Email l.a.kelley@imperial.ac.uk Description P16919 Date Wed Jan 25 15:20:40 GMT 2012 Unique Job ID f54722af1d87bd4f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2oy7A_ 96.5 15 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 2 d1rypi_ 46.2 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 3 d1x3za1 46.0 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 4 d1irua_ 43.0 16 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 5 c3nqhA_ 42.9 17 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase; PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution 6 c1j5qB_ 37.5 25 PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. 7 c1n7dA_ 36.6 10 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor 8 d1j2pa_ 33.2 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 9 c1m4xC_ 30.7 29 PDB header:virus Chain: C: PDB Molecule:pbcv-1 virus capsid; PDBTitle: pbcv-1 virus capsid, quasi-atomic model 10 c3eswA_ 30.5 18 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 11 c2ivzD_ 30.3 11 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 12 d2f4ma1 28.5 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 13 d1wc9a_ 27.0 22 Fold:Ligand-binding domain in the NO signalling and Golgi transport Superfamily:Ligand-binding domain in the NO signalling and Golgi transport Family:TRAPP components 14 c3e5zA_ 26.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 15 d1m3ya2 26.1 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 16 c3mswA_ 24.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution 17 c2cfhA_ 23.9 25 PDB header:transport Chain: A: PDB Molecule:trafficking protein particle complex subunit 3; PDBTitle: structure of the bet3-tpc6b core of trapp 18 c1rz2A_ 22.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein ba4783; PDBTitle: 1.6a crystal structure of the protein ba4783/q81l49 (similar to2 sortase b) from bacillus anthracis. 19 c3ifzA_ 22.7 25 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 20 c2x12A_ 22.4 27 PDB header:cell adhesion Chain: A: PDB Molecule:fimbriae-associated protein fap1; PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae 21 c3rwxA_ not modelled 22.2 18 PDB header:transport protein Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein; PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution 22 c2zcyM_ not modelled 20.2 16 PDB header:hydrolase Chain: M: PDB Molecule:proteasome component pre4; PDBTitle: yeast 20s proteasome:syringolin a-complex 23 d1ryp2_ not modelled 20.2 16 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 24 c1bqfA_ not modelled 20.1 70 PDB header:hormone/growth factor Chain: A: PDB Molecule:protein (growth-blocking peptide); PDBTitle: growth-blocking peptide (gbp) from pseudaletia separata 25 d1rype_ not modelled 19.9 17 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 26 c2kijA_ not modelled 19.1 23 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 27 c2oryA_ not modelled 18.3 16 PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of m37 lipase 28 c3bmxB_ not modelled 17.8 38 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis 29 d1ri9a_ not modelled 17.3 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 30 c1ri9A_ not modelled 17.3 24 PDB header:signaling protein Chain: A: PDB Molecule:fyn-binding protein; PDBTitle: structure of a helically extended sh3 domain of the t cell2 adapter protein adap 31 d1pk6c_ not modelled 17.0 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 32 d1qwza_ not modelled 16.4 18 Fold:Sortase Superfamily:Sortase Family:Sortase 33 c2ka3C_ not modelled 15.7 36 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 34 d1rh1a1 not modelled 15.4 20 Fold:Cloacin translocation domain Superfamily:Cloacin translocation domain Family:Cloacin translocation domain 35 c3nzwH_ not modelled 15.3 20 PDB header:hydrolase/hydrolase inhibitor Chain: H: PDB Molecule:proteasome component pup1; PDBTitle: crystal structure of the yeast 20s proteasome in complex with 2b 36 d2oqza1 not modelled 15.1 15 Fold:Sortase Superfamily:Sortase Family:Sortase 37 d1bcga_ not modelled 15.1 35 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 38 c2gacA_ not modelled 15.1 16 PDB header:hydrolase Chain: A: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 39 c3h4pB_ not modelled 15.0 17 PDB header:hydrolase Chain: B: PDB Molecule:proteasome subunit alpha; PDBTitle: proteasome 20s core particle from methanocaldococcus2 jannaschii 40 d1bcoa1 not modelled 14.8 17 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 41 c3lk6A_ not modelled 14.7 38 PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis 42 d1pk6b_ not modelled 14.7 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 43 d1iruc_ not modelled 14.6 21 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 44 c3ilwA_ not modelled 14.4 45 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 45 d1xata_ not modelled 14.2 23 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 46 c2kkyA_ not modelled 14.1 53 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ecs2156; PDBTitle: solution structure of c-terminal domain of oxidized nleg2-3 (residue2 90-191) from pathogenic e. coli o157:h7. northeast structural3 genomics consortium and midwest center for structural genomics target4 et109a 47 d1rypc_ not modelled 13.8 22 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 48 c3ghpA_ not modelled 13.7 36 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: structure of the second type ii cohesin module from the2 adaptor