Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	K	S	K	M	K	L	M	P	L	L	V	S	V	T	L	I	S	G	C	T	V	L	P	G	S	N	M	S	T	M	G	K	D	V	I	K	Q	Q	D	A	D	F	D	L	D	K	M	V	N	V	Y	P	L	T	P	R	L	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?													?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Q	L	R	P	R	P	N	V	A	R	P	N	M	T	L	E	S	E	I	A	N	Y	Q	Y	R	V	G	P	G	D	V	L	N	V	T	V	W	D	H	P	E	L	T	T	P	A	G	Q	Y	R	S	S	S	D	T	G	N	W	V
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	P	D	G	T	M	F	Y	P	Y	I	G	K	V	H	V	V	G	K	T	L	A	E	I	R	S	D	I	T	G	R	L	A	T	Y	I	A	D	P	Q	V	D	V	N	I	A	A	F	R	S	Q	K	A	Y	I	S	G	Q	V	N
Secondary structure
SS confidence
Disorder																	?																															?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	S	G	Q	Q	A	I	T	N	V	P	L	T	I	L	D	A	I	N	A	A	G	G	L	T	D	T	A	D	W	R	N	V	V	L	T	H	N	G	R	E	E	R	I	S	L	Q	A	L	M	Q	N	G	D	L	N	Q	N	R	L
Secondary structure
SS confidence
Disorder										?	?	?	?												?		?																									?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	Y	P	G	D	I	L	Y	V	P	R	N	D	D	L	K	V	F	V	M	G	E	V	K	K	Q	S	T	L	K	M	D	F	S	G	M	T	L	T	E	A	L	G	N	A	E	G	I	D	M	T	T	S	N	A	S	G	I	F	V
Secondary structure
SS confidence
Disorder															?		?											?	?				?	?															?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	R	P	L	K	G	E	G	G	R	N	G	K	I	A	N	I	Y	Q	L	D	M	S	D	A	T	S	L	V	M	A	T	E	F	R	L	Q	P	Y	D	V	V	Y	V	T	T	A	P	V	S	R	W	N	R	L	I	N	Q	L	L
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Sequence		P	T	I	S	G	V	R	Y	M	T	D	T	A	S	D	I	H	N	W
Secondary structure
SS confidence
Disorder																?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j58 chain G Region: 22 - 377 Aligned: 354 Modelled: 356 Confidence: 100.0% Identity: 67% PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza Phyre2 PDB 2w8i chain G Region: 24 - 347 Aligned: 322 Modelled: 324 Confidence: 100.0% Identity: 69% PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. Phyre2 PDB 3p42 chain D Region: 170 - 361 Aligned: 169 Modelled: 175 Confidence: 99.8% Identity: 17% PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon Phyre2 PDB 2fug chain 1 domain 3 Region: 171 - 203 Aligned: 32 Modelled: 33 Confidence: 90.0% Identity: 25% Fold: beta-Grasp (ubiquitin-like) Superfamily: Nqo1 middle domain-like Family: Nqo1 middle domain-like Phyre2 PDB 2fug chain A Region: 170 - 203 Aligned: 33 Modelled: 34 Confidence: 84.7% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 1ghh chain A Region: 140 - 178 Aligned: 39 Modelled: 39 Confidence: 66.8% Identity: 10% Fold: DNA damage-inducible protein DinI Superfamily: DNA damage-inducible protein DinI Family: DNA damage-inducible protein DinI Phyre2 PDB 2xdv chain A Region: 230 - 262 Aligned: 33 Modelled: 33 Confidence: 64.8% Identity: 27% PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 Phyre2 PDB 1vrb chain A domain 1 Region: 233 - 251 Aligned: 19 Modelled: 19 Confidence: 57.3% Identity: 37% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Asparaginyl hydroxylase-like Phyre2 PDB 3uyj chain A Region: 333 - 346 Aligned: 14 Modelled: 14 Confidence: 57.2% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg Phyre2 PDB 3rns chain A Region: 236 - 346 Aligned: 110 Modelled: 110 Confidence: 56.5% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 2h8k chain A Region: 325 - 361 Aligned: 37 Modelled: 37 Confidence: 51.8% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap Phyre2 PDB 3al6 chain A Region: 238 - 251 Aligned: 14 Modelled: 14 Confidence: 46.4% Identity: 36% PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 Phyre2 PDB 3eyt chain A Region: 118 - 154 Aligned: 32 Modelled: 37 Confidence: 45.0% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 Phyre2 PDB 1q44 chain A Region: 332 - 361 Aligned: 30 Modelled: 30 Confidence: 43.0% Identity: 20% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: PAPS sulfotransferase Phyre2 PDB 1zof chain A domain 1 Region: 118 - 162 Aligned: 43 Modelled: 45 Confidence: 41.9% Identity: 12% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1qmv chain A Region: 114 - 150 Aligned: 36 Modelled: 37 Confidence: 41.3% Identity: 11% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1wp0 chain A domain 1 Region: 118 - 155 Aligned: 33 Modelled: 33 Confidence: 40.2% Identity: 24% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3k2o chain B Region: 238 - 251 Aligned: 14 Modelled: 14 Confidence: 40.0% Identity: 36% PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase Phyre2 PDB 1x82 chain A Region: 239 - 302 Aligned: 64 Modelled: 64 Confidence: 39.8% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Glucose-6-phosphate isomerase, GPI Phyre2 PDB 2zpm chain A Region: 336 - 359 Aligned: 24 Modelled: 21 Confidence: 39.2% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b Phyre2 1 c2j58G_ 2 c2w8iG_ 3 c3p42D_ 4 d2fug13 5 c2fugA_ 6 d1ghha_ 7 c2xdvA_ 8 d1vrba1 9 c3uyjA_ 10 c3rnsA_ 11 c2h8kA_ 12 c3al6A_ 13 c3eytA_ 14 d1q44a_ 15 d1zofa1 16 d1qmva_ 17 d1wp0a1 18 c3k2oB_ 19 d1x82a_ 20 c2zpmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j58G_ 100.0 67 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 2 c2w8iG_ 100.0 69 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 3 c3p42D_ 99.8 17 PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon 4 d2fug13 90.0 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 5 c2fugA_ 84.7 24 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 6 d1ghha_ 66.8 10 Fold:DNA damage-inducible protein DinI Superfamily:DNA damage-inducible protein DinI Family:DNA damage-inducible protein DinI 7 c2xdvA_ 64.8 27 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 8 d1vrba1 57.3 37 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 9 c3uyjA_ 57.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 10 c3rnsA_ 56.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 11 c2h8kA_ 51.8 11 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 12 c3al6A_ 46.4 36 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 13 c3eytA_ 45.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 14 d1q44a_ 43.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 15 d1zofa1 41.9 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 16 d1qmva_ 41.3 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 17 d1wp0a1 40.2 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 18 c3k2oB_ 40.0 36 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 19 d1x82a_ 39.8 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 20 c2zpmA_ 39.2 25 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 21 c3lorB_ not modelled 38.8 19 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 22 d1prxa_ not modelled 37.7 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 23 c2r37A_ not modelled 36.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 3; PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant) 24 c2yztA_ not modelled 36.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 25 c2v2gC_ not modelled 36.1 16 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxiredoxin 6; PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form 26 c2opkC_ not modelled 35.9 23 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 27 d1xv1a_ not modelled 35.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 28 d1h2ka_ not modelled 35.0 46 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 29 c3razA_ not modelled 34.2 3 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 30 d1j99a_ not modelled 34.0 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 31 d1fmja_ not modelled 34.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 32 d1g3ma_ not modelled 32.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 33 d1knga_ not modelled 31.9 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 34 d1q20a_ not modelled 31.3 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 35 c2hhzA_ not modelled 31.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related; PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution 36 d1we0a1 not modelled 30.9 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 37 c2r32A_ not modelled 30.6 18 PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant 38 d1j3pa_ not modelled 30.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 39 c2fhdA_ not modelled 30.0 19 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 40 c2v1mA_ not modelled 29.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase; PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase 41 d2dsya1 not modelled 28.6 19 Fold:TTHA1013/TTHA0281-like Superfamily:TTHA1013/TTHA0281-like Family:TTHA0281-like 42 d1xcca_ not modelled 26.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 43 d1uula_ not modelled 26.1 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 44 c3cmiA_ not modelled 25.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 45 c3or5A_ not modelled 25.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 46 c3jxoB_ not modelled 24.6 14 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 47 c3drnB_ not modelled 24.2 8 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus 48 d1aqua_ not modelled 23.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 49 d1gp1a_ not modelled 23.1 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 50 c3kh7A_ not modelled 23.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 51 d1juha_ not modelled 22.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 52 d1sfna_ not modelled 22.6 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 53 c1zd1B_ not modelled 22.1 17 PDB header:transferase Chain: B: PDB Molecule:sulfotransferase 4a1; PDBTitle: human sulfortransferase sult4a1 54 c2gwhA_ not modelled 22.0 14 PDB header:transferase Chain: A: PDB Molecule:sulfotransferase 1c2; PDBTitle: human sulfotranferase sult1c2 in complex with pap and2 pentachlorophenol 55 d1uija2 not modelled 21.7 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 56 d1uika2 not modelled 21.7 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 57 d1yexa1 not modelled 21.7 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 58 c3d0fA_ not modelled 21.6 22 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 59 d1y7ma2 not modelled 21.4 4 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 60 c2q30C_ not modelled 21.1 7 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 61 d2phla2 not modelled 20.6 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 62 d1lr5a_ not modelled 20.3 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 63 c2wbqA_ not modelled 20.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 64 d1qq2a_ not modelled 20.2 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 65 c3lwaA_ not modelled 20.1 6 PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a 66 c1sefA_ not modelled 19.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 67 d1sefa_ not modelled 19.9 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 68 d1n8ja_ not modelled 19.6 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 69 c3kvaA_ not modelled 19.6 31 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 70 c2rqeA_ not modelled 19.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition 71 d1dgwa_ not modelled 19.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 72 d2cv4a1 not modelled 18.5 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 73 d2d40a1 not modelled 18.4 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 74 d2phna1 not modelled 18.4 23 Fold:CofE-like Superfamily:CofE-like Family:CofE-like 75 c2og5A_ not modelled 18.3 31 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 76 d1ds1a_ not modelled 18.0 31 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 77 c3gl3D_ not modelled 18.0 14 PDB header:oxidoreductase Chain: D: PDB Molecule:putative thiol:disulfide interchange protein PDBTitle: crystal structure of a putative thiol:disulfide interchange2 protein dsbe from chlorobium tepidum 78 c2rogA_ not modelled 17.5 23 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 79 c3u7zA_ not modelled 17.4 13 PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution 80 d2b7ka1 not modelled 17.4 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 81 d1z5ye1 not modelled 16.9 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 82 c2b1kA_ not modelled 16.9 7 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 83 d1uzxa_ not modelled 16.9 11 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 84 d1zyea1 not modelled 16.8 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 85 d1te7a_ not modelled 16.5 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 86 d1rc6a_ not modelled 16.5 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 87 c2yu1A_ not modelled 16.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 88 c1zofB_ not modelled 16.3 12 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide-reductase; PDBTitle: crystal structure of alkyl hydroperoxide-reductase (ahpc)2 from helicobacter pylori 89 c2rliA_ not modelled 16.0 15 PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 90 d1sq4a_ not modelled 15.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 91 d1fe0a_ not modelled 15.9 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 92 d3bfxa1 not modelled 15.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 93 c2c0dA_ not modelled 15.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin peroxidase 2; PDBTitle: structure of the mitochondrial 2-cys peroxiredoxin from2 plasmodium falciparum 94 c3h7hA_ not modelled 15.6 25 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 95 c1zyeL_ not modelled 15.6 16 PDB header:oxidoreductase Chain: L: PDB Molecule:thioredoxin-dependent peroxide reductase; PDBTitle: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii 96 c2wkdA_ not modelled 15.5 31 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 97 c2vpvA_ not modelled 15.5 7 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 98 d1e2ya_ not modelled 15.4 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 99 c2he3A_ not modelled 15.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0