Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	Y	F	T	L	F	G	L	P	A	R	Y	Q	L	D	T	Q	A	L	S	L	R	F	Q	D	L	Q	R	Q	Y	H	P	D	K	F	A	S	G	S	Q	A	E	Q	L	A	A	V	Q	Q	S	A	T	I	N	Q	A	W	Q	T
Secondary structure
SS confidence
Disorder		?	?					?							?	?	?																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	R	H	P	L	M	R	A	E	Y	L	L	S	L	H	G	F	D	L	A	S	E	Q	H	T	V	R	D	T	A	F	L	M	E	Q	L	E	L	R	E	E	L	D	E	I	E	Q	A	K	D	E	A	R	L	E	S	F	I	K	R
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?	?	?	?																	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Sequence		V	K	K	M	F	D	T	R	H	Q	L	M	V	E	Q	L	D	N	E	T	W	D	A	A	A	D	T	V	R	K	L	R	F	L	D	K	L	R	S	S	A	E	Q	L	E	E	K	L	L	D	F
Secondary structure
SS confidence
Disorder																		?	?	?	?																												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fpo chain A Region: 1 - 171 Aligned: 171 Modelled: 171 Confidence: 100.0% Identity: 99% PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli Phyre2 PDB 3bvo chain A Region: 1 - 168 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 31% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb Phyre2 PDB 3hho chain A Region: 1 - 169 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 48% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae Phyre2 PDB 3uo2 chain A Region: 2 - 165 Aligned: 144 Modelled: 147 Confidence: 99.9% Identity: 28% PDB header:chaperone Chain: A: PDB Molecule:j-type co-chaperone jac1, mitochondrial; PDBTitle: jac1 co-chaperone from saccharomyces cerevisiae Phyre2 PDB 1fpo chain A domain 1 Region: 1 - 76 Aligned: 76 Modelled: 76 Confidence: 99.9% Identity: 100% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 3apq chain B Region: 2 - 77 Aligned: 69 Modelled: 76 Confidence: 99.8% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 Phyre2 PDB 2l6l chain A Region: 2 - 75 Aligned: 72 Modelled: 74 Confidence: 99.8% Identity: 28% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 Phyre2 PDB 2ctq chain A Region: 2 - 75 Aligned: 67 Modelled: 72 Confidence: 99.8% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 Phyre2 PDB 2qsa chain A Region: 2 - 83 Aligned: 78 Modelled: 82 Confidence: 99.8% Identity: 23% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog dnj-2; PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans. Phyre2 PDB 2cug chain A Region: 1 - 77 Aligned: 69 Modelled: 75 Confidence: 99.7% Identity: 22% PDB header:chaperone Chain: A: PDB Molecule:mkiaa0962 protein; PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962 Phyre2 PDB 1wjz chain A Region: 2 - 77 Aligned: 74 Modelled: 76 Confidence: 99.7% Identity: 27% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 1gh6 chain A Region: 2 - 71 Aligned: 61 Modelled: 70 Confidence: 99.7% Identity: 16% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 2yua chain A Region: 1 - 74 Aligned: 67 Modelled: 74 Confidence: 99.7% Identity: 24% PDB header:chaperone Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18 PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein Phyre2 PDB 2ctw chain A Region: 2 - 72 Aligned: 64 Modelled: 71 Confidence: 99.7% Identity: 25% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 Phyre2 PDB 2kqx chain A Region: 2 - 76 Aligned: 67 Modelled: 75 Confidence: 99.7% Identity: 27% PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa Phyre2 PDB 1hdj chain A Region: 2 - 77 Aligned: 68 Modelled: 74 Confidence: 99.7% Identity: 22% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 2dmx chain A Region: 1 - 77 Aligned: 71 Modelled: 77 Confidence: 99.7% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 Phyre2 PDB 2lgw chain A Region: 2 - 75 Aligned: 68 Modelled: 74 Confidence: 99.7% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a Phyre2 PDB 1xbl chain A Region: 2 - 77 Aligned: 69 Modelled: 76 Confidence: 99.7% Identity: 25% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 2dn9 chain A Region: 1 - 77 Aligned: 70 Modelled: 77 Confidence: 99.7% Identity: 21% PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein Phyre2 1 c1fpoA_ 2 c3bvoA_ 3 c3hhoA_ 4 c3uo2A_ 5 d1fpoa1 6 c3apqB_ 7 c2l6lA_ 8 c2ctqA_ 9 c2qsaA_ 10 c2cugA_ 11 d1wjza_ 12 d1gh6a_ 13 c2yuaA_ 14 c2ctwA_ 15 c2kqxA_ 16 d1hdja_ 17 c2dmxA_ 18 c2lgwA_ 19 d1xbla_ 20 c2dn9A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1fpoA_ 100.0 99 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli 2 c3bvoA_ 100.0 31 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 3 c3hhoA_ 100.0 48 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae 4 c3uo2A_ 99.9 28 PDB header:chaperone Chain: A: PDB Molecule:j-type co-chaperone jac1, mitochondrial; PDBTitle: jac1 co-chaperone from saccharomyces cerevisiae 5 d1fpoa1 99.9 100 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 6 c3apqB_ 99.8 22 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 7 c2l6lA_ 99.8 28 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 8 c2ctqA_ 99.8 25 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 9 c2qsaA_ 99.8 23 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog dnj-2; PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans. 10 c2cugA_ 99.7 22 PDB header:chaperone Chain: A: PDB Molecule:mkiaa0962 protein; PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962 11 d1wjza_ 99.7 27 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 12 d1gh6a_ 99.7 16 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 13 c2yuaA_ 99.7 24 PDB header:chaperone Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18 PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein 14 c2ctwA_ 99.7 25 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 15 c2kqxA_ 99.7 27 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 16 d1hdja_ 99.7 22 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 17 c2dmxA_ 99.7 18 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 18 c2lgwA_ 99.7 18 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 19 d1xbla_ 99.7 25 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 20 c2dn9A_ 99.7 21 PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein 21 c2ctrA_ not modelled 99.7 30 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 9; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9 22 c2ctpA_ not modelled 99.7 25 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12 23 c2o37A_ not modelled 99.7 24 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 24 c2ochA_ not modelled 99.7 23 PDB header:chaperone Chain: A: PDB Molecule:hypothetical protein dnj-12; PDBTitle: j-domain of dnj-12 from caenorhabditis elegans 25 d1fafa_ not modelled 99.7 22 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 26 c1bq0A_ not modelled 99.6 25 PDB header:chaperone Chain: A: PDB Molecule:dnaj; PDBTitle: j-domain (residues 1-77) of the escherichia coli n-terminal2 fragment (residues 1-104) of the molecular chaperone dnaj,3 nmr, 20 structures 27 c2ys8A_ not modelled 99.6 16 PDB header:protein binding Chain: A: PDB Molecule:rab-related gtp-binding protein rabj; PDBTitle: solution structure of the dnaj-like domain from human ras-2 associated protein rap1 28 c2pf4E_ not modelled 99.6 14 PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit 29 d1iura_ not modelled 99.6 13 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 30 d1nz6a_ not modelled 99.4 16 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 31 d1n4ca_ not modelled 99.4 17 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 32 d1fpoa2 not modelled 99.4 99 Fold:Open three-helical up-and-down bundle Superfamily:HSC20 (HSCB), C-terminal oligomerisation domain Family:HSC20 (HSCB), C-terminal oligomerisation domain 33 c2guzO_ not modelled 99.3 21 PDB header:chaperone, protein transport Chain: O: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: structure of the tim14-tim16 complex of the mitochondrial2 protein import motor 34 c3ag7A_ not modelled 99.2 18 PDB header:plant protein Chain: A: PDB Molecule:putative uncharacterized protein f9e10.5; PDBTitle: an auxilin-like j-domain containing protein, jac1 j-domain 35 c2y4tA_ not modelled 99.1 29 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of the human co-chaperone p58(ipk) 36 c2guzD_ not modelled 99.1 17 PDB header:chaperone, protein transport Chain: D: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: structure of the tim14-tim16 complex of the mitochondrial2 protein import motor 37 c3apoA_ not modelled 98.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of full-length erdj5 38 d1ug2a_ not modelled 63.3 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 39 d1fc2c_ not modelled 30.8 16 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 40 d1deeg_ not modelled 24.2 13 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 41 d1lp1b_ not modelled 23.7 18 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 42 d2jwda1 not modelled 20.7 18 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 43 d1ni7a_ not modelled 20.4 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 44 d2d00a1 not modelled 14.6 19 Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like 45 c3epvB_ not modelled 14.1 19 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 46 c2zfdB_ not modelled 12.2 18 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 