scaa scaffoldin of acetivibrio cellulolyticus3 (including long c-terminal linker) 49 c1t3dB_ not modelled 13.7 32 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 50 d1c3ha_ not modelled 13.5 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 51 c2novD_ not modelled 13.4 19 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 52 c2b59A_ not modelled 13.2 24 PDB header:hydrolase/structural protein Chain: A: PDB Molecule:cog1196: chromosome segregation atpases; PDBTitle: the type ii cohesin dockerin complex 53 d1rypj_ not modelled 13.0 15 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 54 c3vh0C_ not modelled 12.9 9 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 55 c1zvuA_ not modelled 12.9 24 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 56 c2gtjA_ not modelled 12.7 18 PDB header:signaling protein Chain: A: PDB Molecule:fyn-binding protein; PDBTitle: reduced form of adap hsh3-n-domain 57 d1tyja1 not modelled 12.6 27 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 58 d1zv9a1 not modelled 12.6 36 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 59 d1irug_ not modelled 12.5 12 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 60 c2xetB_ not modelled 12.4 5 PDB header:transport protein Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly 61 d1xaka_ not modelled 12.4 44 Fold:Immunoglobulin-like beta-sandwich Superfamily:Accessory protein X4 (ORF8, ORF7a) Family:Accessory protein X4 (ORF8, ORF7a) 62 c2w8bB_ not modelled 12.4 11 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 63 c2e5pA_ not modelled 12.3 23 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein) 64 c3qx3B_ not modelled 12.2 50 PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide 65 d1ng5a_ not modelled 12.1 18 Fold:Sortase Superfamily:Sortase Family:Sortase 66 d1m7xa2 not modelled 12.0 13 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 67 c2wl2B_ not modelled 11.8 22 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 68 c2iu9C_ not modelled 11.7 23 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 69 d1ab4a_ not modelled 11.5 22 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 70 c1p4vA_ not modelled 11.5 16 PDB header:hydrolase Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine 71 c2wlgA_ not modelled 11.4 24 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 72 d2jdqd1 not modelled 11.4 15 Fold:PB2 C-terminal domain-like Superfamily:PB2 C-terminal domain-like Family:PB2 C-terminal domain-like 73 c2hc8A_ not modelled 11.4 29 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 74 c2xkjE_ not modelled 11.3 36 PDB header:isomerase Chain: E: PDB Molecule:topoisomerase iv; PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate) 75 c3fnkA_ not modelled 11.3 25 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus 76 d1bjta_ not modelled 11.2 60 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 77 c1bjtA_ not modelled 11.2 60 PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 78 d1t3da_ not modelled 11.2 32 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 79 c2vtwF_ not modelled 11.2 27 PDB header:viral protein Chain: F: PDB Molecule:fiber protein 2; PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre 80 c1yo4A_ not modelled 11.1 47 PDB header:viral protein Chain: A: PDB Molecule:hypothetical protein x4; PDBTitle: solution structure of the sars coronavirus orf 7a coded x42 protein 81 c1hrlA_ not modelled 11.0 60 PDB header:toxin Chain: A: PDB Molecule:paralytic peptide i; PDBTitle: structure of a paralytic peptide from an insect, manduca2 sexta 82 d1iruh_ not modelled 10.9 12 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 83 d1j2qh_ not modelled 10.8 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 84 d1iruk_ not modelled 10.8 22 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 85 d1pk6a_ not modelled 10.7 22 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 86 d1w7pd2 not modelled 10.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 87 c3dr2A_ not modelled 10.5 14 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 88 d1x38a2 not modelled 10.5 25 Fold:Flavodoxin-like Superfamily:Beta-D-glucan exohydrolase, C-terminal domain Family:Beta-D-glucan exohydrolase, C-terminal domain 89 c2wh7A_ not modelled 10.4 30 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-phage associated; PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2 90 d1rypd_ not modelled 10.0 13 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 91 d1eaic_ not modelled 9.9 25 Fold:Serine protease inhibitors Superfamily:Serine protease inhibitors Family:ATI-like 92 c2xk0A_ not modelled 9.9 27 PDB header:transcription Chain: A: PDB Molecule:polycomb protein pcl; PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl) 93 c2hh9A_ not modelled 9.9 28 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: thiamin pyrophosphokinase from candida albicans 94 d1krra_ not modelled 9.8 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 95 d1o5ua_ not modelled 9.8 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 96 d1o91a_ not modelled 9.7 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 97 c1o91B_ not modelled 9.7 31 PDB header:collagen Chain: B: PDB Molecule:collagen alpha 1(viii) chain; PDBTitle: crystal structure of a collagen viii nc1 domain trimer 98 d1jnpa_ not modelled 9.7 26 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 99 c7apiB_ not modelled 9.6 6 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism