c1ci6A_ 7 c2xdjF_ 8 c1fosE_ 9 c1u2uA_ 10 c3mudA_ 11 c1t2kD_ 12 c1gk7A_ 13 c1ce0B_ 14 c3m9bK_ 15 c1dh3A_ 16 c1cz7C_ 17 d1nkpa_ 18 c1ij3C_ 19 c1ij3B_ 20 c1ij2C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2xzrA_ 80.8 5 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 2 c1ci6B_ 78.6 22 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 3 c2yy0D_ 77.5 14 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 4 c2e43A_ 74.6 23 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 5 c1fosF_ 72.5 21 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 6 c1ci6A_ 72.3 16 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 7 c2xdjF_ 71.8 9 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 8 c1fosE_ 69.8 28 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 9 c1u2uA_ 69.7 38 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 10 c3mudA_ 69.7 15 PDB header:contractile protein Chain: A: PDB Molecule:dna repair protein xrcc4, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 11 c1t2kD_ 67.5 15 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 12 c1gk7A_ 67.4 28 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) 13 c1ce0B_ 64.9 14 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 14 c3m9bK_ 63.0 18 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 15 c1dh3A_ 62.3 22 PDB header:transcription/dna Chain: A: PDB Molecule:transcription factor creb; PDBTitle: crystal structure of a creb bzip-cre complex reveals the2 basis for creb faimly selective dimerization and dna3 binding 16 c1cz7C_ 60.6 23 PDB header:contractile protein Chain: C: PDB Molecule:microtubule motor protein ncd; PDBTitle: the crystal structure of a minus-end directed microtubule2 motor protein ncd reveals variable dimer conformations 17 d1nkpa_ 58.6 21 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 18 c1ij3C_ 57.1 15 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 19 c1ij3B_ 57.1 15 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 20 c1ij2C_ 56.9 15 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 21 c1rb1B_ not modelled 56.6 15 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 22 c1swiA_ not modelled 56.6 15 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 23 c1rb6C_ not modelled 56.6 15 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 24 c3k7zB_ not modelled 56.6 15 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 25 c1rb1A_ not modelled 56.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 26 c3k7zA_ not modelled 56.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 27 c1gd2G_ not modelled 56.0 18 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 28 d1ivsa1 not modelled 55.8 17 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 29 c1fmhA_ not modelled 55.5 35 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 30 d1nkpb_ not modelled 55.1 18 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 31 c2gd7B_ not modelled 54.5 25 PDB header:transcription Chain: B: PDB Molecule:hexim1 protein; PDBTitle: the structure of the cyclin t-binding domain of hexim12 reveals the molecular basis for regulation of3 transcription elongation 32 c1ij2B_ not modelled 54.0 15 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 33 c2w6bA_ not modelled 53.9 20 PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7; PDBTitle: crystal structure of the trimeric beta-pix coiled-coil2 domain 34 c2o7hF_ not modelled 53.0 15 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 35 d2azeb1 not modelled 52.4 11 Fold:E2F-DP heterodimerization region Superfamily:E2F-DP heterodimerization region Family:E2F dimerization segment 36 c2wt7B_ not modelled 52.1 14 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 37 c1wpaA_ not modelled 52.1 12 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 38 c2j5uB_ not modelled 51.9 18 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 39 c2wvrB_ not modelled 51.7 15 PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex 40 d1r05a_ not modelled 50.8 24 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 41 c1ztaA_ not modelled 49.8 20 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 42 c2oqqB_ not modelled 49.2 14 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 43 c2jeeA_ not modelled 48.8 14 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 44 c3n4xB_ not modelled 46.2 16 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 45 c2wg6L_ not modelled 45.6 17 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 46 c3a5tB_ not modelled 45.3 23 PDB header:transcription regulator/dna Chain: B: PDB Molecule:transcription factor mafg; PDBTitle: crystal structure of mafg-dna complex 47 c1wt6B_ not modelled 44.6 21 PDB header:transferase Chain: B: PDB Molecule:myotonin-protein kinase; PDBTitle: coiled-coil domain of dmpk 48 c1xawA_ not modelled 44.3 12 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin 49 c3mkxC_ not modelled 41.2 14 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 50 d1an2a_ not modelled 40.1 18 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 51 c3kinB_ not modelled 39.4 16 PDB header:motor protein Chain: B: PDB Molecule:kinesin heavy chain; PDBTitle: kinesin (dimeric) from rattus norvegicus 52 c3q4fG_ not modelled 39.0 32 PDB header:dna binding protein/protein binding Chain: G: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of xrcc4/xlf-cernunnos complex 53 c3oa7A_ not modelled 38.5 16 PDB header:structural protein Chain: A: PDB Molecule:head morphogenesis protein, chaotic nuclear migration PDBTitle: structure of the c-terminal domain of cnm67, a core component of the2 spindle pole body of saccharomyces cerevisiae 54 c2w6aB_ not modelled 32.8 22 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain 55 c1junB_ not modelled 32.6 21 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 56 c3he5A_ not modelled 32.3 24 PDB header:de novo protein Chain: A: PDB Molecule:synzip1; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1 57 c2wukD_ not modelled 32.2 15 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 58 c2zxxA_ not modelled 31.8 15 PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex 59 d1nlwe_ not modelled 31.8 17 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 60 c1dipA_ not modelled 31.5 15 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 61 c2x7aB_ not modelled 29.7 12 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 62 d1uklc_ not modelled 29.4 25 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 63 d1fxkc_ not modelled 29.2 12 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 64 c1x4qA_ not modelled 27.3 25 PDB header:rna binding protein Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3; PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3) 65 c1t6fA_ not modelled 26.9 21 PDB header:cell cycle Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin 66 c2a93B_ not modelled 26.8 21 PDB header:leucine zippers Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper; PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures 67 c2v4hA_ not modelled 26.6 17 PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex 68 d2e74h1 not modelled 25.7 29 Fold:Single transmembrane helix Superfamily:PetN subunit of the cytochrome b6f complex Family:PetN subunit of the cytochrome b6f complex 69 c2e74H_ not modelled 25.0 29 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 70 c2efrB_ not modelled 24.2 18 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 71 c3tlxA_ not modelled 24.0 19 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 2; PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum 72 c2e75H_ not modelled 23.6 29 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 73 c2e76H_ not modelled 23.6 29 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 74 d2oa5a1 not modelled 23.5 18 Fold:BLRF2-like Superfamily:BLRF2-like Family:BLRF2-like 75 c1deqO_ not modelled 23.3 9 PDB header: PDB COMPND: 76 d1nlwa_ not modelled 23.1 10 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 77 c3he4F_ not modelled 22.8 24 PDB header:de novo protein Chain: F: PDB Molecule:synzip5; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6 78 c3hnwB_ not modelled 22.5 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 79 c3ol1A_ not modelled 22.4 8 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 80 c3hizB_ not modelled 22.0 10 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 81 c1jccC_ not modelled 21.9 13 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 82 c1vf5H_ not modelled 21.6 29 PDB header:photosynthesis Chain: H: PDB Molecule:protein pet n; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 83 c1vf5U_ not modelled 21.6 29 PDB header:photosynthesis Chain: U: PDB Molecule:protein pet n; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 84 c1ihqA_ not modelled 21.3 23 PDB header:de novo protein Chain: A: PDB Molecule:chimeric peptide glytm1bzip: tropomyosin alpha PDBTitle: glytm1bzip: a chimeric peptide model of the n-terminus of a2 rat short alpha tropomyosin with the n-terminus encoded by3 exon 1b 85 c1l8dB_ not modelled 20.7 24 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 86 c2l5gA_ not modelled 20.7 13 PDB header:transcription regulator Chain: A: PDB Molecule:g protein pathway suppressor 2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 87 c1hf9B_ not modelled 20.4 9 PDB header:atpase inhibitor Chain: B: PDB Molecule:atpase inhibitor (mitochondrial); PDBTitle: c-terminal coiled-coil domain from bovine if1 88 c3qh9A_ not modelled 19.2 18 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 89 c1ik9B_ not modelled 18.2 15 PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 90 c2zt9H_ not modelled 17.5 29 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8; PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120 91 c1p9iA_ not modelled 17.1 33 PDB header:unknown function Chain: A: PDB Molecule:cortexillin i/gcn4 hybrid peptide; PDBTitle: coiled-coil x-ray structure at 1.17 a resolution 92 c3he4A_ not modelled 16.9 26 PDB header:de novo protein Chain: A: PDB Molecule:synzip6; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6 93 c1u2uB_ not modelled 16.9 33 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 94 c2d2cU_ not modelled 16.8 29 PDB header:photosynthesis Chain: U: PDB Molecule:cytochrome b6-f complex subunit viii; PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus 95 c2d2cH_ not modelled 16.8 29 PDB header:photosynthesis Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii; PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus 96 c1u0iA_ not modelled 16.7 25 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 97 c2zvnF_ not modelled 16.4 17 PDB header:signaling protein/transcription Chain: F: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cozi domain incomplex with diubiquitin in p2121212 space group 98 c3a7pB_ not modelled 15.8 9 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 99 c2ke4A_ not modelled 14.9 10 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0