47 c2ehbD_ not modelled 11.4 24 PDB header:signalling protein/transferase Chain: D: PDB Molecule:cbl-interacting serine/threonine-protein kinase 24; PDBTitle: the structure of the c-terminal domain of the protein kinase atsos22 bound to the calcium sensor atsos3 48 d2etva1 not modelled 10.9 12 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 49 c2vrgA_ not modelled 10.1 16 PDB header:transport Chain: A: PDB Molecule:multiple coagulation factor deficiency protein 2; PDBTitle: structure of human mcfd2 50 d1pmia_ not modelled 9.8 44 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 51 c3pshA_ not modelled 9.7 16 PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) 52 c3h1yA_ not modelled 8.8 36 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 53 c2l53B_ not modelled 8.7 14 PDB header:ca-binding protein/proton transport Chain: B: PDB Molecule:voltage-gated sodium channel type v alpha isoform b PDBTitle: solution nmr structure of apo-calmodulin in complex with the iq motif2 of human cardiac sodium channel nav1.5 54 d2py6a1 not modelled 8.6 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:FkbM-like 55 c2j8kA_ not modelled 8.5 19 PDB header:toxin Chain: A: PDB Molecule:np275-np276; PDBTitle: structure of the fusion of np275 and np276, pentapeptide2 repeat proteins from nostoc punctiforme 56 d2gtad1 not modelled 8.3 15 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 57 d1uf2a_ not modelled 8.2 33 Fold:Reovirus inner layer core protein p3 Superfamily:Reovirus inner layer core protein p3 Family:Phytoreovirus core 58 c1uf2A_ not modelled 8.2 33 PDB header:virus Chain: A: PDB Molecule:core protein p3; PDBTitle: the atomic structure of rice dwarf virus (rdv) 59 c2kxwB_ not modelled 8.1 0 PDB header:calcium-binding protein/metal transport Chain: B: PDB Molecule:sodium channel protein type 2 subunit alpha; PDBTitle: structure of the c-domain fragment of apo calmodulin bound to the iq2 motif of nav1.2 60 d1edla_ not modelled 8.0 14 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 61 d1c20a_ not modelled 7.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 62 c2rq5A_ not modelled 7.6 14 PDB header:transcription Chain: A: PDB Molecule:protein jumonji; PDBTitle: solution structure of the at-rich interaction domain (arid)2 of jumonji/jarid2 63 d1mxaa1 not modelled 7.1 100 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 64 d2p02a1 not modelled 6.7 100 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 65 c2eqyA_ not modelled 6.6 11 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji, at rich interactive domain 1b; PDBTitle: solution structure of the arid domain of jarid1b protein 66 d2dara2 not modelled 6.5 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 67 d3saka_ not modelled 6.4 17 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 68 c2ov6A_ not modelled 6.4 19 PDB header:hydrolase Chain: A: PDB Molecule:v-type atp synthase subunit f; PDBTitle: the nmr structure of subunit f of the methanogenic a1ao atp synthase2 and its interaction with the nucleotide-binding subunit b 69 c3fn2A_ not modelled 6.2 19 PDB header:transferase Chain: A: PDB Molecule:putative sensor histidine kinase domain; PDBTitle: crystal structure of a putative sensor histidine kinase domain from2 clostridium symbiosum atcc 14940 70 d1boda_ not modelled 6.2 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K 71 c1b0nB_ not modelled 6.0 0 PDB header:transcription regulator Chain: B: PDB Molecule:protein (sini protein); PDBTitle: sinr protein/sini protein complex 72 d1b0nb_ not modelled 6.0 0 Fold:Dimerisation interlock Superfamily:SinR repressor dimerisation domain-like Family:SinR repressor dimerisation domain-like 73 d3fapb_ not modelled 6.0 12 Fold:Four-helical up-and-down bundle Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 74 d1bh9b_ not modelled 5.8 13 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 75 d1p77a2 not modelled 5.7 15 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 76 d1ig6a_ not modelled 5.4 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 77 d1qwra_ not modelled 5.3 25 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 78 d1cf7a_ not modelled 5.3 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 79 d2oeea1 not modelled 5.2 11 Fold:YheA-like Superfamily:YheA/YmcA-like Family:YheA-like 80 c2jrzA_ not modelled 5.2 9 PDB header:oxidoreductase Chain: A: PDB Molecule:histone demethylase jarid1c; PDBTitle: solution structure of the bright/arid domain from the human2 jarid1c protein.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0